Published in OMICS on January 01, 2005
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res (2006) 2.21
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol (2007) 2.03
The function of introns. Front Genet (2012) 1.42
NATsDB: Natural Antisense Transcripts DataBase. Nucleic Acids Res (2006) 1.33
Long non-coding RNA expression profiling of mouse testis during postnatal development. PLoS One (2013) 1.15
Computational methods in noncoding RNA research. J Math Biol (2007) 1.08
Altered antisense-to-sense transcript ratios in breast cancer. Proc Natl Acad Sci U S A (2010) 1.08
Androgen responsive intronic non-coding RNAs. BMC Biol (2007) 1.07
Genomic landscape of developing male germ cells. Birth Defects Res C Embryo Today (2009) 1.00
Plant spliceosomal introns: not only cut and paste. Curr Genomics (2008) 0.94
An emerging role for long non-coding RNA dysregulation in neurological disorders. Int J Mol Sci (2013) 0.82
Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19
Programming the magnitude and persistence of antibody responses with innate immunity. Nature (2011) 5.18
Systems vaccinology. Immunity (2010) 2.36
The T helper type 2 response to cysteine proteases requires dendritic cell-basophil cooperation via ROS-mediated signaling. Nat Immunol (2010) 2.20
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol (2007) 2.03
Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene (2004) 2.02
Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics (2008) 1.93
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proc Natl Acad Sci U S A (2003) 1.79
Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Med (2011) 1.78
Phenotype, function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adults. J Immunol (2011) 1.66
The tegument surface membranes of the human blood parasite Schistosoma mansoni: a proteomic analysis after differential extraction. Proteomics (2006) 1.63
Schistosoma mansoni tegument protein Sm29 is able to induce a Th1-type of immune response and protection against parasite infection. PLoS Negl Trop Dis (2008) 1.58
Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck, and thyroid cancer. Cancer Res (2005) 1.47
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Mol Cancer (2011) 1.42
Perspectives of Long Non-Coding RNAs in Cancer Diagnostics. Front Genet (2012) 1.41
ESTWeb: bioinformatics services for EST sequencing projects. Bioinformatics (2003) 1.37
Chronic but not acute virus infection induces sustained expansion of myeloid suppressor cell numbers that inhibit viral-specific T cell immunity. Immunity (2013) 1.33
DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence. J Bacteriol (2004) 1.29
Schistosoma mansoni TGF-beta receptor II: role in host ligand-induced regulation of a schistosome target gene. PLoS Pathog (2006) 1.29
Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts. Genome Res (2010) 1.22
Gene expression profiling reveals molecular marker candidates of laryngeal squamous cell carcinoma. Oncol Rep (2009) 1.17
Whole-genome analysis of transporters in the plant pathogen Xylella fastidiosa. Microbiol Mol Biol Rev (2002) 1.15
Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in nonhuman primates. Blood (2012) 1.15
The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation. PLoS Genet (2013) 1.14
Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci. Genomics (2008) 1.12
Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni. J Virol (2004) 1.09
Schistosomes--proteomics studies for potential novel vaccines and drug targets. Drug Discov Today (2009) 1.07
Androgen responsive intronic non-coding RNAs. BMC Biol (2007) 1.07
Identification of 18 new transcribed retrotransposons in Schistosoma mansoni. Biochem Biophys Res Commun (2005) 1.06
Interference with hemozoin formation represents an important mechanism of schistosomicidal action of antimalarial quinoline methanols. PLoS Negl Trop Dis (2009) 1.06
Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers. Proc Natl Acad Sci U S A (2009) 1.04
Schistosomiasis--a century searching for chemotherapeutic drugs. Parasitol Res (2006) 1.03
Identification of protein-coding and intronic noncoding RNAs down-regulated in clear cell renal carcinoma. Mol Carcinog (2008) 1.02
Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays. BMC Genomics (2006) 1.01
Gene expression arrays in cancer research: methods and applications. Crit Rev Oncol Hematol (2005) 1.01
Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition. Cell Microbiol (2012) 1.00
Mapping transposon insertion sites by touchdown PCR and hybrid degenerate primers. Biotechniques (2005) 1.00
SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily. BMC Evol Biol (2006) 1.00
Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms. PLoS One (2013) 0.99
Origins of the Xylella fastidiosa prophage-like regions and their impact in genome differentiation. PLoS One (2008) 0.99
Systems biological approaches to measure and understand vaccine immunity in humans. Semin Immunol (2013) 0.98
Zerg: a very fast BLAST parser library. Bioinformatics (2003) 0.97
A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE. BMC Genomics (2007) 0.97
Gene expression profile of mesenchymal stem cells from paired umbilical cord units: cord is different from blood. Stem Cell Rev (2009) 0.96
The iron stimulon of Xylella fastidiosa includes genes for type IV pilus and colicin V-like bacteriocins. J Bacteriol (2008) 0.96
Long non-coding RNAs and their implications in cancer epigenetics. Biosci Rep (2013) 0.95
Apert p.Ser252Trp mutation in FGFR2 alters osteogenic potential and gene expression of cranial periosteal cells. Mol Med (2007) 0.95
Gender biased differential alternative splicing patterns of the transcriptional cofactor CA150 gene in Schistosoma mansoni. Mol Biochem Parasitol (2006) 0.93
Immunity to viruses: learning from successful human vaccines. Immunol Rev (2013) 0.92
Influence of Ecto-nucleoside triphosphate diphosphohydrolase activity on Trypanosoma cruzi infectivity and virulence. PLoS Negl Trop Dis (2009) 0.89
Screening the Schistosoma mansoni transcriptome for genes differentially expressed in the schistosomulum stage in search for vaccine candidates. Parasitol Res (2010) 0.89
Transcriptome analyses of inhibitor-treated schistosome females provide evidence for cooperating Src-kinase and TGFβ receptor pathways controlling mitosis and eggshell formation. PLoS Pathog (2013) 0.89
The role of prophage in plant-pathogenic bacteria. Annu Rev Phytopathol (2013) 0.89
Systems biology of vaccination in the elderly. Curr Top Microbiol Immunol (2013) 0.88
Characterization and immunolocalization of an NTP diphosphohydrolase of Trypanosoma cruzi. Biochem Biophys Res Commun (2004) 0.88
Molecular characterization and immunolocalization of Schistosoma mansoni ATP-diphosphohydrolase. Biochem Biophys Res Commun (2003) 0.87
Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq. Exp Parasitol (2011) 0.87
Effects of curcumin on the parasite Schistosoma mansoni: a transcriptomic approach. Mol Biochem Parasitol (2012) 0.87
Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions. BMC Genomics (2007) 0.87
Human malaria parasites display a receptor for activated C kinase ortholog. Biochem Biophys Res Commun (2003) 0.86
Identification of the Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile. PLoS Negl Trop Dis (2009) 0.84
Non-coding RNAs in schistosomes: an unexplored world. An Acad Bras Cienc (2011) 0.84
Effect of human TGF-β on the gene expression profile of Schistosoma mansoni adult worms. Mol Biochem Parasitol (2012) 0.84
Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases. RNA Biol (2012) 0.84
Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin. PLoS Negl Trop Dis (2013) 0.84
Splice variants of TLE family genes and up-regulation of a TLE3 isoform in prostate tumors. Biochem Biophys Res Commun (2007) 0.84
ARHGAP21 is a RhoGAP for RhoA and RhoC with a role in proliferation and migration of prostate adenocarcinoma cells. Biochim Biophys Acta (2012) 0.83
RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors. Biochem Biophys Res Commun (2004) 0.83
Characterization of Schistosoma mansoni ATPDase2 gene, a novel apyrase family member. Biochem Biophys Res Commun (2006) 0.82
Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts. BMC Med Genomics (2010) 0.82
Schistosoma mansoni histones: from transcription to chromatin regulation; an in silico analysis. Mol Biochem Parasitol (2012) 0.82
Protein-coding genes and long noncoding RNAs are differentially expressed in dasatinib-treated chronic myeloid leukemia patients with resistance to imatinib. Hematology (2013) 0.80
Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome. RNA Biol (2015) 0.79
Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni. Int J Parasitol (2009) 0.79
Loss of caspase 7 expression is associated with poor prognosis in renal cell carcinoma clear cell subtype. Urology (2013) 0.79
Immunization with tegument nucleotidases associated with a subcurative praziquantel treatment reduces worm burden following Schistosoma mansoni challenge. PeerJ (2013) 0.79
The Brazilian contribution to the study of the Schistosoma mansoni transcriptome. Acta Trop (2008) 0.78
Use of degenerate primers and touchdown PCR for construction of cDNA libraries. Biotechniques (2002) 0.78
Curupira-1 and Curupira-2, two novel Mutator-like DNA transposons from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. Parasitology (2011) 0.75
Corrigendum: HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Sci Rep (2017) 0.75
E Schistosoma mansoni at the molecular and cellular biology of helminth parasites VI meeting. An Acad Bras Cienc (2011) 0.75