Published in Mol Cell on December 22, 2004
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Profiling alternatively spliced mRNA isoforms for prostate cancer classification. BMC Bioinformatics (2006) 1.39
Splicing factor and exon profiling across human tissues. Nucleic Acids Res (2010) 1.37
Exon expression profiling reveals stimulus-mediated exon use in neural cells. Genome Biol (2007) 1.35
Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. Bioinformatics (2012) 1.34
RNA protein interaction in neurons. Annu Rev Neurosci (2013) 1.31
Sex-specific splicing in Drosophila: widespread occurrence, tissue specificity and evolutionary conservation. Genetics (2008) 1.30
A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis. PLoS One (2009) 1.23
RBFOX2 is an important regulator of mesenchymal tissue-specific splicing in both normal and cancer tissues. Mol Cell Biol (2012) 1.22
Entropy measures quantify global splicing disorders in cancer. PLoS Comput Biol (2008) 1.18
The (in)dependence of alternative splicing and gene duplication. PLoS Comput Biol (2007) 1.17
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Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function. Mol Biol Evol (2012) 1.12
The effect of intron length on exon creation ratios during the evolution of mammalian genomes. RNA (2008) 1.07
Predicting functional alternative splicing by measuring RNA selection pressure from multigenome alignments. PLoS Comput Biol (2009) 1.06
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Alternative splicing networks regulated by signaling in human T cells. RNA (2012) 1.03
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Mutations of glucocorticoid receptor differentially affect AF2 domain activity in a steroid-selective manner to alter the potency and efficacy of gene induction and repression. Biochemistry (2008) 1.02
Structural implication of splicing stochastics. Nucleic Acids Res (2009) 1.01
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The beta-catenin/TCF4 pathway modifies alternative splicing through modulation of SRp20 expression. RNA (2008) 1.00
Evolution of alternative splicing in primate brain transcriptomes. Hum Mol Genet (2010) 0.99
Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. Hum Mol Genet (2009) 0.99
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A glycine-rich domain of hnRNP H/F promotes nucleocytoplasmic shuttling and nuclear import through an interaction with transportin 1. Mol Cell Biol (2010) 0.98
Genome-wide survey of allele-specific splicing in humans. BMC Genomics (2008) 0.97
Regulation of alternative splicing by the circadian clock and food related cues. Genome Biol (2012) 0.97
MAASE: an alternative splicing database designed for supporting splicing microarray applications. RNA (2005) 0.96
Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells. Genome Biol (2009) 0.96
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Assessing the fraction of short-distance tandem splice sites under purifying selection. RNA (2008) 0.95
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Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3. BMC Genet (2009) 0.92
Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status. BMC Med Genomics (2011) 0.91
Differential recruitment of pre-mRNA splicing factors to alternatively spliced transcripts in vivo. PLoS Biol (2005) 0.90
Revisiting the identification of canonical splice isoforms through integration of functional genomics and proteomics evidence. Proteomics (2014) 0.90
Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates. PLoS One (2009) 0.90
The human transcriptome: an unfinished story. Genes (Basel) (2012) 0.86
Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing. PLoS Comput Biol (2005) 0.86
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics (2011) 0.86
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet (2008) 24.51
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature (2006) 24.29
The genetic landscape of a cell. Science (2010) 16.52
Structures of the bacterial ribosome at 3.5 A resolution. Science (2005) 12.63
A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
The DNA-encoded nucleosome organization of a eukaryotic genome. Nature (2008) 11.41
Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature (2011) 10.16
Diversity and complexity in DNA recognition by transcription factors. Science (2009) 9.07
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat Biotechnol (2010) 9.01
The first metal-organic framework (MOF) of Imazethapyr and its SHG, piezoelectric and ferroelectric properties. Dalton Trans (2008) 8.86
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell (2010) 8.66
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell (2007) 8.43
FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics (2002) 8.01
Regulation of alternative splicing by histone modifications. Science (2010) 7.98
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell (2008) 7.93
An RNA map predicting Nova-dependent splicing regulation. Nature (2006) 7.63
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell (2005) 7.21
Hydrogen-bonded ferroelectrics based on metal-organic coordination. J Am Chem Soc (2009) 6.69
Most "dark matter" transcripts are associated with known genes. PLoS Biol (2010) 6.60
Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell (2006) 6.42
Deciphering the splicing code. Nature (2010) 6.27
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell (2006) 5.72
Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat Biotechnol (2003) 5.60
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol Cell (2003) 5.57
Exploration of essential gene functions via titratable promoter alleles. Cell (2004) 5.21
DNA-binding specificities of human transcription factors. Cell (2013) 5.14
A compendium of RNA-binding motifs for decoding gene regulation. Nature (2013) 4.91
Probing microRNAs with microarrays: tissue specificity and functional inference. RNA (2004) 4.91
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo. EMBO J (2010) 4.78
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
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Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Mol Cell (2007) 4.58
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Diisopropylammonium chloride: a ferroelectric organic salt with a high phase transition temperature and practical utilization level of spontaneous polarization. Adv Mater (2011) 4.30
High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell (2004) 4.18
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast. Cell (2006) 4.03
Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell (2006) 3.86
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat Methods (2009) 3.73
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
Identification of a bacterial type III effector family with G protein mimicry functions. Cell (2006) 3.47
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities. Genome Res (2010) 3.46
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol (2009) 3.44
Using expression profiling data to identify human microRNA targets. Nat Methods (2007) 3.37
Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression. Genes Dev (2006) 3.18
Improved virological outcomes in British Columbia concomitant with decreasing incidence of HIV type 1 drug resistance detection. Clin Infect Dis (2010) 3.12
A panoramic view of yeast noncoding RNA processing. Cell (2003) 3.11
The synthetic genetic interaction spectrum of essential genes. Nat Genet (2005) 3.06
G+C content dominates intrinsic nucleosome occupancy. BMC Bioinformatics (2009) 3.05
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell (2011) 2.89
A multiferroic perdeutero metal-organic framework. Angew Chem Int Ed Engl (2011) 2.88
A quantitative atlas of polyadenylation in five mammals. Genome Res (2012) 2.87
DAPK1 interaction with NMDA receptor NR2B subunits mediates brain damage in stroke. Cell (2010) 2.87
Global survey of escape from X inactivation by RNA-sequencing in mouse. Genome Res (2010) 2.87
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Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. Proc Natl Acad Sci U S A (2004) 2.80
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol (2008) 2.73
SRm160 splicing coactivator promotes transcript 3'-end cleavage. Mol Cell Biol (2002) 2.73
Why are there still over 1000 uncharacterized yeast genes? Genetics (2007) 2.71
SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase. Dev Cell (2007) 2.64
Net primary production of Chinese croplands from 1950 to 1999. Ecol Appl (2007) 2.61
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Structural basis for mRNA and tRNA positioning on the ribosome. Proc Natl Acad Sci U S A (2006) 2.55
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat Struct Mol Biol (2007) 2.54
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming. Nature (2013) 2.49