Published in Proc Natl Acad Sci U S A on July 22, 2004
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Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell (2006) 4.06
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development. Plant Cell (2005) 3.88
Antiquity of microRNAs and their targets in land plants. Plant Cell (2005) 3.88
Cloning and characterization of microRNAs from rice. Plant Cell (2005) 3.72
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Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol (2008) 3.43
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Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell (2005) 3.18
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell (2008) 3.14
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Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol (2007) 3.02
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A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci U S A (2005) 2.47
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miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.73
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Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Res (2008) 1.51
The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages. PLoS One (2008) 1.48
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MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans. BMC Bioinformatics (2007) 1.42
Discovery of barley miRNAs through deep sequencing of short reads. BMC Genomics (2011) 1.40
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol (2007) 1.38
Sequence variation of MicroRNAs and their binding sites in Arabidopsis. Plant Physiol (2008) 1.35
Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs. Plant Cell Physiol (2008) 1.35
Submergence-responsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann Bot (2008) 1.33
Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Funct Integr Genomics (2010) 1.32
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. BMC Genomics (2010) 1.29
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Res (2011) 1.27
The Arabidopsis AtRaptor genes are essential for post-embryonic plant growth. BMC Biol (2005) 1.24
High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot. BMC Genomics (2012) 1.24
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Arabidopsis ribosomal proteins RPL23aA and RPL23aB are differentially targeted to the nucleolus and are disparately required for normal development. Plant Physiol (2008) 1.21
MicroRNA prediction with a novel ranking algorithm based on random walks. Bioinformatics (2008) 1.20
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Identification and characterization of 27 conserved microRNAs in citrus. Planta (2009) 1.17
Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. PLoS Comput Biol (2007) 1.16
Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PLoS One (2010) 1.15
Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta (2009) 1.15
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation. Genome Res (2007) 1.14
Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol (2007) 1.12
First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One (2011) 1.09
Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development. J Virol (2005) 1.07
Plant miRNAs: biogenesis, organization and origins. Funct Integr Genomics (2015) 1.07
Roles of microRNA in plant defense and virus offense interaction. Plant Cell Rep (2008) 1.05
Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics (2012) 1.04
Comparative analysis reveals dynamic changes in miRNAs and their targets and expression during somatic embryogenesis in longan (Dimocarpus longan Lour.). PLoS One (2013) 1.04
A combined approach of high-throughput sequencing and degradome analysis reveals tissue specific expression of microRNAs and their targets in cucumber. PLoS One (2012) 1.03
Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.). Plant Cell Rep (2010) 1.02
Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application. Mol Genet Genomics (2010) 0.99
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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome. BMC Genomics (2007) 0.98
Computational Identification of Novel MicroRNAs and Their Targets in Vigna unguiculata. Comp Funct Genomics (2010) 0.97
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Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses. Mol Genet Genomics (2009) 0.96
Identification of novel maize miRNAs by measuring the precision of precursor processing. BMC Plant Biol (2011) 0.96
Regulation of copper homeostasis and biotic interactions by microRNA 398b in common bean. PLoS One (2014) 0.95
Profiling microRNA expression in Arabidopsis pollen using microRNA array and real-time PCR. BMC Plant Biol (2009) 0.94
MicroRNAs as regulators in plant metal toxicity response. Front Plant Sci (2012) 0.94
Computational prediction of the localization of microRNAs within their pre-miRNA. Nucleic Acids Res (2013) 0.94
Using a kernel density estimation based classifier to predict species-specific microRNA precursors. BMC Bioinformatics (2008) 0.94
Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping. BMC Plant Biol (2011) 0.94
Review of current methodological approaches for characterizing microRNAs in plants. Int J Plant Genomics (2009) 0.93
Identification of microRNA precursors with support vector machine and string kernel. Genomics Proteomics Bioinformatics (2008) 0.93
Computational prediction of rice (Oryza sativa) miRNA targets. Genomics Proteomics Bioinformatics (2007) 0.92
Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W). Plant Physiol (2005) 0.91
A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction. BMC Genomics (2014) 0.91
Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. Genome Biol Evol (2013) 0.89
A non-canonical plant microRNA target site. Nucleic Acids Res (2014) 0.89
Influence of toxicologically relevant metals on human epigenetic regulation. Toxicol Res (2015) 0.89
Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics (2012) 0.88
Identification of miRNAs involved in pear fruit development and quality. BMC Genomics (2014) 0.88
MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs. BMC Genomics (2009) 0.88
Identification of potential microRNAs and their targets in Brassica rapa L. Mol Cells (2011) 0.88
Known and novel post-transcriptional regulatory sequences are conserved across plant families. RNA (2012) 0.87
Identification of microRNAs in Caragana intermedia by high-throughput sequencing and expression analysis of 12 microRNAs and their targets under salt stress. Plant Cell Rep (2013) 0.87
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Unbiased plasma proteomics for novel diagnostic biomarkers in cardiovascular disease: identification of quiescin Q6 as a candidate biomarker of acutely decompensated heart failure. Eur Heart J (2012) 1.48
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Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics (2013) 1.38
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Investigating ancient duplication events in the Arabidopsis genome. J Struct Funct Genomics (2003) 1.38
Canalization without flux sensors: a traveling-wave hypothesis. Trends Plant Sci (2007) 1.36
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How many genes are there in plants (... and why are they there)? Curr Opin Plant Biol (2007) 1.35
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. Proc Natl Acad Sci U S A (2013) 1.35
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. BMC Genomics (2009) 1.34
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics (2010) 1.34
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell (2013) 1.34
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AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol (2009) 1.33
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