Published in BMC Bioinformatics on January 06, 2006
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci U S A (2006) 3.23
Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS One (2013) 2.40
High-resolution haplotype block structure in the cattle genome. BMC Genet (2009) 2.35
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC Bioinformatics (2006) 2.03
Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics (2007) 1.71
SNP-PHAGE--High throughput SNP discovery pipeline. BMC Bioinformatics (2006) 0.99
PineSAP--sequence alignment and SNP identification pipeline. Bioinformatics (2009) 0.97
Mining of haplotype-based expressed sequence tag single nucleotide polymorphisms in citrus. BMC Genomics (2013) 0.77
Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. BMC Genomics (2014) 0.75
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Data mining in bioinformatics using Weka. Bioinformatics (2004) 6.06
A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression. Bioinformatics (2004) 3.90
Mining EST databases to resolve evolutionary events in major crop species. Genome (2004) 3.82
Single-nucleotide polymorphisms in soybean. Genetics (2003) 3.73
Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP. Bioinformatics (2003) 3.11
Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome. Genome Res (2002) 2.49
Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol (2003) 2.05
Predicting co-complexed protein pairs using genomic and proteomic data integration. BMC Bioinformatics (2004) 2.00
Support vector machine classification on the web. Bioinformatics (2004) 1.65
Prediction of RNA-binding proteins from primary sequence by a support vector machine approach. RNA (2004) 1.36
Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinformatics (2004) 0.96
Prediction of beta-turns with learning machines. Peptides (2003) 0.90
A probabilistic information retrieval approach to medical annotation in SWISS-PROT. Stud Health Technol Inform (2003) 0.82
Genome sequence of the palaeopolyploid soybean. Nature (2010) 17.82
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol (2009) 5.93
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol (2010) 5.39
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics (2007) 3.54
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics (2010) 3.40
Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci U S A (2006) 3.23
Precision genome engineering with programmable DNA-nicking enzymes. Genome Res (2012) 3.05
Simulating school closure strategies to mitigate an influenza epidemic. J Public Health Manag Pract (2010) 2.59
High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet (2008) 2.59
Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS One (2013) 2.40
High-resolution haplotype block structure in the cattle genome. BMC Genet (2009) 2.35
A computer simulation of employee vaccination to mitigate an influenza epidemic. Am J Prev Med (2009) 2.20
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci U S A (2010) 2.15
A computer simulation of vaccine prioritization, allocation, and rationing during the 2009 H1N1 influenza pandemic. Vaccine (2010) 2.13
Policies to reduce influenza in the workplace: impact assessments using an agent-based model. Am J Public Health (2013) 2.06
High-throughput SNP discovery and assay development in common bean. BMC Genomics (2010) 1.79
A genome-wide association study of seed protein and oil content in soybean. BMC Genomics (2014) 1.73
Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics (2007) 1.71
Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res (2012) 1.62
Complete genome sequence of Mycobacterium intracellulare strain ATCC 13950(T). J Bacteriol (2012) 1.62
Design of a bovine low-density SNP array optimized for imputation. PLoS One (2012) 1.59
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol Genomics (2006) 1.58
Vaccination deep into a pandemic wave potential mechanisms for a "third wave" and the impact of vaccination. Am J Prev Med (2010) 1.57
Would school closure for the 2009 H1N1 influenza epidemic have been worth the cost?: a computational simulation of Pennsylvania. BMC Public Health (2011) 1.56
A physical map of the bovine genome. Genome Biol (2007) 1.56
Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. BMC Genomics (2011) 1.52
Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol (2012) 1.48
Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-02. J Bacteriol (2012) 1.43
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol (2010) 1.42
Sequence and structure of Brassica rapa chromosome A3. Genome Biol (2010) 1.35
Fine-mapping milk production quantitative trait loci on BTA6: analysis of the bovine osteopontin gene. Proc Natl Acad Sci U S A (2005) 1.29
The benefits to all of ensuring equal and timely access to influenza vaccines in poor communities. Health Aff (Millwood) (2011) 1.28
Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean. BMC Genomics (2014) 1.26
Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-64, belonging to the INT1 genotype. J Bacteriol (2012) 1.22
Fungal and plant gene expression during the colonization of cacao seedlings by endophytic isolates of four Trichoderma species. Planta (2006) 1.17
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics (2011) 1.13
Prevalence of the prion protein gene E211K variant in U.S. cattle. BMC Vet Res (2008) 1.12
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. BMC Genet (2013) 1.11
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics (2013) 1.11
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell (2010) 1.09
EST-PAGE--managing and analyzing EST data. Bioinformatics (2004) 1.09
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. PLoS One (2013) 1.08
Unlocking the bovine genome. BMC Genomics (2009) 1.06
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. Genome Biol (2010) 1.06
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics (2012) 1.04
Effect of sample stratification on dairy GWAS results. BMC Genomics (2012) 1.02
Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes. DNA Res (2013) 1.02
An integrative approach to genomic introgression mapping. Plant Physiol (2010) 1.01
A game dynamic model for vaccine skeptics and vaccine believers: measles as an example. J Theor Biol (2011) 1.01
Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538. Theor Appl Genet (2010) 1.00
Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-36Y, belonging to the INT5 genotype. J Bacteriol (2012) 1.00
SNP-PHAGE--High throughput SNP discovery pipeline. BMC Bioinformatics (2006) 0.99
Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis. Physiol Genomics (2006) 0.99
Fine mapping the soybean aphid resistance gene Rag1 in soybean. Theor Appl Genet (2009) 0.98
Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo). BMC Genomics (2012) 0.95
Genome-wide association study (GWAS) of carbon isotope ratio (δ13C) in diverse soybean [Glycine max (L.) Merr.] genotypes. Theor Appl Genet (2014) 0.94
Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences. BMC Genomics (2006) 0.93
Methods of tagSNP selection and other variables affecting imputation accuracy in swine. BMC Genet (2013) 0.93
Local inflammation as a possible mechanism of resistance to gastrointestinal nematodes in Angus heifers. Vet Parasitol (2006) 0.92
Complete genome sequence of Japanese erwinia strain ejp617, a bacterial shoot blight pathogen of pear. J Bacteriol (2010) 0.92
Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. BMC Genomics (2015) 0.92
Imputation of microsatellite alleles from dense SNP genotypes for parental verification. Front Genet (2012) 0.92
Accuracy of genomic predictions in Bos indicus (Nellore) cattle. Genet Sel Evol (2014) 0.92
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC Genomics (2014) 0.90
Serial analysis of gene expression during elongation of the peri-implantation porcine trophectoderm (conceptus). Physiol Genomics (2004) 0.90
QTL mapping of partial resistance in winter wheat to Stagonospora nodorum blotch. Genome (2003) 0.90
Toward an integrated meta-model of public health dynamics for preparedness decision support. J Public Health Manag Pract (2013) 0.89
Complete genome sequence of Burkholderia gladioli BSR3. J Bacteriol (2011) 0.89
Genome sequence of Pectobacterium carotovorum subsp. carotovorum strain PCC21, a pathogen causing soft rot in Chinese cabbage. J Bacteriol (2012) 0.88
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle. Genet Sel Evol (2014) 0.87
Identification of conserved regulatory elements in mammalian promoter regions: a case study using the PCK1 promoter. Genomics Proteomics Bioinformatics (2008) 0.86
Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth. Funct Integr Genomics (2009) 0.86
A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics (2014) 0.86
Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Mamm Genome (2002) 0.84
Effects of increased milking frequency on gene expression in the bovine mammary gland. BMC Genomics (2008) 0.83
Identification of a second Asian soybean rust resistance gene in Hyuuga soybean. Phytopathology (2011) 0.83
Mutational analysis of the major soybean UreF paralogue involved in urease activation. J Exp Bot (2011) 0.83
Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean. Mol Genet Genomics (2014) 0.82
Prevention of Hepatitis C by Screening and Treatment in U.S. Prisons. Ann Intern Med (2015) 0.82
HspA and HtpG enhance thermotolerance in the cyanobacterium, Microcystis aeruginosa NIES-298. J Microbiol Biotechnol (2012) 0.82
Comparative transcriptome analysis of in vivo- and in vitro-produced porcine blastocysts by small amplified RNA-serial analysis of gene expression (SAR-SAGE). Mol Reprod Dev (2008) 0.82
Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virus resistance in common bean. BMC Genomics (2014) 0.82