Divergent functions of orthologous NAC transcription factors in wheat and rice.

PubWeight™: 0.97‹?› | Rank: Top 15%

🔗 View Article (PMID 22278768)

Published in Plant Mol Biol on January 26, 2012

Authors

Assaf Distelfeld1, Stephen P Pearce, Raz Avni, Beatrice Scherer, Cristobal Uauy, Fernando Piston, Ann Slade, Rongrong Zhao, Jorge Dubcovsky

Author Affiliations

1: Department of Plant Sciences, University of California, Davis, CA 95616, USA.

Articles citing this

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants. Front Microbiol (2013) 1.69

Integrating cereal genomics to support innovation in the Triticeae. Funct Integr Genomics (2012) 1.06

AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots. Evol Bioinform Online (2012) 1.02

Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots. Plant Mol Biol (2014) 0.94

Biofortification of wheat grain with iron and zinc: integrating novel genomic resources and knowledge from model crops. Front Plant Sci (2014) 0.90

Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach. BMC Plant Biol (2013) 0.90

Switchgrass (Panicum virgatum L) flag leaf transcriptomes reveal molecular signatures of leaf development, senescence, and mineral dynamics. Funct Integr Genomics (2014) 0.85

Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato. Planta (2015) 0.84

Contribution of the drought tolerance-related stress-responsive NAC1 transcription factor to resistance of barley to Ramularia leaf spot. Mol Plant Pathol (2014) 0.83

Regulation of Zn and Fe transporters by the GPC1 gene during early wheat monocarpic senescence. BMC Plant Biol (2014) 0.82

kNACking on heaven's door: how important are NAC transcription factors for leaf senescence and Fe/Zn remobilization to seeds? Front Plant Sci (2013) 0.82

The identification of new cytosolic glutamine synthetase and asparagine synthetase genes in barley (Hordeum vulgare L.), and their expression during leaf senescence. J Exp Bot (2015) 0.81

Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors. BMC Plant Biol (2015) 0.81

Overexpression of a NAC transcription factor delays leaf senescence and increases grain nitrogen concentration in wheat. Plant Biol (Stuttg) (2015) 0.80

NAC Transcription Factors in Senescence: From Molecular Structure to Function in Crops. Plants (Basel) (2015) 0.78

The NAC-like gene ANTHER INDEHISCENCE FACTOR acts as a repressor that controls anther dehiscence by regulating genes in the jasmonate biosynthesis pathway in Arabidopsis. J Exp Bot (2013) 0.78

Mapping of a major QTL associated with protein content on chromosome 2B in hard red winter wheat (Triticum aestivum L.). Breed Sci (2016) 0.77

Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence. J Exp Bot (2016) 0.75

Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PLoS One (2017) 0.75

Articles cited by this

Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76

A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science (2006) 5.13

NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci (2005) 4.34

Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J (2005) 4.10

Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res (2003) 4.01

A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA. Cell (1998) 3.63

AtNAP, a NAC family transcription factor, has an important role in leaf senescence. Plant J (2006) 3.22

A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nat Biotechnol (2004) 3.03

High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell (2011) 2.77

Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science (2009) 2.63

Nitrogen metabolism and remobilization during senescence. J Exp Bot (2002) 2.61

A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol (2009) 2.57

Chlorophyll Breakdown in Senescent Leaves. Plant Physiol (1996) 2.53

RNA silencing of single and multiple members in a gene family of rice. Plant Physiol (2005) 2.10

Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J (2004) 1.99

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol Genet Genomics (2008) 1.96

Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics (2004) 1.93

Genome-wide analysis of NAC transcription factor family in rice. Gene (2010) 1.90

The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. J Exp Bot (2006) 1.85

Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) (2008) 1.74

Constructing large-scale genetic maps using an evolutionary strategy algorithm. Genetics (2003) 1.73

Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. EMBO Rep (2004) 1.72

ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. Mol Plant (2011) 1.50

Molecular regulation of leaf senescence. Curr Opin Plant Biol (2003) 1.47

High-density genetic map of durum wheat x wild emmer wheat based on SSR and DArT markers. Theor Appl Genet (2008) 1.35

Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33

Genetic and molecular characterization of the VRN2 loci in tetraploid wheat. Plant Physiol (2008) 1.30

A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics (2004) 1.29

Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta (2009) 1.28

Articles by these authors

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science (2004) 5.86

A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science (2006) 5.13

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02

Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat. Mol Genet Genomics (2005) 3.63

Comparative DNA sequence analysis of wheat and rice genomes. Genome Res (2003) 3.63

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48

A kinase-START gene confers temperature-dependent resistance to wheat stripe rust. Science (2009) 2.76

The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62

Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell (2003) 2.58

A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol (2009) 2.57

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m). Funct Integr Genomics (2002) 2.23

Molecular and structural characterization of barley vernalization genes. Plant Mol Biol (2005) 2.01

Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat. BMC Plant Biol (2012) 1.88

The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. J Exp Bot (2006) 1.85

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics (2002) 1.76

Regulation of VRN-1 vernalization genes in normal and transgenic polyploid wheat. Plant Physiol (2005) 1.74

Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62

Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J (2008) 1.61

Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering. PLoS Genet (2012) 1.58

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics (2010) 1.41

Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol (2006) 1.40

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37

High-temperature adult-plant (HTAP) stripe rust resistance gene Yr36 from Triticum turgidum ssp. dicoccoides is closely linked to the grain protein content locus Gpc-B1. Theor Appl Genet (2005) 1.35

Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain. J Exp Bot (2009) 1.34

Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS One (2011) 1.33

Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33

Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol (2011) 1.32

Genetic and molecular characterization of the VRN2 loci in tetraploid wheat. Plant Physiol (2008) 1.30

A cluster of 11 CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum. Mol Genet Genomics (2005) 1.30

Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat. Plant Mol Biol (2004) 1.23

Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23

Chondroitinase combined with rehabilitation promotes recovery of forelimb function in rats with chronic spinal cord injury. J Neurosci (2011) 1.20

Regulation of freezing tolerance and flowering in temperate cereals: the VRN-1 connection. Plant Physiol (2010) 1.20

Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.). Theor Appl Genet (2010) 1.17

Wheat flowering repressor VRN2 and promoter CO2 compete for interactions with NUCLEAR FACTOR-Y complexes. Plant J (2011) 1.16

Characterization of the maintained vegetative phase deletions from diploid wheat and their effect on VRN2 and FT transcript levels. Mol Genet Genomics (2010) 1.15

The expression of several Cbf genes at the Fr-A2 locus is linked to frost resistance in wheat. Mol Genet Genomics (2005) 1.12

Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics (2010) 1.08

Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls. Planta (2009) 1.07

Wheat VIN3-like PHD finger genes are up-regulated by vernalization. Mol Genet Genomics (2006) 1.06

TILLING in extremis. Plant Biotechnol J (2012) 1.06

Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum. Plant Mol Biol (2008) 1.05

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population. Genome Biol (2015) 1.05

Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium. Funct Integr Genomics (2009) 1.05

Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnol J (2012) 1.05

Dissecting the genetic architecture of frost tolerance in Central European winter wheat. J Exp Bot (2013) 1.05

Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat. Theor Appl Genet (2014) 1.05

The inhibitor of wax 1 locus (Iw1) prevents formation of β- and OH-β-diketones in wheat cuticular waxes and maps to a sub-cM interval on chromosome arm 2BS. Plant J (2013) 1.04

Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theor Appl Genet (2011) 1.04

The CArG-box located upstream from the transcriptional start of wheat vernalization gene VRN1 is not necessary for the vernalization response. J Hered (2009) 1.04

Decreased shoot stature and grain alpha-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat. J Exp Bot (2007) 1.03

RNA interference for wheat functional gene analysis. Transgenic Res (2007) 1.03

Genomic organization of the complex alpha-gliadin gene loci in wheat. Theor Appl Genet (2004) 1.01

Increased copy number at the HvFT1 locus is associated with accelerated flowering time in barley. Mol Genet Genomics (2013) 0.97

Molecular characterization of the duplicated meristem identity genes HvAP1a and HvAP1b in barley. Genome (2005) 0.96

Identification of a major QTL controlling the content of B-type starch granules in Aegilops. J Exp Bot (2011) 0.95

Genome-wide DNA methylation analysis in alcohol dependence. Addict Biol (2013) 0.94

Vrn-D4 is a vernalization gene located on the centromeric region of chromosome 5D in hexaploid wheat. Theor Appl Genet (2009) 0.94

Genomics reveals new landscapes for crop improvement. Genome Biol (2013) 0.93

Exogenous gibberellins induce wheat spike development under short days only in the presence of VERNALIZATION1. Plant Physiol (2013) 0.91

Comparative analysis of protein-protein interactions in the defense response of rice and wheat. BMC Genomics (2013) 0.89

A consensus framework map of durum wheat (Triticum durum Desf.) suitable for linkage disequilibrium analysis and genome-wide association mapping. BMC Genomics (2014) 0.89

Large deletions in the CBF gene cluster at the Fr-B2 locus are associated with reduced frost tolerance in wheat. Theor Appl Genet (2013) 0.87

Fine mapping and epistatic interactions of the vernalization gene VRN-D4 in hexaploid wheat. Mol Genet Genomics (2013) 0.86

TILLING and associated technologies. J Integr Plant Biol (2010) 0.85

Molecular characterization of durum and common wheat recombinant lines carrying leaf rust resistance (Lr19) and yellow pigment (Y) genes from Lophopyrum ponticum. Theor Appl Genet (2005) 0.85

Fine mapping and characterization of Sr21, a temperature-sensitive diploid wheat resistance gene effective against the Puccinia graminis f. sp. tritici Ug99 race group. Theor Appl Genet (2015) 0.84

Cloning and comparative analysis of carotenoid β-hydroxylase genes provides new insights into carotenoid metabolism in tetraploid (Triticum turgidum ssp. durum) and hexaploid (Triticum aestivum) wheat grains. Plant Mol Biol (2012) 0.83

Role of enolase-1 in response to hypoxia in breast cancer: exploring the mechanisms of action. Oncol Rep (2013) 0.83

Molecular Mapping of the Stb4 Gene for Resistance to Septoria tritici Blotch in Wheat. Phytopathology (2004) 0.83

Mapping a region within the 1RS.1BL translocation in common wheat affecting grain yield and canopy water status. Theor Appl Genet (2014) 0.83

Regulation of Zn and Fe transporters by the GPC1 gene during early wheat monocarpic senescence. BMC Plant Biol (2014) 0.82

A highly sensitive H2O2 sensor based on zinc oxide nanorod arrays film sensing interface. Analyst (2010) 0.81

A comparative approach expands the protein-protein interaction node of the immune receptor XA21 in wheat and rice. Genome (2013) 0.78

Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis. Comp Funct Genomics (2002) 0.78

Yr36 confers partial resistance at temperatures below 18°C to U.K. isolates of Puccinia striiformis. Phytopathology (2014) 0.77

A change in temperature modulates defence to yellow (stripe) rust in wheat line UC1041 independently of resistance gene Yr36. BMC Plant Biol (2014) 0.75