Published in New Phytol on July 01, 2005
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci U S A (2009) 3.13
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol (2008) 2.51
Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. Plant Cell (2006) 1.92
An optimized procedure greatly improves EST vector contamination removal. BMC Genomics (2007) 1.63
Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genome Biol Evol (2009) 1.44
Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication. Plant Physiol (2006) 1.32
TCP transcription factors predate the emergence of land plants. J Mol Evol (2007) 1.27
The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression. BMC Plant Biol (2009) 1.27
Protease gene families in Populus and Arabidopsis. BMC Plant Biol (2006) 1.22
Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics (2008) 1.14
Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS One (2009) 1.13
Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Res (2011) 1.12
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics. Genome Biol (2006) 1.08
Genome histories clarify evolution of the expansin superfamily: new insights from the poplar genome and pine ESTs. J Plant Res (2006) 1.02
Genome-wide analysis of LIM gene family in Populus trichocarpa, Arabidopsis thaliana, and Oryza sativa. DNA Res (2007) 1.01
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales. Ann Bot (2010) 1.01
Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana. Genome Biol Evol (2011) 1.00
Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum. Plant Cell (2015) 1.00
Widespread triploidy in Western North American aspen (Populus tremuloides). PLoS One (2012) 0.98
Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.). Theor Appl Genet (2012) 0.96
Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication. Plant Physiol (2011) 0.95
Evolution and diversity of invertase genes in Populus trichocarpa. Planta (2007) 0.94
Analyses of the oligopeptide transporter gene family in poplar and grape. BMC Genomics (2011) 0.94
The multiple gene duplication problem revisited. Bioinformatics (2008) 0.94
Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats. Plant Physiol (2010) 0.88
Evolution of fruit development genes in flowering plants. Front Plant Sci (2014) 0.88
Pleistocene speciation in the genus Populus (salicaceae). Syst Biol (2012) 0.87
Transcriptome analysis of response to drought in poplar interspecific hybrids. Genom Data (2015) 0.87
Genome-wide comparative analysis of annexin superfamily in plants. PLoS One (2012) 0.85
Development and application of microsatellites in candidate genes related to wood properties in the Chinese white poplar (Populus tomentosa Carr.). DNA Res (2012) 0.85
Evidence of genome duplication revealed by sequence analysis of multi-loci expressed sequence tag-simple sequence repeat bands in Panax ginseng Meyer. J Ginseng Res (2014) 0.84
Selection for higher gene copy number after different types of plant gene duplications. Genome Biol Evol (2011) 0.82
Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution. BMC Evol Biol (2014) 0.81
Evolution of Catkins: Inflorescence Morphology of Selected Salicaceae in an Evolutionary and Developmental Context. Front Plant Sci (2015) 0.81
Glutamine, arginine and the amino acid transporter Pt-CAT11 play important roles during senescence in poplar. Ann Bot (2010) 0.80
Sequence and gene expression evolution of paralogous genes in willows. Sci Rep (2015) 0.79
Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape. BMC Plant Biol (2010) 0.79
Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Mol Cells (2010) 0.78
Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom. BMC Plant Biol (2013) 0.77
Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs. PLoS One (2015) 0.76
Genome-wide identification and characterization of RBR ubiquitin ligase genes in soybean. PLoS One (2014) 0.76
Structure and vascular tissue expression of duplicated TERMINAL EAR1-like paralogues in poplar. Planta (2009) 0.75
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet (2010) 8.07
The European database on small subunit ribosomal RNA. Nucleic Acids Res (2002) 7.80
Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol (2005) 7.19
A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics (2005) 7.13
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res (2002) 6.43
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2002) 5.00
Modeling gene and genome duplications in eukaryotes. Proc Natl Acad Sci U S A (2005) 5.00
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics (2004) 4.95
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science (2007) 4.89
The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci U S A (2006) 4.52
CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science (2006) 4.26
Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res (2003) 4.19
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J Comput Biol (2002) 4.05
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A (2004) 3.97
Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell (2002) 3.91
From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays (2005) 3.91
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (2010) 3.60
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58
Genome duplication and the origin of angiosperms. Trends Ecol Evol (2005) 3.46
The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature (2011) 3.29
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci U S A (2009) 3.13
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci U S A (2004) 3.13
Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res (2002) 3.12
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res (2004) 3.02
Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol (2003) 2.90
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A (2011) 2.84
Rapid regulation of light harvesting and plant fitness in the field. Science (2002) 2.74
Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol (2009) 2.67
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods. Bioinformatics (2009) 2.66
Evidence that rice and other cereals are ancient aneuploids. Plant Cell (2003) 2.62
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol (2006) 2.58
LAMINA: a tool for rapid quantification of leaf size and shape parameters. BMC Plant Biol (2008) 2.44
PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Plant Cell (2009) 2.43
CATMA: a complete Arabidopsis GST database. Nucleic Acids Res (2003) 2.34
Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature (2013) 2.26
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. BMC Evol Biol (2007) 2.17
INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling. Bioinformatics (2002) 2.13
A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell (2007) 2.08
The Mycobacterium tuberculosis regulatory network and hypoxia. Nature (2013) 2.04
A Populus EST resource for plant functional genomics. Proc Natl Acad Sci U S A (2004) 2.04
Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiol (2011) 1.98
Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends Microbiol (2004) 1.94
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Mol Syst Biol (2010) 1.91
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. Bioinformatics (2008) 1.91
GenomeView: a next-generation genome browser. Nucleic Acids Res (2011) 1.91
Gene expression in autumn leaves. Plant Physiol (2003) 1.91
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol (2009) 1.90
Towards a prokaryotic genomic taxonomy. FEMS Microbiol Rev (2005) 1.87
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol (2006) 1.85
Genome-wide identification of potential plant E2F target genes. Plant Physiol (2005) 1.85
Generic eukaryotic core promoter prediction using structural features of DNA. Genome Res (2007) 1.80
Absence of the Lhcb1 and Lhcb2 proteins of the light-harvesting complex of photosystem II - effects on photosynthesis, grana stacking and fitness. Plant J (2003) 1.76
The genetics and genomics of the drought response in Populus. Plant J (2006) 1.72
A transgenic mouse marking live replicating cells reveals in vivo transcriptional program of proliferation. Dev Cell (2012) 1.72
Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana. Plant J (2004) 1.71
A transcriptional timetable of autumn senescence. Genome Biol (2004) 1.70
i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles. Bioinformatics (2007) 1.68
Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast. Nat Cell Biol (2005) 1.66
A cellular timetable of autumn senescence. Plant Physiol (2005) 1.66
Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes. Ecol Lett (2013) 1.66
Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen. Plant Physiol (2005) 1.62
Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 Locus in European aspen (Populus tremula, Salicaceae). Genetics (2008) 1.61
PROTON GRADIENT REGULATION5 is essential for proper acclimation of Arabidopsis photosystem I to naturally and artificially fluctuating light conditions. Plant Cell (2012) 1.56
Lack of the light-harvesting complex CP24 affects the structure and function of the grana membranes of higher plant chloroplasts. Plant Cell (2006) 1.54
Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations. Nucleic Acids Res (2003) 1.54
CLE peptides control Medicago truncatula nodulation locally and systemically. Plant Physiol (2010) 1.52