Published in Funct Integr Genomics on April 12, 2002
Positional cloning of the wheat vernalization gene VRN1. Proc Natl Acad Sci U S A (2003) 6.34
Genome plasticity a key factor in the success of polyploid wheat under domestication. Science (2007) 3.69
Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics (2008) 3.57
Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell (2005) 3.17
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell (2003) 2.58
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet (2009) 2.45
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics (2007) 1.97
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proc Natl Acad Sci U S A (2003) 1.94
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics (2004) 1.94
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. Genome Res (2007) 1.78
Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics (2002) 1.76
Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67
Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat. Proc Natl Acad Sci U S A (2005) 1.50
CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements. Plant Physiol (2003) 1.43
Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes. Plant Physiol (2004) 1.43
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genomics (2010) 1.40
Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile. Genetics (2005) 1.38
Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res (2010) 1.36
Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa. BMC Genomics (2011) 1.36
A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics (2004) 1.33
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics (2008) 1.32
Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes. Genetics (2006) 1.31
Incongruent patterns of local and global genome size evolution in cotton. Genome Res (2004) 1.30
Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat. Genetics (2008) 1.24
Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics (2011) 1.22
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Genomics (2005) 1.21
Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice. Mol Genet Genomics (2004) 1.17
Transposon variants and their effects on gene expression in Arabidopsis. PLoS Genet (2013) 1.17
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics (2005) 1.12
A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus. Genetics (2003) 1.12
Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools. Plant Physiol (2008) 1.11
Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice. Plant Physiol (2004) 1.11
A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7. Genetics (2004) 1.10
Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex. Plant Physiol (2002) 1.08
Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08
Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Funct Integr Genomics (2008) 1.06
Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres. Chromosoma (2008) 1.05
Gene evolution at the ends of wheat chromosomes. Proc Natl Acad Sci U S A (2006) 1.05
Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium. Funct Integr Genomics (2009) 1.05
Identification of wheat chromosomal regions containing expressed resistance genes. Genetics (2004) 1.03
Triticeae genomics: advances in sequence analysis of large genome cereal crops. Chromosome Res (2007) 1.01
Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat. Genetics (2010) 1.01
In silico comparative analysis reveals a mosaic conservation of genes within a novel colinear region in wheat chromosome 1AS and rice chromosome 5S. Funct Integr Genomics (2004) 1.00
Exceptional haplotype variation in maize. Proc Natl Acad Sci U S A (2002) 0.99
Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Proc Natl Acad Sci U S A (2015) 0.97
Macro- and microcolinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome. Funct Integr Genomics (2005) 0.94
Conserved globulin gene across eight grass genomes identify fundamental units of the loci encoding seed storage proteins. Funct Integr Genomics (2009) 0.93
Contrasting rates of evolution in Pm3 loci from three wheat species and rice. Genetics (2007) 0.92
Revolver is a new class of transposon-like gene composing the triticeae genome. DNA Res (2008) 0.92
Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat. Genetics (2011) 0.89
Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheat. Genome Biol Evol (2013) 0.87
Organization and evolution of transposable elements along the bread wheat chromosome 3B. Genome Biol (2014) 0.86
Automated paleontology of repetitive DNA with REANNOTATE. BMC Genomics (2008) 0.85
Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice. Funct Integr Genomics (2007) 0.83
Allelic variation of the Waxy gene in foxtail millet [Setaria italica (L.) P. Beauv.] by single nucleotide polymorphisms. Mol Genet Genomics (2007) 0.82
Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice. Mol Genet Genomics (2011) 0.82
Genetic association of OPR genes with resistance to Hessian fly in hexaploid wheat. BMC Genomics (2013) 0.82
A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block. BMC Plant Biol (2010) 0.81
Hemi-nested touchdown PCR combined with primer-template mismatch PCR for rapid isolation and sequencing of low molecular weight glutenin subunit gene family from a hexaploid wheat BAC library. BMC Genet (2007) 0.81
Diaspora, a large family of Ty3-gypsy retrotransposons in Glycine max, is an envelope-less member of an endogenous plant retrovirus lineage. BMC Evol Biol (2005) 0.80
Comparative analysis in cereals of a key proline catabolism gene. Mol Genet Genomics (2005) 0.80
Independent mammalian genome contractions following the KT boundary. Genome Biol Evol (2009) 0.80
Genome change in wheat observed through the structure and expression of α/β-gliadin genes. Funct Integr Genomics (2012) 0.80
Wheat functional genomics and engineering crop improvement. Genome Biol (2002) 0.79
Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.). Genetics (2009) 0.78
Sequence variations of the partially dominant DELLA gene Rht-B1c in wheat and their functional impacts. J Exp Bot (2013) 0.78
Recruitment of closely linked genes for divergent functions: the seed storage protein (Glu-3) and powdery mildew (Pm3) genes in wheat (Triticum aestivum L.). Funct Integr Genomics (2009) 0.78
The bioinformatics challenges in comparative analysis of cereal genomes-an overview. Funct Integr Genomics (2004) 0.76
Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis. Chromosome Res (2016) 0.75
Revolver and superior: novel transposon-like gene families of the plant kingdom. Curr Genomics (2010) 0.75
Characterization of SBEIIa homoeologous genes in bread wheat. Mol Genet Genomics (2012) 0.75
The B73 maize genome: complexity, diversity, and dynamics. Science (2009) 18.73
A unified classification system for eukaryotic transposable elements. Nat Rev Genet (2007) 11.03
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science (2004) 5.86
The genome of woodland strawberry (Fragaria vesca). Nat Genet (2010) 5.86
Rapid recent growth and divergence of rice nuclear genomes. Proc Natl Acad Sci U S A (2004) 5.35
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res (2002) 5.15
A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science (2006) 5.13
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res (2004) 4.43
Close split of sorghum and maize genome progenitors. Genome Res (2004) 4.34
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02
Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol Genet Genomics (2005) 3.63
Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (2011) 3.10
De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nat Biotechnol (2011) 2.94
A kinase-START gene confers temperature-dependent resistance to wheat stripe rust. Science (2009) 2.76
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell (2003) 2.58
A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol (2009) 2.57
The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res (2012) 2.55
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet (2009) 2.45
Foxtail millet: a sequence-driven grass model system. Plant Physiol (2009) 2.32
Consistent over-estimation of gene number in complex plant genomes. Curr Opin Plant Biol (2004) 2.24
Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Genes Dev (2006) 2.21
Gene loss and movement in the maize genome. Genome Res (2004) 2.11
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc Natl Acad Sci U S A (2006) 2.05
Molecular and structural characterization of barley vernalization genes. Plant Mol Biol (2005) 2.01
Numerous small rearrangements of gene content, order and orientation differentiate grass genomes. Plant Mol Biol (2002) 1.97
Uneven chromosome contraction and expansion in the maize genome. Genome Res (2006) 1.96
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics (2004) 1.94
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proc Natl Acad Sci U S A (2003) 1.94
Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90
The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. J Exp Bot (2006) 1.85
Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster. Appl Environ Microbiol (2007) 1.80
Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics (2002) 1.76
Regulation of VRN-1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol (2005) 1.74
Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67
High-Cot sequence analysis of the maize genome. Plant J (2003) 1.65
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J (2008) 1.61
The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics (2002) 1.61
Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proc Natl Acad Sci U S A (2009) 1.60
Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering. PLoS Genet (2012) 1.58
Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell (2008) 1.55
Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley. Funct Integr Genomics (2002) 1.52
Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat. Proc Natl Acad Sci U S A (2005) 1.50
Plant centromere organization: a dynamic structure with conserved functions. Trends Genet (2007) 1.50
Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement. Plant Cell (2002) 1.49
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proc Natl Acad Sci U S A (2005) 1.48
G protein activation without a GEF in the plant kingdom. PLoS Genet (2012) 1.43
The evolution of nuclear genome structure in seed plants. Am J Bot (2004) 1.41
Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics (2010) 1.41
Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol (2006) 1.40
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37
Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics (2004) 1.37
High-temperature adult-plant (HTAP) stripe rust resistance gene Yr36 from Triticum turgidum ssp. dicoccoides is closely linked to the grain protein content locus Gpc-B1. Theor Appl Genet (2005) 1.35
Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain. J Exp Bot (2009) 1.34
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS One (2011) 1.33
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res (2009) 1.33
On the tetraploid origin of the maize genome. Comp Funct Genomics (2004) 1.32
Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol (2011) 1.32
The maize genome as a model for efficient sequence analysis of large plant genomes. Curr Opin Plant Biol (2006) 1.31
Genetic and molecular characterization of the VRN2 loci in tetraploid wheat. Plant Physiol (2008) 1.30
A cluster of 11 CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum. Mol Genet Genomics (2005) 1.30
Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genet (2009) 1.29
Structure-based discovery and description of plant and animal Helitrons. Proc Natl Acad Sci U S A (2009) 1.27
Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays. Genome Res (2002) 1.25
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
A GeneTrek analysis of the maize genome. Proc Natl Acad Sci U S A (2007) 1.23
Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat. Plant Mol Biol (2004) 1.23
Regulation of freezing tolerance and flowering in temperate cereals: the VRN-1 connection. Plant Physiol (2010) 1.20
Divergent perspectives on GM food. Nat Biotechnol (2002) 1.19
Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries. Genome Res (2005) 1.19
Pathogen corruption and site-directed recombination at a plant disease resistance gene cluster. Genome Res (2008) 1.19
Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.). Theor Appl Genet (2010) 1.17
Wheat flowering repressor VRN2 and promoter CO2 compete for interactions with NUCLEAR FACTOR-Y complexes. Plant J (2011) 1.16
Structure and evolution of the Cinful retrotransposon family of maize. Genome (2003) 1.16
Transposable element origins of epigenetic gene regulation. Curr Opin Plant Biol (2011) 1.16
Characterization of the maintained vegetative phase deletions from diploid wheat and their effect on VRN2 and FT transcript levels. Mol Genet Genomics (2010) 1.15
The expression of several Cbf genes at the Fr-A2 locus is linked to frost resistance in wheat. Mol Genet Genomics (2005) 1.12
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics (2005) 1.12
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc Natl Acad Sci U S A (2009) 1.12
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome. Genome Res (2008) 1.12
Differential expansion and expression of alpha- and beta-tubulin gene families in Populus. Plant Physiol (2007) 1.12
Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex. Plant Physiol (2002) 1.08
An examination of targeted gene neighborhoods in strawberry. BMC Plant Biol (2010) 1.08
Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08
Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls. Planta (2009) 1.07
Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22). Genome (2002) 1.06
Wheat VIN3-like PHD finger genes are up-regulated by vernalization. Mol Genet Genomics (2006) 1.06