Published in Trends Genet on January 30, 2006
miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61
SMAD proteins control DROSHA-mediated microRNA maturation. Nature (2008) 9.67
microRNAs exhibit high frequency genomic alterations in human cancer. Proc Natl Acad Sci U S A (2006) 8.24
Spatial preferences of microRNA targets in 3' untranslated regions. BMC Genomics (2007) 4.99
miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res (2006) 4.91
Aberrant expression of oncogenic and tumor-suppressive microRNAs in cervical cancer is required for cancer cell growth. PLoS One (2008) 4.24
Real-time PCR quantification of precursor and mature microRNA. Methods (2008) 4.12
miR-210 links hypoxia with cell cycle regulation and is deleted in human epithelial ovarian cancer. Cancer Biol Ther (2007) 3.93
Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors. RNA (2007) 3.91
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res (2007) 3.59
A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains. Genome Res (2008) 3.25
Direct and sensitive miRNA profiling from low-input total RNA. RNA (2006) 3.17
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. Nucleic Acids Res (2007) 3.05
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res (2009) 2.90
miR-200b mediates post-transcriptional repression of ZFHX1B. RNA (2007) 2.67
Impact of normalization on miRNA microarray expression profiling. RNA (2009) 2.63
MicroRNAs and cardiac pathology. Nat Rev Cardiol (2009) 2.50
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. Genome Biol (2006) 2.49
Transforming growth factor-beta-regulated miR-24 promotes skeletal muscle differentiation. Nucleic Acids Res (2008) 2.44
microRNA-34c is a novel target to treat dementias. EMBO J (2011) 2.44
MicroRNA target prediction by expression analysis of host genes. Genome Res (2008) 2.21
miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data. Genome Biol (2010) 2.18
MicroRNA, a new paradigm for understanding immunoregulation, inflammation, and autoimmune diseases. Transl Res (2011) 2.15
Intra-platform repeatability and inter-platform comparability of microRNA microarray technology. PLoS One (2009) 2.02
Cloning and expression profiling of testis-expressed microRNAs. Dev Biol (2007) 2.00
Induction of specific micro RNA (miRNA) species by ROS-generating metal sulfates in primary human brain cells. J Inorg Biochem (2007) 1.99
MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology (2008) 1.96
Roles of small RNAs in tumor formation. Trends Mol Med (2010) 1.89
The role of the miR-200 family in epithelial-mesenchymal transition. Cancer Biol Ther (2010) 1.89
MicroRNA in TLR signaling and endotoxin tolerance. Cell Mol Immunol (2011) 1.86
Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis. Nucleic Acids Res (2012) 1.80
MicroRNA-21 targets peroxisome proliferators-activated receptor-alpha in an autoregulatory loop to modulate flow-induced endothelial inflammation. Proc Natl Acad Sci U S A (2011) 1.77
Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications. J Clin Invest (2007) 1.72
The interplay between transcription factors and microRNAs in genome-scale regulatory networks. Bioessays (2009) 1.72
Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS One (2008) 1.71
mirTools: microRNA profiling and discovery based on high-throughput sequencing. Nucleic Acids Res (2010) 1.70
Ectopic expression of miR-126*, an intronic product of the vascular endothelial EGF-like 7 gene, regulates prostein translation and invasiveness of prostate cancer LNCaP cells. J Mol Med (Berl) (2008) 1.68
miR-199a, a bone morphogenic protein 2-responsive MicroRNA, regulates chondrogenesis via direct targeting to Smad1. J Biol Chem (2009) 1.68
MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells. Stem Cells Dev (2007) 1.65
The roles of microRNAs in mammalian virus infection. Biochim Biophys Acta (2008) 1.64
miROrtho: computational survey of microRNA genes. Nucleic Acids Res (2008) 1.60
Generation of a conditionally replicating adenovirus based on targeted destruction of E1A mRNA by a cell type-specific MicroRNA. J Virol (2008) 1.58
Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening. Plant Cell (2011) 1.57
MicroRNAs, macrocontrol: regulation of miRNA processing. RNA (2010) 1.56
Small RNA metabolism in Arabidopsis. Trends Plant Sci (2008) 1.56
Mechanisms of miRNA-Mediated Gene Regulation from Common Downregulation to mRNA-Specific Upregulation. Int J Genomics (2014) 1.54
Quantitative differential expression analysis reveals miR-7 as major islet microRNA. Biochem Biophys Res Commun (2007) 1.54
The role of microRNAs in cancer. Yale J Biol Med (2006) 1.54
The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression. Genome Biol (2007) 1.53
MiR-133b promotes neural plasticity and functional recovery after treatment of stroke with multipotent mesenchymal stromal cells in rats via transfer of exosome-enriched extracellular particles. Stem Cells (2013) 1.51
MicroRNA profile predicts recurrence after resection in patients with hepatocellular carcinoma within the Milan Criteria. PLoS One (2011) 1.50
Altered microRNA expression profiles in postmortem brain samples from individuals with schizophrenia and bipolar disorder. Biol Psychiatry (2011) 1.49
Impact of microRNA regulation on variation in human gene expression. Genome Res (2012) 1.49
Mirna expression profiles identify drivers in colorectal and pancreatic cancers. PLoS One (2012) 1.47
MicroRNA 125b inhibition of B cell differentiation in germinal centers. Int Immunol (2010) 1.47
microRNAs: a new emerging class of players for disease diagnostics and gene therapy. J Cell Mol Med (2007) 1.43
miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. BMC Mol Biol (2008) 1.42
Structural biology of RNA silencing and its functional implications. Cold Spring Harb Symp Quant Biol (2006) 1.42
The microRNA-17-92 family of microRNA clusters in development and disease. Cancer J (2012) 1.42
MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans. BMC Bioinformatics (2007) 1.42
Poly(A)-binding protein modulates mRNA susceptibility to cap-dependent miRNA-mediated repression. RNA (2009) 1.32
Functional association of the Microprocessor complex with the spliceosome. Mol Cell Biol (2009) 1.32
microRNAs and genetic diseases. Pathogenetics (2009) 1.32
Deciphering the porcine intestinal microRNA transcriptome. BMC Genomics (2010) 1.30
An integrative analysis of microRNA and mRNA expression--a case study. Cancer Inform (2008) 1.30
Epigenetic Control of MicroRNA Expression and Aging. Curr Genomics (2009) 1.28
Clustered microRNAs' coordination in regulating protein-protein interaction network. BMC Syst Biol (2009) 1.28
Identification of novel Drosophila melanogaster microRNAs. PLoS One (2007) 1.28
An intronic microRNA silences genes that are functionally antagonistic to its host gene. Nucleic Acids Res (2008) 1.27
Cepred: predicting the co-expression patterns of the human intronic microRNAs with their host genes. PLoS One (2009) 1.27
MicroTar: predicting microRNA targets from RNA duplexes. BMC Bioinformatics (2006) 1.26
Regulation of microRNA processing in development, differentiation and cancer. J Cell Mol Med (2008) 1.25
MicroRNA miR-146a and further oncogenesis-related cellular microRNAs are dysregulated in HTLV-1-transformed T lymphocytes. Retrovirology (2008) 1.23
A transcription factor affinity-based code for mammalian transcription initiation. Genome Res (2009) 1.23
miR-7b, a microRNA up-regulated in the hypothalamus after chronic hyperosmolar stimulation, inhibits Fos translation. Proc Natl Acad Sci U S A (2006) 1.22
Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors. PLoS Pathog (2011) 1.22
miRNA-transcription factor interactions: a combinatorial regulation of gene expression. Mol Genet Genomics (2013) 1.21
miRNAs: effectors of environmental influences on gene expression and disease. Toxicol Sci (2008) 1.21
A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs. BMC Genomics (2011) 1.20
Integrating the MicroRNome into the study of lung disease. Am J Respir Crit Care Med (2008) 1.19
MicroRNA-125b induces metastasis by targeting STARD13 in MCF-7 and MDA-MB-231 breast cancer cells. PLoS One (2012) 1.19
Direct detection and quantification of microRNAs. Anal Biochem (2009) 1.16
Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system. Mol Psychiatry (2013) 1.16
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation. Genome Res (2007) 1.14
Regulation of microRNA expression and function by nuclear receptor signaling. Cell Biosci (2011) 1.12
Immuno-miRs: critical regulators of T-cell development, function and ageing. Immunology (2015) 1.11
Uremia impacts renal inflammatory cytokine gene expression in the setting of experimental acute kidney injury. Am J Physiol Renal Physiol (2009) 1.09
microRNA-99b acts as a tumor suppressor in non-small cell lung cancer by directly targeting fibroblast growth factor receptor 3. Exp Ther Med (2011) 1.07
Role of microRNAs in breast cancer. Cancer Biol Ther (2013) 1.07
miR-210 targets iron-sulfur cluster scaffold homologue in human trophoblast cell lines: siderosis of interstitial trophoblasts as a novel pathology of preterm preeclampsia and small-for-gestational-age pregnancies. Am J Pathol (2011) 1.06
miR-346 controls release of TNF-α protein and stability of its mRNA in rheumatoid arthritis via tristetraprolin stabilization. PLoS One (2011) 1.06
Differential expression of microRNAs with progression of gestation and inflammation in the human chorioamniotic membranes. Am J Obstet Gynecol (2007) 1.06
Hsa-miR-196a2 Rs11614913 polymorphism contributes to cancer susceptibility: evidence from 15 case-control studies. PLoS One (2011) 1.05
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins. Genome Biol (2009) 1.05
MicroRNAs and the cancer phenotype: profiling, signatures and clinical implications. Genome Med (2013) 1.05
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. BMC Bioinformatics (2011) 1.05
Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes. BMC Genomics (2013) 1.04
microRNA-101 inhibits lung cancer invasion through the regulation of enhancer of zeste homolog 2. Exp Ther Med (2011) 1.03
Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation. Nucleic Acids Res (2008) 1.03
Optimization and characterization of tRNA-shRNA expression constructs. Nucleic Acids Res (2007) 1.02
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell (2006) 11.98
miR-29 miRNAs activate p53 by targeting p85 alpha and CDC42. Nat Struct Mol Biol (2008) 4.81
Expanding the microRNA targeting code: functional sites with centered pairing. Mol Cell (2010) 4.20
miTarget: microRNA target gene prediction using a support vector machine. BMC Bioinformatics (2006) 2.08
Discovery of microRNA-mRNA modules via population-based probabilistic learning. Bioinformatics (2007) 1.70
Degradome sequencing reveals an endogenous microRNA target in C. elegans. FEBS Lett (2013) 0.78
The present and future of de novo whole-genome assembly. Brief Bioinform (2016) 0.75
Identification of expression quantitative trait loci by the interaction analysis using genetic algorithm. BMC Proc (2007) 0.75