Published in PLoS Biol on September 07, 2010
Ensembl 2011. Nucleic Acids Res (2010) 14.68
Ensembl 2012. Nucleic Acids Res (2011) 14.55
GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res (2012) 11.33
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics (2011) 7.44
The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res (2011) 6.88
Next-generation transcriptome assembly. Nat Rev Genet (2011) 5.89
Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (2014) 5.88
The oyster genome reveals stress adaptation and complexity of shell formation. Nature (2012) 5.30
Next generation sequence assembly with AMOS. Curr Protoc Bioinformatics (2011) 3.60
The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature (2011) 3.32
Comparative genomics reveals insights into avian genome evolution and adaptation. Science (2014) 3.01
Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc Natl Acad Sci U S A (2011) 2.67
Sequencing technologies and genome sequencing. J Appl Genet (2011) 2.52
The development and characterization of a 60K SNP chip for chicken. BMC Genomics (2011) 2.19
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet (2013) 2.10
GenomeView: a next-generation genome browser. Nucleic Acids Res (2011) 1.91
Origins and functional evolution of Y chromosomes across mammals. Nature (2014) 1.89
GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinformatics (2013) 1.72
Current challenges in de novo plant genome sequencing and assembly. Genome Biol (2012) 1.69
Genomic diversity and evolution of the head crest in the rock pigeon. Science (2013) 1.68
Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat Genet (2013) 1.45
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biol (2012) 1.33
The Ensembl gene annotation system. Database (Oxford) (2016) 1.31
Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. PLoS Genet (2012) 1.29
Conserved syntenic clusters of protein coding genes are missing in birds. Genome Biol (2014) 1.29
Next-generation sequencing and large genome assemblies. Pharmacogenomics (2012) 1.27
Recombination drives vertebrate genome contraction. PLoS Genet (2012) 1.20
Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator. Cell Res (2013) 1.18
Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences. BMC Genomics (2011) 1.18
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Mol Ecol (2014) 1.11
Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates. Genome Biol Evol (2015) 1.11
Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes. Genome Res (2011) 1.10
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. BMC Genomics (2013) 1.09
Molecular cytogenetic map of the central bearded dragon, Pogona vitticeps (Squamata: Agamidae). Chromosome Res (2013) 1.09
RNA sequencing: platform selection, experimental design, and data interpretation. Nucleic Acid Ther (2012) 1.07
Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints. Heredity (Edinb) (2011) 1.07
Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude. Genome Biol (2013) 1.06
The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels evolutionary adaptation mechanisms in plants. PLoS One (2011) 1.06
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience (2014) 1.00
Masculinization of gene expression is associated with exaggeration of male sexual dimorphism. PLoS Genet (2013) 1.00
Rampant horizontal transfer of SPIN transposons in squamate reptiles. Mol Biol Evol (2011) 0.99
Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype. Mol Biol Evol (2013) 0.97
Emergence of male-biased genes on the chicken Z-chromosome: sex-chromosome contrasts between male and female heterogametic systems. Genome Res (2011) 0.96
Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo). BMC Genomics (2012) 0.95
Unexpected diversity and expression of avian endogenous retroviruses. MBio (2012) 0.95
A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes. BMC Genomics (2010) 0.94
Ensembl comparative genomics resources. Database (Oxford) (2016) 0.94
Expression profiling without genome sequence information in a non-model species, Pandalid shrimp (Pandalus latirostris), by next-generation sequencing. PLoS One (2011) 0.93
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing. Bioinformatics (2011) 0.92
A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao). PLoS One (2013) 0.92
What can article-level metrics do for you? PLoS Biol (2013) 0.92
Reference genes for quantitative gene expression studies in multiple avian species. PLoS One (2014) 0.92
Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds. Genome Biol (2015) 0.91
A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes. BMC Genomics (2011) 0.89
Oxygen supply from the bird's eye perspective: globin E is a respiratory protein in the chicken retina. J Biol Chem (2011) 0.89
Epithelial sodium channel (ENaC) family: Phylogeny, structure-function, tissue distribution, and associated inherited diseases. Gene (2016) 0.89
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics (2014) 0.88
Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res (2015) 0.88
The avian XPR1 gammaretrovirus receptor is under positive selection and is disabled in bird species in contact with virus-infected wild mice. J Virol (2013) 0.88
Construction of BIBAC and BAC libraries from a variety of organisms for advanced genomics research. Nat Protoc (2012) 0.87
Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history. Genes Cells (2012) 0.87
A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene. PLoS One (2014) 0.87
Emergence and evolution of the glycoprotein hormone and neurotrophin gene families in vertebrates. BMC Evol Biol (2011) 0.87
Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution. BMC Genomics (2014) 0.86
DNA ligase III: a spotty presence in eukaryotes, but an essential function where tested. Cell Cycle (2011) 0.86
Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research. Nat Protoc (2012) 0.86
Advances in genomics for flatfish aquaculture. Genes Nutr (2012) 0.86
Variation in promiscuity and sexual selection drives avian rate of Faster-Z evolution. Mol Ecol (2015) 0.85
Systematic analysis and evolution of 5S ribosomal DNA in metazoans. Heredity (Edinb) (2013) 0.85
A guided tour of large genome size in animals: what we know and where we are heading. Chromosome Res (2011) 0.85
The genome sequence of a widespread apex predator, the golden eagle (Aquila chrysaetos). PLoS One (2014) 0.84
Defining the turkey MHC: identification of expressed class I- and class IIB-like genes independent of the MHC-B. Immunogenetics (2011) 0.83
Low frequency of paleoviral infiltration across the avian phylogeny. Genome Biol (2014) 0.83
Deep sequencing-based transcriptome analysis of chicken spleen in response to avian pathogenic Escherichia coli (APEC) infection. PLoS One (2012) 0.83
Efficient high-throughput sequencing of a laser microdissected chromosome arm. BMC Genomics (2013) 0.83
A second TCRδ locus in Galliformes uses antibody-like V domains: insight into the evolution of TCRδ and TCRμ genes in tetrapods. J Immunol (2012) 0.83
Independent stratum formation on the avian sex chromosomes reveals inter-chromosomal gene conversion and predominance of purifying selection on the W chromosome. Evolution (2014) 0.83
Genome physical mapping of polyploids: a BIBAC physical map of cultivated tetraploid cotton, Gossypium hirsutum L. PLoS One (2012) 0.83
Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish. Nucleic Acids Res (2013) 0.83
Next-generation sequencing in clinical virology: Discovery of new viruses. World J Virol (2015) 0.82
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics (2017) 0.82
Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds. G3 (Bethesda) (2015) 0.82
Conservation and losses of non-coding RNAs in avian genomes. PLoS One (2015) 0.82
Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary. BMC Genomics (2014) 0.82
Rapid in vivo testing of drug response in multiple myeloma made possible by xenograft to turkey embryos. Br J Cancer (2011) 0.82
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PLoS One (2013) 0.82
Cloning, Sequencing, and Expression of Selenoprotein Transcripts in the Turkey (Meleagris gallopavo). PLoS One (2015) 0.82
Gene turnover in the avian globin gene families and evolutionary changes in hemoglobin isoform expression. Mol Biol Evol (2014) 0.81
Comparative genomic analysis of the proteasome β5t subunit gene: implications for the origin and evolution of thymoproteasomes. Immunogenetics (2011) 0.81
Gallus gallus NEU3 sialidase as model to study protein evolution mechanism based on rapid evolving loops. BMC Biochem (2011) 0.81
Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome. Open Biol (2013) 0.81
The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell. Proteome Sci (2013) 0.81
Genomic resources for the endangered Hawaiian honeycreepers. BMC Genomics (2014) 0.80
All chromosomes great and small: 10 years on. Chromosome Res (2014) 0.80
Spliceosomal intron insertions in genome compacted ray-finned fishes as evident from phylogeny of MC receptors, also supported by a few other GPCRs. PLoS One (2011) 0.80
Looking for the bird Kiss: evolutionary scenario in sauropsids. BMC Evol Biol (2014) 0.79
Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics (2012) 0.79
A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics (2012) 0.79
Birds Generally Carry a Small Repertoire of Bitter Taste Receptor Genes. Genome Biol Evol (2015) 0.79
An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination. BMC Genomics (2012) 0.79
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
Genome sequencing in microfabricated high-density picolitre reactors. Nature (2005) 150.21
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
The Bioperl toolkit: Perl modules for the life sciences. Genome Res (2002) 58.63
PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 45.68
The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80
A whole-genome assembly of Drosophila. Science (2000) 38.48
Human-mouse alignments with BLASTZ. Genome Res (2003) 35.49
Whole-genome sequencing and variant discovery in C. elegans. Nat Methods (2008) 31.92
Identifying biological themes within lists of genes with EASE. Genome Biol (2003) 31.72
Paired-end mapping reveals extensive structural variation in the human genome. Science (2007) 30.46
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res (2008) 26.36
Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res (2005) 25.49
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol (2007) 23.64
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature (2004) 21.40
Distribution and intensity of constraint in mammalian genomic sequence. Genome Res (2005) 18.85
Fast and effective prediction of microRNA/target duplexes. RNA (2004) 18.10
Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci U S A (2003) 16.58
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics (2007) 12.76
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res (2008) 12.72
The Ensembl automatic gene annotation system. Genome Res (2004) 12.24
Aggressive assembly of pyrosequencing reads with mates. Bioinformatics (2008) 11.01
Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biol (2009) 9.59
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol (1999) 9.18
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 8.36
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
De novo identification of repeat families in large genomes. Bioinformatics (2005) 7.95
Integrating genomic homology into gene structure prediction. Bioinformatics (2001) 7.92
Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. Genome Res (2008) 7.35
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. J Hered (2009) 7.18
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res (2008) 6.91
Two novel classes of small ribonucleoproteins detected by antibodies associated with lupus erythematosus. Science (1981) 6.34
phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics (2009) 6.02
The origin and evolution of model organisms. Nat Rev Genet (2002) 5.98
The genome of a songbird. Nature (2010) 5.90
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics (2004) 5.85
A human snoRNA with microRNA-like functions. Mol Cell (2008) 5.84
Primate segmental duplications: crucibles of evolution, diversity and disease. Nat Rev Genet (2006) 5.25
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Genome assembly forensics: finding the elusive mis-assembly. Genome Biol (2008) 4.91
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res (2006) 4.80
Patterns of positive selection in six Mammalian genomes. PLoS Genet (2008) 4.69
The evolution of vertebrate Toll-like receptors. Proc Natl Acad Sci U S A (2005) 4.42
Genome sequence, comparative analysis, and population genetics of the domestic horse. Science (2009) 4.41
LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics (2003) 4.04
A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet (2003) 3.57
The dynamics of chromosome evolution in birds and mammals. Nature (1999) 2.95
The chicken B locus is a minimal essential major histocompatibility complex. Nature (1999) 2.84
Somatic hyperconversion diversifies the single Vh gene of the chicken with a high incidence in the D region. Cell (1989) 2.77
JIGSAW: integration of multiple sources of evidence for gene prediction. Bioinformatics (2005) 2.37
Modeling sequencing errors by combining Hidden Markov models. Bioinformatics (2003) 2.34
RALEE--RNA ALignment editor in Emacs. Bioinformatics (2004) 1.87
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res (2007) 1.79
Molecular mimicry and the generation of host defense protein diversity. Cell (1993) 1.78
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res (2004) 1.73
The repetitive landscape of the chicken genome. Genome Res (2004) 1.72
Consensus generation and variant detection by Celera Assembler. Bioinformatics (2008) 1.68
Balancing selection is the main force shaping the evolution of innate immunity genes. J Immunol (2008) 1.63
Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. BMC Genomics (2008) 1.59
Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol Phylogenet Evol (2004) 1.57
Lymphoid neo-organogenesis: lymphotoxin's role in inflammation and development. Immunol Res (1999) 1.57
A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish. BMC Evol Biol (2008) 1.54
The effect of linkage on limits to artificial selection. Genet Res (2007) 1.53
Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Res (2007) 1.49
Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss. BMC Genomics (2008) 1.41
Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions. Genome Res (2007) 1.36
Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey. BMC Genomics (2009) 1.31
Molecular evolutionary genomics of birds. Cytogenet Genome Res (2007) 1.29
Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes. Mol Phylogenet Evol (2002) 1.26
A genomic analysis of chicken cytokines and chemokines. J Interferon Cytokine Res (2005) 1.22
OPTIC: orthologous and paralogous transcripts in clades. Nucleic Acids Res (2007) 1.20
Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature. Proc Natl Acad Sci U S A (2009) 1.20
Karyotypic evolution in the Galliformes: an examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny. Cytogenet Genome Res (2004) 1.18
Recovering genome rearrangements in the mammalian phylogeny. Genome Res (2009) 1.14
An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes. Genome Res (2007) 1.11
50 million years of chordate evolution: seeking the origins of adaptive immunity. Proc Natl Acad Sci U S A (2000) 1.10
Defining the turkey MHC: sequence and genes of the B locus. J Immunol (2009) 1.05
Early diversification of the TNF superfamily in teleosts: genomic characterization and expression analysis. J Immunol (2007) 1.03
Evolution of the vertebrate Y RNA cluster. Theory Biosci (2007) 1.02
An approach of orthology detection from homologous sequences under minimum evolution. Nucleic Acids Res (2008) 1.00
Phospholipid hydroperoxide glutathione peroxidase (Gpx4) is highly regulated in male turkey poults and can be used to determine dietary selenium requirements. Exp Biol Med (Maywood) (2010) 0.97
Gene conversion limits divergence of mammalian TLR1 and TLR6. BMC Evol Biol (2007) 0.96
Francolin phylogenetics: molecular, morphobehavioral, and combined evidence. Mol Phylogenet Evol (1998) 0.96
Identification of 16 chicken microchromosomes by molecular markers using two-colour fluorescence in situ hybridization (FISH). Chromosome Res (1998) 0.95
Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs. BMC Genomics (2009) 0.93
Molecular phylogeny of grouse: individual and combined performance of W-linked, autosomal, and mitochondrial loci. Syst Biol (2002) 0.92
Cross-species overgo hybridization and comparative physical mapping within avian genomes. Anim Genet (2006) 0.89
An integrated and comparative genetic map of the turkey genome. Cytogenet Genome Res (2007) 0.88
Genome-wide genetic diversity of 'Nici', the DNA source for the CHORI-260 turkey BAC library and candidate for whole genome sequencing. Anim Genet (2009) 0.83
Structural organization and chromosomal location of the chicken alpha-amylase gene family. Gene (2005) 0.82
Bioactivities of a tumour necrosis-like factor released by chicken macrophages. Dev Comp Immunol (2000) 0.79
An atlas of the speed of copy number changes in animal gene families and its implications. PLoS One (2009) 0.79
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
Fast gapped-read alignment with Bowtie 2. Nat Methods (2012) 83.79
TopHat: discovering splice junctions with RNA-Seq. Bioinformatics (2009) 81.13
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45
Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics (2007) 47.63
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc (2012) 35.75
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42
Population genomics of human gene expression. Nat Genet (2007) 24.49
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc (2010) 22.66
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol (2008) 21.72
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
International network of cancer genome projects. Nature (2010) 20.35
Melanomas acquire resistance to B-RAF(V600E) inhibition by RTK or N-RAS upregulation. Nature (2010) 18.69
RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (2007) 18.59
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res (2002) 17.31
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics (2010) 15.90
Ensembl 2011. Nucleic Acids Res (2010) 14.68
Ensembl 2012. Nucleic Acids Res (2011) 14.55
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res (2013) 14.23
FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (2011) 13.71
Ensembl 2014. Nucleic Acids Res (2013) 12.62
Quake: quality-aware detection and correction of sequencing errors. Genome Biol (2010) 12.52
Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature (2005) 11.99
Ensembl 2013. Nucleic Acids Res (2012) 11.70
The genome of the African trypanosome Trypanosoma brucei. Science (2005) 11.48
Optimized design and assessment of whole genome tiling arrays. Bioinformatics (2007) 11.38
GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res (2012) 11.33
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res (2003) 11.03
Ensembl's 10th year. Nucleic Acids Res (2009) 10.82
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat Biotechnol (2012) 10.31
Searching for SNPs with cloud computing. Genome Biol (2009) 10.12
Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science (2002) 9.83
De novo gene disruptions in children on the autistic spectrum. Neuron (2012) 9.69
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59
ViennaRNA Package 2.0. Algorithms Mol Biol (2011) 9.43
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (2002) 9.43
Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19
Complete Khoisan and Bantu genomes from southern Africa. Nature (2010) 9.06
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature (2002) 8.92
Transcriptome and genome sequencing uncovers functional variation in humans. Nature (2013) 8.89
Secondary structure prediction for aligned RNA sequences. J Mol Biol (2002) 8.80
A high-resolution map of human evolutionary constraint using 29 mammals. Nature (2011) 8.67
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet (2004) 8.60
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature (2005) 8.55
The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods (2008) 8.26
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
Fast and reliable prediction of noncoding RNAs. Proc Natl Acad Sci U S A (2005) 8.15
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat Methods (2009) 8.15
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91
A standard variation file format for human genome sequences. Genome Biol (2010) 7.83
Cloud computing and the DNA data race. Nat Biotechnol (2010) 7.81
The primary transcriptome of the major human pathogen Helicobacter pylori. Nature (2010) 7.70
Minimus: a fast, lightweight genome assembler. BMC Bioinformatics (2007) 7.65
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64