Published in Genome Res on November 19, 2007
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics (2011) 5.35
SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res (2007) 3.02
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
A beginner's guide to eukaryotic genome annotation. Nat Rev Genet (2012) 2.67
Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry. Nature (2011) 2.65
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol (2010) 2.36
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet (2011) 2.16
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A (2011) 1.94
Using GBrowse 2.0 to visualize and share next-generation sequence data. Brief Bioinform (2013) 1.90
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nat Genet (2015) 1.89
Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A (2011) 1.88
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nat Commun (2014) 1.85
A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages. Development (2010) 1.83
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nat Commun (2012) 1.83
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genet (2013) 1.81
Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade. PLoS Genet (2010) 1.73
In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc Natl Acad Sci U S A (2015) 1.72
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res (2011) 1.70
Web Apollo: a web-based genomic annotation editing platform. Genome Biol (2013) 1.69
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet (2013) 1.68
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proc Natl Acad Sci U S A (2013) 1.68
AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae. PLoS One (2015) 1.65
Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc Natl Acad Sci U S A (2013) 1.63
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol (2013) 1.62
Genome sequence of mungbean and insights into evolution within Vigna species. Nat Commun (2014) 1.62
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proc Natl Acad Sci U S A (2013) 1.59
The genome of Chenopodium quinoa. Nature (2017) 1.58
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Mol Biol (2010) 1.57
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biol (2014) 1.56
nGASP--the nematode genome annotation assessment project. BMC Bioinformatics (2008) 1.52
Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade. Proc Natl Acad Sci U S A (2015) 1.51
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes. Genome Biol (2011) 1.49
Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Nat Genet (2012) 1.49
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiol (2013) 1.48
Approaches to Fungal Genome Annotation. Mycology (2011) 1.47
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biol (2013) 1.46
The Genome of the "Great Speciator" Provides Insights into Bird Diversification. Genome Biol Evol (2015) 1.43
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biol (2017) 1.43
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol (2016) 1.42
The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biol (2011) 1.41
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genomics (2010) 1.40
The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J (2012) 1.40
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. BMC Biol (2017) 1.39
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37
Draft genome sequence of adzuki bean, Vigna angularis. Sci Rep (2015) 1.37
Extensive error in the number of genes inferred from draft genome assemblies. PLoS Comput Biol (2014) 1.36
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics (2012) 1.36
An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics (2014) 1.32
Genomic transition to pathogenicity in chytrid fungi. PLoS Pathog (2011) 1.31
Genome sequence of the model medicinal mushroom Ganoderma lucidum. Nat Commun (2012) 1.30
dlx and sp6-9 Control optic cup regeneration in a prototypic eye. PLoS Genet (2011) 1.29
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. BMC Genomics (2011) 1.26
Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PLoS Genet (2012) 1.25
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol (2014) 1.24
The repertoire of G protein-coupled receptors in the human parasite Schistosoma mansoni and the model organism Schmidtea mediterranea. BMC Genomics (2011) 1.20
Genome of the human hookworm Necator americanus. Nat Genet (2014) 1.18
A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology. PLoS One (2010) 1.16
Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis. MBio (2013) 1.15
The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases. Sci Rep (2015) 1.15
Comparative genomics suggests that the fungal pathogen pneumocystis is an obligate parasite scavenging amino acids from its host's lungs. PLoS One (2010) 1.14
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev (2013) 1.13
Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood. Appl Environ Microbiol (2011) 1.13
Mechanisms and dynamics of orphan gene emergence in insect genomes. Genome Biol Evol (2013) 1.13
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. Nucleic Acids Res (2008) 1.13
Emerging patterns in planarian regeneration. Curr Opin Genet Dev (2009) 1.13
Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes). Brief Bioinform (2011) 1.12
A field guide to whole-genome sequencing, assembly and annotation. Evol Appl (2014) 1.12
Draft Genome Sequence of Colletotrichum acutatum Sensu Lato (Colletotrichum fioriniae). Genome Announc (2014) 1.12
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure. Nat Commun (2014) 1.10
The planarian flatworm: an in vivo model for stem cell biology and nervous system regeneration. Dis Model Mech (2010) 1.09
The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. Genome Biol (2015) 1.09
KPC-4 Is encoded within a truncated Tn4401 in an IncL/M plasmid, pNE1280, isolated from Enterobacter cloacae and Serratia marcescens. Antimicrob Agents Chemother (2012) 1.08
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts. BMC Genomics (2015) 1.08
The pineapple genome and the evolution of CAM photosynthesis. Nat Genet (2015) 1.08
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi. Genome Biol (2014) 1.05
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. PLoS One (2013) 1.05
Genome Annotation and Curation Using MAKER and MAKER-P. Curr Protoc Bioinformatics (2014) 1.05
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Front Plant Sci (2012) 1.04
Discovery of multiple neuropeptide families in the phylum Platyhelminthes. Int J Parasitol (2009) 1.03
Genome Sequence of Penicillium solitum RS1, Which Causes Postharvest Apple Decay. Genome Announc (2016) 1.03
Whole-Genome Sequencing to Identify Mutants and Polymorphisms in Chlamydomonas reinhardtii. G3 (Bethesda) (2012) 1.02
Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proc Natl Acad Sci U S A (2015) 1.01
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. BMC Genomics (2010) 1.01
Genome sequence of the oleaginous red yeast Rhodosporidium toruloides MTCC 457. Eukaryot Cell (2012) 1.00
MonarchBase: the monarch butterfly genome database. Nucleic Acids Res (2012) 1.00
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. BMC Genomics (2015) 0.98
Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes. BMC Genomics (2013) 0.97
Draft Genome Sequence of Penicillium expansum Strain R19, Which Causes Postharvest Decay of Apple Fruit. Genome Announc (2014) 0.97
Coiled-coil proteins facilitated the functional expansion of the centrosome. PLoS Comput Biol (2014) 0.95
The draft genome of the large yellow croaker reveals well-developed innate immunity. Nat Commun (2014) 0.95
How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites. Mol Biol Evol (2015) 0.94
Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl. MBio (2013) 0.93
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PLoS Genet (2013) 0.93
Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array. Mol Ecol Resour (2014) 0.93
The de novo genome assembly and annotation of a female domestic dromedary of North African origin. Mol Ecol Resour (2015) 0.92
Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. BMC Genomics (2015) 0.92
Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. Nucleic Acids Res (2014) 0.91
Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species. Plant Cell (2014) 0.91
Companion: a web server for annotation and analysis of parasite genomes. Nucleic Acids Res (2016) 0.90
Basic local alignment search tool. J Mol Biol (1990) 659.07
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55
The sequence of the human genome. Science (2001) 101.55
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res (2000) 67.44
The Pfam protein families database. Nucleic Acids Res (2004) 56.46
CAP3: A DNA sequence assembly program. Genome Res (1999) 50.04
Comparative genomics of the eukaryotes. Science (2000) 26.62
Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics (2005) 24.54
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics (2007) 12.21
Gene finding in novel genomes. BMC Bioinformatics (2004) 8.64
The Ensembl core software libraries. Genome Res (2004) 7.30
Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics (2001) 7.07
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res (2006) 6.79
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res (2005) 4.13
PILER: identification and classification of genomic repeats. Bioinformatics (2005) 3.99
Rolling-circle transposons in eukaryotes. Proc Natl Acad Sci U S A (2001) 3.81
Double-stranded RNA specifically disrupts gene expression during planarian regeneration. Proc Natl Acad Sci U S A (1999) 3.61
SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res (2007) 3.02
VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Res (2006) 2.94
The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration. Development (2002) 2.71
Large-scale trends in the evolution of gene structures within 11 animal genomes. PLoS Comput Biol (2006) 2.42
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome. Genome Biol (2006) 2.39
Accelerated probabilistic inference of RNA structure evolution. BMC Bioinformatics (2005) 2.16
Eval: a software package for analysis of genome annotations. BMC Bioinformatics (2003) 2.03
Improved repeat identification and masking in Dipterans. Gene (2006) 1.70
A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. Proc Natl Acad Sci U S A (2005) 1.46
Identification of immunological reagents for use in the study of freshwater planarians by means of whole-mount immunofluorescence and confocal microscopy. Genesis (2002) 1.18
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
The Bioperl toolkit: Perl modules for the life sciences. Genome Res (2002) 58.63
The genome sequence of the malaria mosquito Anopheles gambiae. Science (2002) 20.36
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics (2007) 12.21
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (2002) 9.43
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38
A standard variation file format for human genome sequences. Genome Biol (2010) 7.83
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics (2011) 5.35
Draft genome of the filarial nematode parasite Brugia malayi. Science (2007) 5.28
Fundamentals of planarian regeneration. Annu Rev Cell Dev Biol (2004) 4.60
Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria. Dev Cell (2005) 4.35
Assessing the gene space in draft genomes. Nucleic Acids Res (2008) 4.03
SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells. Science (2005) 3.83
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes. Proc Natl Acad Sci U S A (2003) 3.73
R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol Cell (2012) 3.56
Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. Am J Hum Genet (2011) 3.43
A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer. Nat Genet (2011) 3.37
Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis. Science (2007) 3.26
A probabilistic disease-gene finder for personal genomes. Genome Res (2011) 3.23
Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. Genome Res (2003) 3.18
Not your father's planarian: a classic model enters the era of functional genomics. Nat Rev Genet (2002) 3.06
SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res (2007) 3.02
The Celera Discovery System. Nucleic Acids Res (2002) 2.95
Genetic and environmental risk assessment and colorectal cancer screening in an average-risk population: a randomized trial. Ann Intern Med (2014) 2.89
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet (2013) 2.76
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. Nucleic Acids Res (2009) 2.74
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea. Cell Stem Cell (2008) 2.73
A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11. Hum Mol Genet (2012) 2.45
Ingestion of bacterially expressed double-stranded RNA inhibits gene expression in planarians. Proc Natl Acad Sci U S A (2003) 2.44
Formaldehyde-based whole-mount in situ hybridization method for planarians. Dev Dyn (2009) 2.42
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol (2010) 2.36
Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science (2009) 2.25
Slicing across kingdoms: regeneration in plants and animals. Cell (2008) 2.18
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet (2011) 2.16
Cell turnover and adult tissue homeostasis: from humans to planarians. Annu Rev Genet (2007) 2.10
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet (2013) 2.07
The Phoenix definition of biochemical failure predicts for overall survival in patients with prostate cancer. Cancer (2008) 1.98
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A (2011) 1.94
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biol (2014) 1.90
Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing. Nucleic Acids Res (2009) 1.88
Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A (2011) 1.88
Cell death and tissue remodeling in planarian regeneration. Dev Biol (2009) 1.87
The human placenta methylome. Proc Natl Acad Sci U S A (2013) 1.86
A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages. Development (2010) 1.83
FGFR-related gene nou-darake restricts brain tissues to the head region of planarians. Nature (2002) 1.80
Altered gene expression in morphologically normal epithelial cells from heterozygous carriers of BRCA1 or BRCA2 mutations. Cancer Prev Res (Phila) (2010) 1.80
A novel cross-disciplinary multi-institute approach to translational cancer research: lessons learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Cancer Inform (2007) 1.76
High-resolution fluorodeoxyglucose positron emission tomography with compression ("positron emission mammography") is highly accurate in depicting primary breast cancer. Breast J (2006) 1.76
Does axillary boost increase lymphedema compared with supraclavicular radiation alone after breast conservation? Int J Radiat Oncol Biol Phys (2008) 1.74
GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination. Genome Res (2013) 1.71
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res (2011) 1.70
Facilitating informed decisions regarding microsatellite instability testing among high-risk individuals diagnosed with colorectal cancer. J Clin Oncol (2010) 1.69
Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response. Dev Biol (2010) 1.68
Comparison of approaches for rational siRNA design leading to a new efficient and transparent method. Nucleic Acids Res (2007) 1.68
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proc Natl Acad Sci U S A (2013) 1.68
Genomic diversity and evolution of the head crest in the rock pigeon. Science (2013) 1.68
BMP signaling regulates the dorsal planarian midline and is needed for asymmetric regeneration. Development (2007) 1.66
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biol (2013) 1.65
Common breast cancer susceptibility loci are associated with triple-negative breast cancer. Cancer Res (2011) 1.65
A probabilistic model of 3' end formation in Caenorhabditis elegans. Nucleic Acids Res (2004) 1.60
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biol (2013) 1.59
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proc Natl Acad Sci U S A (2013) 1.59
High-resolution profiling and discovery of planarian small RNAs. Proc Natl Acad Sci U S A (2009) 1.53
Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Discov Med (2011) 1.52
Allometric scaling and proportion regulation in the freshwater planarian Schmidtea mediterranea. Dev Dyn (2003) 1.49
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiol (2013) 1.48
Identifying breast cancer patients most likely to benefit from aromatase inhibitor therapy after adjuvant radiation and tamoxifen. Cancer (2006) 1.45
VAAST 2.0: improved variant classification and disease-gene identification using a conservation-controlled amino acid substitution matrix. Genet Epidemiol (2013) 1.42
A prospective feasibility trial to determine the significance of the sentinel node gradient in breast cancer: a predictor of nodal metastasis location. Cancer (2008) 1.41
Longer first introns are a general property of eukaryotic gene structure. PLoS One (2008) 1.41
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. BMC Genomics (2010) 1.40
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes. PLoS One (2011) 1.34
Large-scale methylation domains mark a functional subset of neuronally expressed genes. Genome Res (2011) 1.34
Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression. Plant Cell (2008) 1.34
Quantitative measures for the management and comparison of annotated genomes. BMC Bioinformatics (2009) 1.33
An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics (2014) 1.32
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics (2014) 1.32