Published in Plant Mol Biol on January 01, 2004
Genome plasticity a key factor in the success of polyploid wheat under domestication. Science (2007) 3.69
Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes. Plant Physiol (2004) 1.43
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics (2006) 1.31
Analysis of plant diversity with retrotransposon-based molecular markers. Heredity (Edinb) (2010) 1.24
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics (2005) 1.21
Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels. Genome Res (2005) 1.15
Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome. Plant Cell (2005) 1.14
Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres. Chromosoma (2008) 1.05
Gene evolution at the ends of wheat chromosomes. Proc Natl Acad Sci U S A (2006) 1.05
Triticeae genomics: advances in sequence analysis of large genome cereal crops. Chromosome Res (2007) 1.01
Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins. Funct Integr Genomics (2009) 0.93
The wheat omega-gliadin genes: structure and EST analysis. Funct Integr Genomics (2009) 0.93
Mitotic illegitimate recombination is a mechanism for novel changes in high-molecular-weight glutenin subunits in wheat-rye hybrids. PLoS One (2011) 0.90
Template switching can create complex LTR retrotransposon insertions in Triticeae genomes. BMC Genomics (2007) 0.85
Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative. Chromosoma (2009) 0.83
A candidate autonomous version of the wheat MITE Hikkoshi is present in the rice genome. Mol Genet Genomics (2005) 0.82
A new class of wheat gliadin genes and proteins. PLoS One (2012) 0.80
New cis-regulatory elements in the Rht-D1b locus region of wheat. Funct Integr Genomics (2012) 0.79
Rapid EST isolation from chromosome 1R of rye. BMC Plant Biol (2008) 0.75
A Catalog of Regulatory Sequences for Trait Gene for the Genome Editing of Wheat. Front Plant Sci (2016) 0.75
Marker-assisted selection for recognizing wheat mutant genotypes carrying HMW glutenin alleles related to baking quality. ScientificWorldJournal (2014) 0.75
Characterization of SBEIIa homoeologous genes in bread wheat. Mol Genet Genomics (2012) 0.75
Recent insertion of a 52-kb mitochondrial DNA segment in the wheat lineage. Funct Integr Genomics (2011) 0.75
The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science (2004) 5.86
BatchPrimer3: a high throughput web application for PCR and sequencing primer design. BMC Bioinformatics (2008) 5.24
A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science (2006) 5.13
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02
Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol Genet Genomics (2005) 3.63
Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48
High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics (2003) 3.02
A kinase-START gene confers temperature-dependent resistance to wheat stripe rust. Science (2009) 2.76
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell (2003) 2.58
A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol (2009) 2.57
Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m). Funct Integr Genomics (2002) 2.23
Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat. New Phytol (2013) 2.07
Molecular and structural characterization of barley vernalization genes. Plant Mol Biol (2005) 2.01
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics (2007) 1.97
Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90
Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence. BMC Genomics (2011) 1.88
The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. J Exp Bot (2006) 1.85
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon. Theor Appl Genet (2006) 1.77
Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome (2006) 1.77
Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics (2002) 1.76
Regulation of VRN-1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol (2005) 1.74
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci U S A (2013) 1.70
GrainGenes, the genome database for small-grain crops. Nucleic Acids Res (2003) 1.68
Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J (2008) 1.61
Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering. PLoS Genet (2012) 1.58
Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes. Plant Physiol (2004) 1.43
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics (2010) 1.41
Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol (2006) 1.40
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37
High-temperature adult-plant (HTAP) stripe rust resistance gene Yr36 from Triticum turgidum ssp. dicoccoides is closely linked to the grain protein content locus Gpc-B1. Theor Appl Genet (2005) 1.35
Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain. J Exp Bot (2009) 1.34
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS One (2011) 1.33
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33
GenoProfiler: batch processing of high-throughput capillary fingerprinting data. Bioinformatics (2006) 1.32
Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol (2011) 1.32
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics (2006) 1.31
Genetic and molecular characterization of the VRN2 loci in tetraploid wheat. Plant Physiol (2008) 1.30
A cluster of 11 CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum. Mol Genet Genomics (2005) 1.30
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat. BMC Genomics (2009) 1.30
ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery. BMC Bioinformatics (2009) 1.29
Deletion polymorphism in wheat chromosome regions with contrasting recombination rates. Genetics (2004) 1.28
Transcriptional profiling of wheat caryopsis development using cDNA microarrays. Plant Mol Biol (2007) 1.26
Intestinal T-cell responses to high-molecular-weight glutenins in celiac disease. Gastroenterology (2003) 1.24
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Plant Mol Biol (2009) 1.22
Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon. Theor Appl Genet (2011) 1.20
Regulation of freezing tolerance and flowering in temperate cereals: the VRN-1 connection. Plant Physiol (2010) 1.20
The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Res Notes (2008) 1.20
A first generation BAC-based physical map of the rainbow trout genome. BMC Genomics (2009) 1.20
Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.). Theor Appl Genet (2010) 1.17
GrainGenes 2.0. an improved resource for the small-grains community. Plant Physiol (2005) 1.17
Wheat flowering repressor VRN2 and promoter CO2 compete for interactions with NUCLEAR FACTOR-Y complexes. Plant J (2011) 1.16
Transferability of microsatellite markers from Brachypodium distachyon to Miscanthus sinensis, a potential biomass crop. J Integr Plant Biol (2011) 1.16
Characterization of the maintained vegetative phase deletions from diploid wheat and their effect on VRN2 and FT transcript levels. Mol Genet Genomics (2010) 1.15
The expression of several Cbf genes at the Fr-A2 locus is linked to frost resistance in wheat. Mol Genet Genomics (2005) 1.12
PIECE: a database for plant gene structure comparison and evolution. Nucleic Acids Res (2012) 1.10
Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08
Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls. Planta (2009) 1.07
A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes. Mar Biotechnol (NY) (2011) 1.06
Wheat VIN3-like PHD finger genes are up-regulated by vernalization. Mol Genet Genomics (2006) 1.06
Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum. Plant Mol Biol (2008) 1.05
Dissecting the genetic architecture of frost tolerance in Central European winter wheat. J Exp Bot (2013) 1.05
Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium. Funct Integr Genomics (2009) 1.05
Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat. Theor Appl Genet (2014) 1.05
Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theor Appl Genet (2011) 1.04
The CArG-box located upstream from the transcriptional start of wheat vernalization gene VRN1 is not necessary for the vernalization response. J Hered (2009) 1.04
RNA interference for wheat functional gene analysis. Transgenic Res (2007) 1.03
Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome. Plant Mol Biol (2007) 1.02
Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat. Genome (2009) 1.01
Genomic organization of the complex alpha-gliadin gene loci in wheat. Theor Appl Genet (2004) 1.01
Genetic diversity revealed by single nucleotide polymorphism markers in a worldwide germplasm collection of durum wheat. Int J Mol Sci (2013) 1.00
Structural organization of the barley D-hordein locus in comparison with its orthologous regions of wheat genomes. Genome (2003) 1.00
BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes. J Biomed Biotechnol (2010) 1.00
Increased copy number at the HvFT1 locus is associated with accelerated flowering time in barley. Mol Genet Genomics (2013) 0.97
Divergent functions of orthologous NAC transcription factors in wheat and rice. Plant Mol Biol (2012) 0.97
Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species. BMC Genomics (2010) 0.97
Molecular characterization of the duplicated meristem identity genes HvAP1a and HvAP1b in barley. Genome (2005) 0.96
Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants. PLoS One (2013) 0.95
RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development. Nucleic Acids Res (2010) 0.95