Published in BMC Bioinformatics on December 01, 2005
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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res (2002) 15.70
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MINT: a Molecular INTeraction database. FEBS Lett (2002) 17.21
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IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
MINT: the Molecular INTeraction database. Nucleic Acids Res (2006) 11.90
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
MINT, the molecular interaction database: 2009 update. Nucleic Acids Res (2009) 7.19
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science (2001) 7.08
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res (2003) 6.86
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MINT, the molecular interaction database: 2012 update. Nucleic Acids Res (2011) 5.25
PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods (2011) 5.01
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res (2013) 4.39
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Linking entries in protein interaction database to structured text: the FEBS Letters experiment. FEBS Lett (2008) 3.35
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods (2012) 3.17
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics (2011) 3.03
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Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition. Proteomics (2007) 2.74
iHOP web services. Nucleic Acids Res (2007) 2.65
The ubiquitin-protein ligase Itch regulates p73 stability. EMBO J (2005) 2.38
VirusMINT: a viral protein interaction database. Nucleic Acids Res (2008) 2.30
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Protein interaction networks by proteome peptide scanning. PLoS Biol (2004) 1.92
Protein interactions: integration leads to belief. Trends Biochem Sci (2008) 1.88
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol (2009) 1.78
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data. Genome Biol (2008) 1.76
Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis. J Biol Chem (2001) 1.69
Tumor suppressor density-enhanced phosphatase-1 (DEP-1) inhibits the RAS pathway by direct dephosphorylation of ERK1/2 kinases. J Biol Chem (2009) 1.66
DOMINO: a database of domain-peptide interactions. Nucleic Acids Res (2006) 1.63
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WI-PHI: a weighted yeast interactome enriched for direct physical interactions. Proteomics (2007) 1.55
Liver Match, a prospective observational cohort study on liver transplantation in Italy: study design and current practice of donor-recipient matching. Dig Liver Dis (2010) 1.54
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Recurated protein interaction datasets. Nat Methods (2009) 1.43
Conjugation to Nedd8 instigates ubiquitylation and down-regulation of activated receptor tyrosine kinases. J Biol Chem (2006) 1.42
Temporal patterns of genes in scientific publications. Proc Natl Acad Sci U S A (2007) 1.39
The E3 ligase Aip4/Itch ubiquitinates and targets ErbB-4 for degradation. FASEB J (2007) 1.19
HuPho: the human phosphatase portal. FEBS J (2012) 1.14
Perception of sleep in recovering alcohol-dependent patients with insomnia: relationship with future drinking. Alcohol Clin Exp Res (2006) 1.14
The SH2 domain interaction landscape. Cell Rep (2013) 1.13
Rest-activity cycles in childhood and adolescent depression. J Am Acad Child Adolesc Psychiatry (2004) 1.13
Selectivity and promiscuity in the interaction network mediated by protein recognition modules. FEBS Lett (2004) 1.12
Early developmental changes in sleep in infants: the impact of maternal depression. Sleep (2009) 1.10
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. BMC Bioinformatics (2011) 1.09
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database (Oxford) (2010) 1.08
Identification of new substrates of the protein-tyrosine phosphatase PTP1B by Bayesian integration of proteome evidence. J Biol Chem (2010) 1.07
In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules. J Biol Chem (2002) 1.05
The protein interaction network mediated by human SH3 domains. Biotechnol Adv (2011) 1.05
Probing protein-tyrosine phosphatase substrate specificity using a phosphotyrosine-containing phage library. J Biol Chem (2003) 1.05
Diverse driving forces underlie the invariant occurrence of the T42A, E139D, I282V and T468M SHP2 amino acid substitutions causing Noonan and LEOPARD syndromes. Hum Mol Genet (2008) 1.04
The human phosphatase interactome: An intricate family portrait. FEBS Lett (2012) 1.04
Exploring the diversity of SPRY/B30.2-mediated interactions. Trends Biochem Sci (2012) 1.01
Large-scale assessment of the effect of popularity on the reliability of research. PLoS One (2009) 1.01
Comparative interactomics: comparing apples and pears? Trends Biotechnol (2007) 1.00
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High frequency EEG activity during sleep: characteristics in schizophrenia and depression. Clin EEG Neurosci (2005) 0.99
Reply to: Cisplatin-induced primordial follicle oocyte killing and loss of fertility are not prevented by imatinib. Nat Med (2012) 0.97
Structural and functional protein network analyses predict novel signaling functions for rhodopsin. Mol Syst Biol (2011) 0.95
Acute hepatitis induced by an Aloe vera preparation: a case report. World J Gastroenterol (2005) 0.95
The neurobiology of depression: perspectives from animal and human sleep studies. Neuroscientist (2003) 0.95
Sleep homeostasis in alcohol-dependent, depressed and healthy control men. Eur Arch Psychiatry Clin Neurosci (2011) 0.95
Sleep microarchitecture in childhood and adolescent depression: temporal coherence. Clin EEG Neurosci (2006) 0.94
Reduced sleep spindle activity in early-onset and elevated risk for depression. J Am Acad Child Adolesc Psychiatry (2010) 0.93
Degradation of p63 by Itch. Cell Cycle (2006) 0.92
The FEBS Letters SDA corpus: a collection of protein interaction articles with high quality annotations for the BioCreative II.5 online challenge and the text mining community. FEBS Lett (2010) 0.92
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Effects of a 3-hour sleep delay on sleep homeostasis in alcohol dependent adults. Sleep (2012) 0.90
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SMITH: a LIMS for handling next-generation sequencing workflows. BMC Bioinformatics (2014) 0.88
Molecular recognition in helix-loop-helix and helix-loop-helix-leucine zipper domains. Design of repertoires and selection of high affinity ligands for natural proteins. J Biol Chem (2003) 0.88
The impact of a 4-hour sleep delay on slow wave activity in twins discordant for chronic fatigue syndrome. Sleep (2007) 0.88
The 4G10, pY20 and p-TYR-100 antibody specificity: profiling by peptide microarrays. N Biotechnol (2011) 0.87
Hepatitis C virus eradication associated with hepatitis B virus superinfection and development of a hepatitis B virus specific T cell response. J Hepatol (2002) 0.87
Binding to DPF-motif by the POB1 EH domain is responsible for POB1-Eps15 interaction. BMC Biochem (2007) 0.87
Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens. Proteomics (2010) 0.87
A second-generation protein-protein interaction network of Helicobacter pylori. Mol Cell Proteomics (2014) 0.86
Mapping the human phosphatome on growth pathways. Mol Syst Biol (2012) 0.85
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Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections. BMC Bioinformatics (2010) 0.85
The central proline rich region of POB1/REPS2 plays a regulatory role in epidermal growth factor receptor endocytosis by binding to 14-3-3 and SH3 domain-containing proteins. BMC Biochem (2008) 0.83