Published in Genome Biol on April 29, 2005
Chemical magnetoreception in birds: the radical pair mechanism. Proc Natl Acad Sci U S A (2009) 2.27
Human and Drosophila cryptochromes are light activated by flavin photoreduction in living cells. PLoS Biol (2008) 2.17
Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell (2007) 1.81
How a cyanobacterium tells time. Curr Opin Microbiol (2008) 1.51
The action mechanisms of plant cryptochromes. Trends Plant Sci (2011) 1.51
Avian ultraviolet/violet cones identified as probable magnetoreceptors. PLoS One (2011) 1.43
Reaction mechanism of Drosophila cryptochrome. Proc Natl Acad Sci U S A (2010) 1.42
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Magnetic-field effect on the photoactivation reaction of Escherichia coli DNA photolyase. Proc Natl Acad Sci U S A (2008) 1.35
Tripping the light fantastic: blue-light photoreceptors as examples of environmentally modulated protein-protein interactions. Biochemistry (2010) 1.32
Formation of nuclear bodies of Arabidopsis CRY2 in response to blue light is associated with its blue light-dependent degradation. Plant Cell (2009) 1.31
Light-activated cryptochrome reacts with molecular oxygen to form a flavin-superoxide radical pair consistent with magnetoreception. J Biol Chem (2011) 1.27
Derepression of the NC80 motif is critical for the photoactivation of Arabidopsis CRY2. Proc Natl Acad Sci U S A (2007) 1.26
Ultrafast dynamics of flavins in five redox states. J Am Chem Soc (2008) 1.25
Direct observation of a photoinduced radical pair in a cryptochrome blue-light photoreceptor. Angew Chem Int Ed Engl (2009) 1.24
Structure and function of photolyase and in vivo enzymology: 50th anniversary. J Biol Chem (2008) 1.23
Light regulation of metabolic pathways in fungi. Appl Microbiol Biotechnol (2009) 1.22
More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development. Mol Biol Cell (2008) 1.20
Another place, another timer: Marine species and the rhythms of life. Bioessays (2011) 1.19
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep (2009) 1.15
Neurospora illuminates fungal photoreception. Fungal Genet Biol (2010) 1.15
Regulation of conidiation by light in Aspergillus nidulans. Genetics (2011) 1.13
Optogenetic control of cell function using engineered photoreceptors. Biol Cell (2012) 1.09
Light-dependent magnetic compass orientation in amphibians and insects: candidate receptors and candidate molecular mechanisms. J R Soc Interface (2010) 1.08
Transcriptome profiling of peanut gynophores revealed global reprogramming of gene expression during early pod development in darkness. BMC Genomics (2013) 1.07
Discovering functional novelty in metagenomes: examples from light-mediated processes. J Bacteriol (2008) 1.06
Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proc Natl Acad Sci U S A (2013) 1.06
Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen. Genes Dev (2008) 1.03
Identification of a novel cryptochrome differentiating domain required for feedback repression in circadian clock function. J Biol Chem (2012) 1.02
Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA. EMBO J (2011) 1.02
Possible Mechanisms Underlying the Therapeutic Effects of Transcranial Magnetic Stimulation. Front Hum Neurosci (2015) 1.01
Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function. Chem Rev (2014) 1.00
Effect of magnetic fields on cryptochrome-dependent responses in Arabidopsis thaliana. J R Soc Interface (2009) 1.00
Genetic and molecular characterization of a cryptochrome from the filamentous fungus Neurospora crassa. Eukaryot Cell (2010) 0.99
A photolyase-like protein from Agrobacterium tumefaciens with an iron-sulfur cluster. PLoS One (2011) 0.97
Sensing magnetic directions in birds: radical pair processes involving cryptochrome. Biosensors (Basel) (2014) 0.97
Circadian clock gene expression in the coral Favia fragum over diel and lunar reproductive cycles. PLoS One (2011) 0.97
Functional analysis of amino-terminal domains of the photoreceptor phytochrome B. Plant Physiol (2010) 0.96
Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways. Plant Cell (2014) 0.94
Diurnally entrained anticipatory behavior in archaea. PLoS One (2009) 0.94
An inositol polyphosphate 5-phosphatase functions in PHOTOTROPIN1 signaling in Arabidopis by altering cytosolic Ca2+. Plant Cell (2008) 0.93
Effects of disorder and motion in a radical pair magnetoreceptor. J R Soc Interface (2009) 0.93
Cryptochrome 1 contributes to blue-light sensing in pea. Plant Physiol (2005) 0.93
Fly cryptochrome and the visual system. Proc Natl Acad Sci U S A (2013) 0.91
Origin of light-induced spin-correlated radical pairs in cryptochrome. J Phys Chem B (2010) 0.89
Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus. BMC Microbiol (2007) 0.89
A gain-of-function mutation of Arabidopsis cryptochrome1 promotes flowering. Plant Physiol (2010) 0.88
Phototropism: mechanism and outcomes. Arabidopsis Book (2010) 0.88
Genome-wide analysis of light-dependent transcript accumulation patterns during early stages of Arabidopsis seedling deetiolation. Plant Physiol (2011) 0.88
Human cryptochrome-1 confers light independent biological activity in transgenic Drosophila correlated with flavin radical stability. PLoS One (2012) 0.85
Key dynamics of conserved asparagine in a cryptochrome/photolyase family protein by fourier transform infrared spectroscopy. Biochemistry (2010) 0.83
Mechanisms of geomagnetic field influence on gene expression using influenza as a model system: basics of physical epidemiology. Int J Environ Res Public Health (2010) 0.82
Genomic identification of a putative circadian system in the cladoceran crustacean Daphnia pulex. Comp Biochem Physiol Part D Genomics Proteomics (2011) 0.80
Dynamics and mechanisms of DNA repair by photolyase. Phys Chem Chem Phys (2015) 0.80
Impact of the N5-proximal Asn on the thermodynamic and kinetic stability of the semiquinone radical in photolyase. J Biol Chem (2010) 0.79
De novo assembly and characterization of the transcriptome of seagrass Zostera marina using Illumina paired-end sequencing. PLoS One (2014) 0.79
A Cryptochrome 2 mutation yields advanced sleep phase in humans. Elife (2016) 0.78
Effects of the cryptochrome CryB from Rhodobacter sphaeroides on global gene expression in the dark or blue light or in the presence of singlet oxygen. PLoS One (2012) 0.78
Signaling mechanisms of plant cryptochromes in Arabidopsis thaliana. J Plant Res (2016) 0.77
Fungal cryptochrome with DNA repair activity reveals an early stage in cryptochrome evolution. Proc Natl Acad Sci U S A (2015) 0.77
Does evening sun increase the risk of skin cancer? Proc Natl Acad Sci U S A (2011) 0.77
Multiple interactions between cryptochrome and phototropin blue-light signalling pathways in Arabidopsis thaliana. Planta (2008) 0.77
dbCRY: a Web-based comparative and evolutionary genomics platform for blue-light receptors. Database (Oxford) (2014) 0.77
Kinetic studies on the oxidation of semiquinone and hydroquinone forms of Arabidopsis cryptochrome by molecular oxygen. FEBS Open Bio (2015) 0.77
Eumetazoan cryptochrome phylogeny and evolution. Genome Biol Evol (2015) 0.76
Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes. Sci Rep (2015) 0.76
Evolutionary History of the Photolyase/Cryptochrome Superfamily in Eukaryotes. PLoS One (2015) 0.76
Investigation of real-time photorepair activity on DNA via surface plasmon resonance. PLoS One (2012) 0.75
Theoretical analyses on a flipping mechanism of UV-induced DNA damage. Biophys Physicobiol (2016) 0.75
The Roles of Several Residues of Escherichia coli DNA Photolyase in the Highly Efficient Photo-Repair of Cyclobutane Pyrimidine Dimers. J Nucleic Acids (2010) 0.75
Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato. FEBS Open Bio (2017) 0.75
The Trichoderma reesei Cry1 protein is a member of the cryptochrome/photolyase family with 6-4 photoproduct repair activity. PLoS One (2014) 0.75
FAD Regulates CRYPTOCHROME Protein Stability and Circadian Clock in Mice. Cell Rep (2017) 0.75
How can EPR spectroscopy help to unravel molecular mechanisms of flavin-dependent photoreceptors? Front Mol Biosci (2015) 0.75
Neuronal networks in mental diseases and neuropathic pain: Beyond brain derived neurotrophic factor and collapsin response mediator proteins. World J Psychiatry (2016) 0.75
Potential Impact of Geomagnetic Field in Transcranial Magnetic Stimulation for the Treatment of Neurodegenerative Diseases. Front Hum Neurosci (2017) 0.75
Haeme oxygenase protects against UV light DNA damages in the retina in clock-dependent manner. Sci Rep (2017) 0.75
A simple method using ex vivo culture of hair follicle tissue to investigate intrinsic circadian characteristics in humans. Sci Rep (2017) 0.75
HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature (1993) 9.23
mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell (1999) 8.38
Posttranslational mechanisms regulate the mammalian circadian clock. Cell (2001) 7.93
Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms. Nature (1999) 7.86
Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency. Proc Natl Acad Sci U S A (2000) 6.81
Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science (2004) 6.52
Melanopsin and rod-cone photoreceptive systems account for all major accessory visual functions in mice. Nature (2003) 5.84
Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. Chem Rev (2003) 5.17
Regulation of flowering time by Arabidopsis photoreceptors. Science (1998) 5.11
The cryb mutation identifies cryptochrome as a circadian photoreceptor in Drosophila. Cell (1998) 4.81
Light-independent role of CRY1 and CRY2 in the mammalian circadian clock. Science (1999) 4.43
Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science (1998) 4.40
Melanopsin (Opn4) requirement for normal light-induced circadian phase shifting. Science (2002) 4.24
CRY, a Drosophila clock and light-regulated cryptochrome, is a major contributor to circadian rhythm resetting and photosensitivity. Cell (1998) 4.22
Crystal structure of DNA photolyase from Escherichia coli. Science (1995) 4.21
Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature (2002) 4.13
Light-dependent sequestration of TIMELESS by CRYPTOCHROME. Science (1999) 4.09
A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2. Nat Genet (2001) 3.97
Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell (2001) 3.60
Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1. Science (1995) 3.28
Direct interaction of Arabidopsis cryptochromes with COP1 in light control development. Science (2001) 3.19
Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science (1996) 2.74
Cryptochrome structure and signal transduction. Annu Rev Plant Biol (2003) 2.58
The C termini of Arabidopsis cryptochromes mediate a constitutive light response. Cell (2000) 2.53
The circadian regulatory proteins BMAL1 and cryptochromes are substrates of casein kinase Iepsilon. J Biol Chem (2002) 2.48
Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 2.48
Role of mouse cryptochrome blue-light photoreceptor in circadian photoresponses. Science (1998) 2.38
Roles of the two Drosophila CRYPTOCHROME structural domains in circadian photoreception. Science (2004) 2.19
Cryptochromes: enabling plants and animals to determine circadian time. Cell (2003) 2.14
Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry (1995) 2.14
Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell (2003) 2.11
Regulation of Arabidopsis cryptochrome 2 by blue-light-dependent phosphorylation. Nature (2002) 1.96
Circadian and light-induced transcription of clock gene Per1 depends on histone acetylation and deacetylation. Mol Cell Biol (2004) 1.89
A new role for cryptochrome in a Drosophila circadian oscillator. Nature (2001) 1.85
Putative human blue-light photoreceptors hCRY1 and hCRY2 are flavoproteins. Biochemistry (1996) 1.82
A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts. Nature (1993) 1.79
Regulation of photoperiodic flowering by Arabidopsis photoreceptors. Proc Natl Acad Sci U S A (2003) 1.79
Reduced pupillary light responses in mice lacking cryptochromes. Science (2003) 1.72
The Arabidopsis blue light receptor cryptochrome 2 is a nuclear protein regulated by a blue light-dependent post-transcriptional mechanism. Plant J (1999) 1.63
From seed to seed: the role of photoreceptors in Arabidopsis development. Dev Biol (2003) 1.54
Functional redundancy of cryptochromes and classical photoreceptors for nonvisual ocular photoreception in mice. Proc Natl Acad Sci U S A (2000) 1.50
Blue light-dependent in vivo and in vitro phosphorylation of Arabidopsis cryptochrome 1. Plant Cell (2003) 1.47
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Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. Eur J Biochem (2003) 1.38
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Bacterial cryptochrome and photolyase: characterization of two photolyase-like genes of Synechocystis sp. PCC6803. Nucleic Acids Res (2000) 1.25
Nuclear localization of the Arabidopsis blue light receptor cryptochrome 2. Plant J (1999) 1.25
Nuclear localization and transcriptional repression are confined to separable domains in the circadian protein CRYPTOCHROME. Curr Biol (2003) 1.03
Expression of the blue-light receptor cryptochrome in the human retina. Invest Ophthalmol Vis Sci (2003) 0.95
Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. J Biol Chem (2003) 2.66
Salt-sensitive hypertension in circadian clock-deficient Cry-null mice involves dysregulated adrenal Hsd3b6. Nat Med (2009) 2.30
Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell (2003) 2.11
Infrared laser-mediated gene induction in targeted single cells in vivo. Nat Methods (2008) 1.78
Involvement of urinary bladder Connexin43 and the circadian clock in coordination of diurnal micturition rhythm. Nat Commun (2012) 1.74
Cryptochrome is present in the compound eyes and a subset of Drosophila's clock neurons. J Comp Neurol (2008) 1.67
A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes. Mech Dev (2004) 1.65
Role of Gln1029 in the photoactivation processes of the LOV2 domain in adiantum phytochrome3. Biochemistry (2004) 1.53
Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A (2009) 1.36
Identification of cryptochrome DASH from vertebrates. Genes Cells (2004) 1.36
Serine phosphorylation of mCRY1 and mCRY2 by mitogen-activated protein kinase. Genes Cells (2004) 1.34
Generation of medaka gene knockout models by target-selected mutagenesis. Genome Biol (2006) 1.30
Reduced alpha-adrenoceptor responsiveness and enhanced baroreflex sensitivity in Cry-deficient mice lacking a biological clock. J Physiol (2005) 1.22
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity. EMBO Rep (2009) 1.15
Zebrafish CRY represses transcription mediated by CLOCK-BMAL heterodimer without inhibiting its binding to DNA. Genes Cells (2002) 1.14
Circadian and circalunar clock interactions in a marine annelid. Cell Rep (2013) 1.08
Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase. J Biol Chem (2006) 1.04
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes. Plant Cell Environ (2010) 1.04
Functional and structural analyses of cryptochrome. Vertebrate CRY regions responsible for interaction with the CLOCK:BMAL1 heterodimer and its nuclear localization. J Biol Chem (2003) 1.03
Photoreaction cycle of the light, oxygen, and voltage domain in FKF1 determined by low-temperature absorption spectroscopy. Biochemistry (2006) 1.03
Dmrt1 mutation causes a male-to-female sex reversal after the sex determination by Dmy in the medaka. Chromosome Res (2012) 1.01
Photoactivation of the flavin cofactor in Xenopus laevis (6 - 4) photolyase: observation of a transient tyrosyl radical by time-resolved electron paramagnetic resonance. Proc Natl Acad Sci U S A (2002) 1.01
High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library. BMC Mol Biol (2010) 1.00
Circadian intraocular pressure rhythm is generated by clock genes. Invest Ophthalmol Vis Sci (2006) 0.99
Human papillomavirus and p53 mutations in head and neck squamous cell carcinoma among Japanese population. Cancer Sci (2014) 0.98
Infrared laser-mediated local gene induction in medaka, zebrafish and Arabidopsis thaliana. Dev Growth Differ (2009) 0.96
Circadian regulation of food-anticipatory activity in molecular clock-deficient mice. PLoS One (2012) 0.93
Clock gene defect disrupts light-dependency of autonomic nerve activity. Biochem Biophys Res Commun (2007) 0.92
Common light signaling pathways controlling DNA repair and circadian clock entrainment in zebrafish. Cell Cycle (2009) 0.91
DNA damage-induced ubiquitylation of RFC2 subunit of replication factor C complex. J Biol Chem (2008) 0.90
Similarities and differences between cyclobutane pyrimidine dimer photolyase and (6-4) photolyase as revealed by resonance Raman spectroscopy: Electron transfer from the FAD cofactor to ultraviolet-damaged DNA. J Biol Chem (2006) 0.90
New role of zCRY and zPER2 as regulators of sub-cellular distributions of zCLOCK and zBMAL proteins. Nucleic Acids Res (2003) 0.89
Autonomic and cardiovascular responses to scent stimulation are altered in cry KO mice. Neurosci Lett (2006) 0.88
ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish. Mol Biol Cell (2013) 0.87
Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses. J Biol Chem (2004) 0.87
Characteristic structure and environment in FAD cofactor of (6-4) photolyase along function revealed by resonance Raman spectroscopy. J Phys Chem B (2006) 0.84
FTIR study of light-dependent activation and DNA repair processes of (6-4) photolyase. Biochemistry (2011) 0.83
Chemical synthesis of oligodeoxyribonucleotides containing the Dewar valence isomer of the (6-4) photoproduct and their use in (6-4) photolyase studies. Nucleic Acids Res (2006) 0.83
Circadian clock-controlled diurnal oscillation of Ras/ERK signaling in mouse liver. Proc Jpn Acad Ser B Phys Biol Sci (2013) 0.82
Molecular analysis of Dec1 and Dec2 in the peripheral circadian clock of zebrafish photosensitive cells. Biochem Biophys Res Commun (2006) 0.82
Identification of a functional medaka heat shock promoter and characterization of its ability to induce exogenous gene expression in medaka in vitro and in vivo. Zoolog Sci (2010) 0.81
Involvement of electron transfer in the photoreaction of zebrafish Cryptochrome-DASH. Photochem Photobiol (2008) 0.81
Mitotic slippage underlies the relationship between p53 dysfunction and the induction of large micronuclei by colcemid. Mutagenesis (2013) 0.80
Role of angiotensin and the clock system in the circadian regulation of plasminogen activator inhibitor-1. Kobe J Med Sci (2009) 0.80
Involvement of stress kinase mitogen-activated protein kinase kinase 7 in regulation of mammalian circadian clock. J Biol Chem (2012) 0.80
Light-induced conformational change and product release in DNA repair by (6-4) photolyase. J Am Chem Soc (2011) 0.80
A model for triplet mutation formation based on error-prone translesional DNA synthesis opposite UV photolesions. DNA Repair (Amst) (2007) 0.80
Loss of circadian rhythm and light-induced suppression of pineal melatonin levels in Cry1 and Cry2 double-deficient mice. Genes Cells (2010) 0.79
Determination of the g-matrix orientation in flavin radicals by high-field/high-frequency electron-nuclear double resonance. Magn Reson Chem (2005) 0.78
Development of a convenient in vitro fertilization method using interspecific hybrids between Oryzias latipes and Oryzias curvinotus. Dev Growth Differ (2007) 0.77
A molecular clock regulates angiopoietin-like protein 2 expression. PLoS One (2013) 0.77
Pyrimidine (6-4) pyrimidone photoproduct mapping after sublethal UVC doses: nucleotide resolution using terminal transferase-dependent PCR. Photochem Photobiol (2007) 0.77
Somatic mutation in larvae of the silkworm, Bombyx mori, induced by heavy ion irradiation to diapause eggs. J Radiat Res (2002) 0.76
Imaging plant leaves to determine changes in radioactive contamination status in Fukushima, Japan. Health Phys (2014) 0.75
A rapid and easy method for the qualitative detection of intracellular deposition of inhaled nanoparticles. Nanomedicine (2011) 0.75
Synthesis of oligonucleotides containing the Dewar valence isomer of the (6-4) photoproduct and their application to (6-4) photolyase studies. Nucleic Acids Symp Ser (Oxf) (2006) 0.75
Loss of follicle-stimulating hormone receptor function causes masculinization and suppression of ovarian development in genetically female medaka. Endocrinology (2014) 0.75
Assay method for Escherichia coli photolyase activity using single-strand cis-syn cyclobutane pyrimidine dimer DNA as substrate. Anal Biochem (2004) 0.75
Identification of radiation-sensitive mutants in the Medaka, Oryzias latipes. Mech Dev (2004) 0.75