Published in Genome Biol on March 08, 2006
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J (2008) 3.40
Sporulation in the budding yeast Saccharomyces cerevisiae. Genetics (2011) 1.88
RNA methylation by the MIS complex regulates a cell fate decision in yeast. PLoS Genet (2012) 1.53
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion. PLoS Genet (2016) 1.43
Septin stability and recycling during dynamic structural transitions in cell division and development. Curr Biol (2008) 1.27
Systematic screen reveals new functional dynamics of histones H3 and H4 during gametogenesis. Genes Dev (2010) 1.17
Meiotic recombination intermediates are resolved with minimal crossover formation during return-to-growth, an analogue of the mitotic cell cycle. PLoS Genet (2011) 1.13
Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. Genome Biol (2007) 1.07
The Sum1/Ndt80 transcriptional switch and commitment to meiosis in Saccharomyces cerevisiae. Microbiol Mol Biol Rev (2012) 1.07
Separation of DNA replication from the assembly of break-competent meiotic chromosomes. PLoS Genet (2012) 1.03
Reuse, replace, recycle. Specificity in subunit inheritance and assembly of higher-order septin structures during mitotic and meiotic division in budding yeast. Cell Cycle (2009) 1.00
Genome reprogramming during sporulation. Int J Dev Biol (2009) 0.99
The Ras/cAMP pathway and the CDK-like kinase Ime2 regulate the MAPK Smk1 and spore morphogenesis in Saccharomyces cerevisiae. Genetics (2008) 0.89
Genome-wide mapping of histone H4 serine-1 phosphorylation during sporulation in Saccharomyces cerevisiae. Nucleic Acids Res (2010) 0.89
Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae. BMC Syst Biol (2011) 0.88
Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes. BMC Genomics (2010) 0.86
The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae. Mol Cell Biol (2012) 0.85
Elevated mutation rate during meiosis in Saccharomyces cerevisiae. PLoS Genet (2015) 0.83
Sequestration of mRNAs Modulates the Timing of Translation during Meiosis in Budding Yeast. Mol Cell Biol (2015) 0.81
Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation. BMC Syst Biol (2010) 0.80
A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase. BMC Syst Biol (2010) 0.80
Positive feedback of NDT80 expression ensures irreversible meiotic commitment in budding yeast. PLoS Genet (2014) 0.80
Post-transcriptional regulation in budding yeast meiosis. Curr Genet (2015) 0.78
Trans-Lesion DNA Polymerases May Be Involved in Yeast Meiosis. G3 (Bethesda) (2013) 0.78
Acetate regulation of spore formation is under the control of the Ras/cyclic AMP/protein kinase A pathway and carbon dioxide in Saccharomyces cerevisiae. Eukaryot Cell (2012) 0.78
Assembly, molecular organization, and membrane-binding properties of development-specific septins. J Cell Biol (2016) 0.78
Bdf1 Bromodomains are Essential for Meiosis and the Expression of Meiotic-Specific Genes. PLoS Genet (2017) 0.75
Predicted RNA Binding Proteins Pes4 and Mip6 Regulate mRNA Levels, Translation, and Localization during Sporulation in Budding Yeast. Mol Cell Biol (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res (2002) 76.95
Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol (1961) 65.10
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell (1998) 62.20
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast (1998) 48.29
The transcriptional program of sporulation in budding yeast. Science (1998) 37.23
Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell (2000) 36.09
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A (1999) 35.16
A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell (1998) 19.67
NCBI GEO: mining millions of expression profiles--database and tools. Nucleic Acids Res (2005) 17.61
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science (2000) 13.20
Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell (2001) 9.63
Evidence for two types of allelic recombination in yeast. Genetics (1963) 8.07
Meiotic chromosomes: it takes two to tango. Genes Dev (1997) 6.90
A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature (2003) 6.25
Sporulation in Saccharomyces cerevisiae: premeiotic DNA synthesis, readiness and commitment. Exp Cell Res (1972) 5.02
The core meiotic transcriptome in budding yeasts. Nat Genet (2000) 4.64
Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae. Mol Microbiol (1999) 3.98
Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae. EMBO J (1999) 3.65
IME1, a positive regulator gene of meiosis in S. cerevisiae. Cell (1988) 3.63
Gametogenesis in yeast is regulated by a transcriptional cascade dependent on Ndt80. Mol Cell (1998) 3.58
Meiosis: how could it work? Proc Natl Acad Sci U S A (1996) 3.40
Defining transcription modules using large-scale gene expression data. Bioinformatics (2004) 3.33
Continuous representations of time-series gene expression data. J Comput Biol (2003) 3.32
A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase. Proc Natl Acad Sci U S A (1985) 3.02
A screen for genes required for meiosis and spore formation based on whole-genome expression. Curr Biol (2001) 2.98
A transcriptional cascade governs entry into meiosis in Saccharomyces cerevisiae. Mol Cell Biol (1989) 2.94
Initiation of meiosis in yeast mutants defective in adenylate cyclase and cyclic AMP-dependent protein kinase. Cell (1983) 2.91
Aligning gene expression time series with time warping algorithms. Bioinformatics (2001) 2.82
Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1. Mol Cell Biol (1996) 2.79
Signal transduction in yeast. Yeast (1994) 2.64
Large-scale functional genomic analysis of sporulation and meiosis in Saccharomyces cerevisiae. Genetics (2003) 2.55
Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Rep (2003) 2.51
Role of Polo-like kinase CDC5 in programming meiosis I chromosome segregation. Science (2003) 2.49
The function of ras genes in Saccharomyces cerevisiae. Adv Cancer Res (1990) 2.39
RAS genes in Saccharomyces cerevisiae: signal transduction in search of a pathway. Trends Genet (1991) 2.29
Control of pseudohyphae formation in Saccharomyces cerevisiae. FEMS Microbiol Rev (2001) 2.26
Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2002) 2.09
Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast. PLoS Biol (2004) 1.76
Rose scent: genomics approach to discovering novel floral fragrance-related genes. Plant Cell (2002) 1.76
Commitment to meiosis in Saccharomyces cerevisiae: involvement of the SPO14 gene. Genetics (1992) 1.69
G1 cyclins block the Ime1 pathway to make mitosis and meiosis incompatible in budding yeast. EMBO J (1999) 1.56
Repression by the yeast meiotic inhibitor RME1. Genes Dev (1993) 1.55
Initiation of meiosis in cell cycle initiation mutants of Saccharomyces cerevisiae. Exp Cell Res (1978) 1.55
Some observations on sporulation in Saccharomyces. C R Trav Lab Carlsberg Chim (1958) 1.52
The adenylate cyclase/protein kinase cascade regulates entry into meiosis in Saccharomyces cerevisiae through the gene IME1. EMBO J (1990) 1.45
Regulation of the premiddle and middle phases of expression of the NDT80 gene during sporulation of Saccharomyces cerevisiae. Mol Cell Biol (2002) 1.43
Reversal of cell determination in yeast meiosis: postcommitment arrest allows return to mitotic growth. Proc Natl Acad Sci U S A (1994) 1.34
Systematic analysis of sporulation phenotypes in 624 non-lethal homozygous deletion strains of Saccharomyces cerevisiae. Yeast (2002) 1.33
The G(1) cyclin Cln3 promotes cell cycle entry via the transcription factor Swi6. Mol Cell Biol (2002) 1.32
Switching yeast from meiosis to mitosis: double-strand break repair, recombination and synaptonemal complex. Genes Cells (1997) 1.28
Multiple and distinct activation and repression sequences mediate the regulated transcription of IME1, a transcriptional activator of meiosis-specific genes in Saccharomyces cerevisiae. Mol Cell Biol (1998) 1.27
A positive regulator of mitosis, Sok2, functions as a negative regulator of meiosis in Saccharomyces cerevisiae. Mol Cell Biol (2001) 1.27
GATA-3 transcriptional imprinting in Th2 lymphocytes: a mathematical model. Proc Natl Acad Sci U S A (2002) 1.23
Morphogenesis of the synapton during yeast meiosis. Chromosoma (1979) 1.18
The CLN3/SWI6/CLN2 pathway and SNF1 act sequentially to regulate meiotic initiation in Saccharomyces cerevisiae. Genes Cells (2002) 1.07
Positive and negative feedback loops affect the transcription of IME1, a positive regulator of meiosis in Saccharomyces cerevisiae. Dev Genet (1995) 0.96
Commitment to the mitotic cell cycle in yeast in relation to meiosis. Exp Cell Res (1977) 0.88
Sex and the single (double-strand) break. Mol Cell (2002) 0.87
Analysis of the kar3 meiotic arrest in Saccharomyces cerevisiae. Cell Cycle (2004) 0.87
Meiosis: polo, FEAR and the art of dividing reductionally. Curr Biol (2003) 0.78
Noise in protein expression scales with natural protein abundance. Nat Genet (2006) 8.03
Revealing modular organization in the yeast transcriptional network. Nat Genet (2002) 6.73
Similarities and differences in genome-wide expression data of six organisms. PLoS Biol (2003) 4.75
Robustness of the BMP morphogen gradient in Drosophila embryonic patterning. Nature (2002) 4.21
Two strategies for gene regulation by promoter nucleosomes. Genome Res (2008) 4.19
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat Biotechnol (2003) 4.06
Mechanisms of noise-resistance in genetic oscillators. Proc Natl Acad Sci U S A (2002) 3.78
A genetic signature of interspecies variations in gene expression. Nat Genet (2006) 3.61
Defining transcription modules using large-scale gene expression data. Bioinformatics (2004) 3.33
A yeast hybrid provides insight into the evolution of gene expression regulation. Science (2009) 3.25
Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (2005) 3.10
Pre-steady-state decoding of the Bicoid morphogen gradient. PLoS Biol (2007) 2.81
Iterative signature algorithm for the analysis of large-scale gene expression data. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 2.51
Self-enhanced ligand degradation underlies robustness of morphogen gradients. Dev Cell (2003) 2.40
Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. PLoS Genet (2005) 2.36
Scaling of the BMP activation gradient in Xenopus embryos. Nature (2008) 2.31
Noise propagation and signaling sensitivity in biological networks: a role for positive feedback. PLoS Comput Biol (2007) 1.94
Expansion-repression mechanism for scaling the Dpp activation gradient in Drosophila wing imaginal discs. Curr Biol (2011) 1.79
Four linked genes participate in controlling sporulation efficiency in budding yeast. PLoS Genet (2006) 1.69
A biological solution to a fundamental distributed computing problem. Science (2011) 1.62
Threshold responses to morphogen gradients by zero-order ultrasensitivity. Mol Syst Biol (2005) 1.59
Promoter architecture and the evolvability of gene expression. J Biol (2009) 1.47
Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Mol Syst Biol (2010) 1.44
On the relation between promoter divergence and gene expression evolution. Mol Syst Biol (2008) 1.43
The pattern and evolution of yeast promoter bendability. Trends Genet (2007) 1.37
Elucidating mechanisms underlying robustness of morphogen gradients. Curr Opin Genet Dev (2004) 1.36
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol (2007) 1.36
Strategy of transcription regulation in the budding yeast. PLoS One (2007) 1.30
The evolving doublecortin (DCX) superfamily. BMC Genomics (2006) 1.29
Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet (2010) 1.29
Evolution of gene sequence and gene expression are not correlated in yeast. Trends Genet (2008) 1.28
Comparative biology: beyond sequence analysis. Curr Opin Biotechnol (2007) 1.24
Scaling of morphogen gradients by an expansion-repression integral feedback control. Proc Natl Acad Sci U S A (2010) 1.19
Noise-mean relationship in mutated promoters. Genome Res (2012) 1.18
The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biol (2005) 1.18
Widespread remodeling of mid-coding sequence nucleosomes by Isw1. Genome Biol (2010) 1.18
MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res (2010) 1.18
Expression noise and acetylation profiles distinguish HDAC functions. Mol Cell (2012) 1.17
Chromatin regulators as capacitors of interspecies variations in gene expression. Mol Syst Biol (2010) 1.14
Linking the signaling cascades and dynamic regulatory networks controlling stress responses. Genome Res (2012) 1.14
Common and divergent roles for members of the mouse DCX superfamily. Cell Cycle (2006) 1.13
Meiotic recombination intermediates are resolved with minimal crossover formation during return-to-growth, an analogue of the mitotic cell cycle. PLoS Genet (2011) 1.13
Evaluating putative mechanisms of the mitotic spindle checkpoint. Proc Natl Acad Sci U S A (2005) 1.12
Re-examining the stability of the Bicoid morphogen gradient. Cell (2008) 1.10
Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. Genome Biol (2007) 1.07
The competitive advantage of a dual-transporter system. Science (2011) 1.06
Fine tuning of globin gene expression by DNA methylation. PLoS One (2006) 1.04
Morphogen gradient formation in a complex environment: an anomalous diffusion model. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.02
Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns. Mol Cell Biol (2011) 1.01
Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states. PLoS Comput Biol (2006) 1.00
Coordination of gene expression with growth rate: a feedback or a feed-forward strategy? FEBS Lett (2009) 0.98
Error minimization in lateral inhibition circuits. Sci Signal (2010) 0.98
Scaling of morphogen gradients. Curr Opin Genet Dev (2011) 0.96
Noise resistance in the spindle assembly checkpoint. Mol Syst Biol (2006) 0.96
Self-organized shuttling: generating sharp dorsoventral polarity in the early Drosophila embryo. Cell (2012) 0.94
Computational verification of protein-protein interactions by orthologous co-expression. BMC Bioinformatics (2005) 0.94
Extensive divergence of yeast stress responses through transitions between induced and constitutive activation. Proc Natl Acad Sci U S A (2011) 0.93
Budding yeast escape commitment to the phosphate starvation program using gene expression noise. Curr Biol (2013) 0.90
Repression and activation domains of RME1p structurally overlap, but differ in genetic requirements. Mol Biol Cell (2002) 0.90
Mammalian meiosis involves DNA double-strand breaks with 3' overhangs. Chromosoma (2003) 0.89
APC/CCdh1 specific degradation of Hsl1 and Clb2 is required for proper stress responses of S. cerevisiae. Cell Cycle (2009) 0.88
Nud1p, the yeast homolog of Centriolin, regulates spindle pole body inheritance in meiosis. EMBO J (2006) 0.88
Creating gradients by morphogen shuttling. Trends Genet (2013) 0.86
Combination of genomic approaches with functional genetic experiments reveals two modes of repression of yeast middle-phase meiosis genes. BMC Genomics (2010) 0.86
Autocorrelation analysis reveals widespread spatial biases in microarray experiments. BMC Genomics (2007) 0.86
Scaling morphogen gradients during tissue growth by a cell division rule. Development (2014) 0.85
Efficiency and specificity in microRNA biogenesis. Nat Struct Mol Biol (2012) 0.85
Inferring regulatory mechanisms from patterns of evolutionary divergence. Mol Syst Biol (2011) 0.85
Robust selection of sensory organ precursors by the Notch-Delta pathway. Curr Opin Cell Biol (2011) 0.84
Disentangling signaling gradients generated by equivalent sources. J Biol Phys (2011) 0.83
Nucleosome organization affects the sensitivity of gene expression to promoter mutations. Mol Cell (2012) 0.82
Interpreting clone-mediated perturbations of morphogen profiles. Dev Biol (2005) 0.82
Increasing population growth by asymmetric segregation of a limiting resource during cell division. Mol Syst Biol (2013) 0.81
Functional conservation of the yeast and Arabidopsis RAD54-like genes. Genetics (2008) 0.80
Involvement of Sir2/4 in silencing of DNA breakage and recombination on mouse YACs during yeast meiosis. Mol Biol Cell (2005) 0.80
Reverse engineering of the spindle assembly checkpoint. PLoS One (2009) 0.79
Separation of roles of Zip1 in meiosis revealed in heterozygous mutants of Saccharomyces cerevisiae. Mol Genet Genomics (2009) 0.79
Down-regulation of tricarboxylic acid (TCA) cycle genes blocks progression through the first mitotic division in Caenorhabditis elegans embryos. Proc Natl Acad Sci U S A (2014) 0.78
Improved readout precision of the Bicoid morphogen gradient by early decoding. J Biol Phys (2011) 0.78
Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program. BMC Biol (2014) 0.78
Scaling of dorsal-ventral patterning in the Xenopus laevis embryo. Bioessays (2013) 0.78
Promoter nucleosome organization shapes the evolution of gene expression. PLoS Genet (2012) 0.77
Physical aspects of precision in genetic regulation. J Biol Phys (2010) 0.77
The era of systems developmental biology. Curr Opin Genet Dev (2011) 0.77
The ups and downs of biological timers. Theor Biol Med Model (2005) 0.77
EGF receptor signaling - a quantitative view. Curr Biol (2007) 0.76