Published in Curr Biol on May 09, 2006
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell (2008) 9.02
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol (2008) 5.00
Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol (2009) 4.32
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Common functions for diverse small RNAs of land plants. Plant Cell (2007) 3.30
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol (2008) 3.09
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis. Development (2006) 2.93
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell (2008) 2.87
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
SERRATE: a new player on the plant microRNA scene. EMBO Rep (2006) 2.78
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A (2010) 2.74
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell (2010) 2.51
Pattern formation via small RNA mobility. Genes Dev (2009) 2.50
AGO1-miR173 complex initiates phased siRNA formation in plants. Proc Natl Acad Sci U S A (2008) 2.34
A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev (2007) 2.29
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci U S A (2007) 2.28
Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell (2010) 2.10
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96
Rice MicroRNA effector complexes and targets. Plant Cell (2009) 1.93
Recent advances in PAMP-triggered immunity against bacteria: pattern recognition receptors watch over and raise the alarm. Plant Physiol (2009) 1.84
Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev (2007) 1.81
Role of small RNAs in host-microbe interactions. Annu Rev Phytopathol (2010) 1.75
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc Natl Acad Sci U S A (2009) 1.72
Control of leaf and vein development by auxin. Cold Spring Harb Perspect Biol (2010) 1.70
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell (2013) 1.69
TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Plant Cell (2010) 1.67
Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci U S A (2012) 1.59
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet (2010) 1.56
ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis. Plant Cell (2007) 1.52
Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol (2007) 1.50
Signals and prepatterns: new insights into organ polarity in plants. Genes Dev (2009) 1.49
The small interfering RNA production pathway is required for shoot meristem initiation in rice. Proc Natl Acad Sci U S A (2007) 1.46
A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII genes. Plant Cell (2007) 1.42
miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant Physiol (2011) 1.34
Components of the Arabidopsis mRNA decapping complex are required for early seedling development. Plant Cell (2007) 1.33
miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis. J Exp Bot (2010) 1.31
Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell (2007) 1.30
BLADE-ON-PETIOLE 1 and 2 control Arabidopsis lateral organ fate through regulation of LOB domain and adaxial-abaxial polarity genes. Plant Cell (2007) 1.29
Genome-wide profiling of populus small RNAs. BMC Genomics (2009) 1.28
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biol (2009) 1.26
Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics (2011) 1.22
Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. J Exp Bot (2013) 1.22
Failure of the tomato trans-acting short interfering RNA program to regulate AUXIN RESPONSE FACTOR3 and ARF4 underlies the wiry leaf syndrome. Plant Cell (2012) 1.22
Small RNAs in development - insights from plants. Curr Opin Genet Dev (2012) 1.21
Small RNAs - secrets and surprises of the genome. Plant J (2010) 1.20
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol (2009) 1.19
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell (2014) 1.18
Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation. Plant Physiol (2012) 1.15
The proteolytic function of the Arabidopsis 26S proteasome is required for specifying leaf adaxial identity. Plant Cell (2006) 1.14
Endogenous TasiRNAs mediate non-cell autonomous effects on gene regulation in Arabidopsis thaliana. PLoS One (2009) 1.14
Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS One (2009) 1.13
Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit. Planta (2007) 1.12
An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis. Plant Mol Biol (2011) 1.11
Epigenetic reprogramming during vegetative phase change in maize. Proc Natl Acad Sci U S A (2010) 1.10
Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing. Plant Physiol (2012) 1.10
AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier in reproductive organ patterning and differentiation. PLoS Biol (2009) 1.10
Genome-wide profiling of miRNAs and other small non-coding RNAs in the Verticillium dahliae-inoculated cotton roots. PLoS One (2012) 1.10
Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics (2011) 1.09
Ectopic expression of miR160 results in auxin hypersensitivity, cytokinin hyposensitivity, and inhibition of symbiotic nodule development in soybean. Plant Physiol (2013) 1.09
The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acids Res (2008) 1.09
Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis. Planta (2012) 1.07
Cell-to-cell trafficking of RNA and RNA silencing through plasmodesmata. Protoplasma (2010) 1.06
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis. EMBO J (2012) 1.06
The Functions of RNA-Dependent RNA Polymerases in Arabidopsis. Arabidopsis Book (2011) 1.05
Comparative analysis reveals dynamic changes in miRNAs and their targets and expression during somatic embryogenesis in longan (Dimocarpus longan Lour.). PLoS One (2013) 1.04
MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots. Plant Cell (2013) 1.03
Expression of microRNAs and its regulation in plants. Semin Cell Dev Biol (2010) 1.03
ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves. Plant Cell (2010) 1.03
Leaf development. Arabidopsis Book (2013) 1.02
miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens. Plant Cell (2012) 1.02
High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.). PLoS One (2011) 1.02
Perspectives on leaf dorsoventral polarity. J Plant Res (2010) 1.02
Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize. Plant Cell Rep (2011) 1.00
RNAi in Plants: An Argonaute-Centered View. Plant Cell (2016) 0.98
Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution. Mol Genet Genomics (2012) 0.97
Dynamic expression of small RNA populations in larch (Larix leptolepis). Planta (2012) 0.95
Contribution of small RNA pathway components in plant immunity. Mol Plant Microbe Interact (2013) 0.94
Genome-wide analysis of the auxin-responsive transcriptome downstream of iaa1 and its expression analysis reveal the diversity and complexity of auxin-regulated gene expression. J Exp Bot (2009) 0.94
WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice. Plant Physiol (2010) 0.93
Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs. RNA Biol (2013) 0.93
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biol Evol (2010) 0.93
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. Plant Mol Biol (2013) 0.92
The fascinating world of RNA interference. Int J Biol Sci (2009) 0.92
Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange. Planta (2010) 0.92
Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells. BMC Genomics (2013) 0.90
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol (2013) 0.89
AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Plant J (2014) 0.89
Small RNA regulation of ovule development in the cotton plant, G. hirsutum L. BMC Plant Biol (2008) 0.88
In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways. BMC Plant Biol (2011) 0.88
Rapid and efficient isolation of high-quality small RNAs from recalcitrant plant species rich in polyphenols and polysaccharides. PLoS One (2014) 0.86
Epigenetic Mechanisms Are Critical for the Regulation of WUSCHEL Expression in Floral Meristems. Plant Physiol (2015) 0.86
tasiRNA-ARF pathway moderates floral architecture in arabidopsis plants subjected to drought stress. Biomed Res Int (2014) 0.86
Non-cell-autonomous regulation of crucifer self-incompatibility by Auxin Response Factor ARF3. Proc Natl Acad Sci U S A (2012) 0.85
Novel and Recently Evolved MicroRNA Clusters Regulate Expansive F-BOX Gene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry. Plant Physiol (2015) 0.85
Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development. Plant Cell Physiol (2013) 0.83
Identification and comparative analysis of cadmium tolerance-associated miRNAs and their targets in two soybean genotypes. PLoS One (2013) 0.83
Role of RNA interference (RNAi) in the Moss Physcomitrella patens. Int J Mol Sci (2013) 0.82
A uniform system for microRNA annotation. RNA (2003) 20.28
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science (2002) 18.37
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
Genetic and functional diversification of small RNA pathways in plants. PLoS Biol (2004) 12.21
Control of leaf morphogenesis by microRNAs. Nature (2003) 11.36
Role of transposable elements in heterochromatin and epigenetic control. Nature (2004) 10.51
Endogenous and silencing-associated small RNAs in plants. Plant Cell (2002) 10.07
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. Dev Cell (2003) 8.42
Genome streamlining in a cosmopolitan oceanic bacterium. Science (2005) 8.11
Criteria for annotation of plant MicroRNAs. Plant Cell (2008) 7.49
High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One (2007) 7.34
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol (2003) 6.36
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet (2004) 6.34
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science (2006) 6.33
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell (2008) 5.73
Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet (2007) 5.68
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2005) 5.16
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
Expression of Arabidopsis MIRNA genes. Plant Physiol (2005) 4.85
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet (2011) 4.65
PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Mol Cell (2008) 4.48
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev (2004) 3.78
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol (2004) 3.54
ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Res (2005) 3.46
Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline. Mol Cell (2009) 3.43
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Evolution and functional diversification of MIRNA genes. Plant Cell (2011) 3.07
Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J (2006) 3.00
Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell (2007) 2.90
Retracted Small RNA duplexes function as mobile silencing signals between plant cells. Science (2010) 2.76
Identification and characterization of human cytomegalovirus-encoded microRNAs. J Virol (2005) 2.73
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol (2010) 2.63
Pattern formation via small RNA mobility. Genes Dev (2009) 2.50
AGO1-miR173 complex initiates phased siRNA formation in plants. Proc Natl Acad Sci U S A (2008) 2.34
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell (2010) 2.22
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J (2007) 2.15
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci U S A (2009) 2.08
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell (2010) 2.02
Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA (2009) 1.97
Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr Biol (2002) 1.95
Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins. Mol Cell (2008) 1.94
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc Natl Acad Sci U S A (2009) 1.72
Update of ASRP: the Arabidopsis Small RNA Project database. Nucleic Acids Res (2007) 1.62
Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryot Cell (2010) 1.52
Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiol (2007) 1.52
Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO. PLoS Pathog (2010) 1.50
Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell (2012) 1.49
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences. PLoS One (2011) 1.49
Regulation and functional specialization of small RNA-target nodes during plant development. Curr Opin Plant Biol (2009) 1.45
miRNA Target Prediction in Plants. Methods Mol Biol (2010) 1.39
Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis. Nucleic Acids Res (2010) 1.37
Characterization of unique small RNA populations from rice grain. PLoS One (2008) 1.31
Genome-wide profiling of populus small RNAs. BMC Genomics (2009) 1.28
Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis. FEBS Lett (2006) 1.26
miRNAs in the biogenesis of trans-acting siRNAs in higher plants. Semin Cell Dev Biol (2010) 1.25
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2011) 1.23
Suppressor of RNA silencing encoded by Beet yellows virus. Virology (2003) 1.20
Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics (2011) 1.18
Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon. Virology (2005) 1.13
New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis. Plant Physiol (2014) 1.13
The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genet (2011) 1.13
RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein. Plant Physiol (2010) 1.01
Endogenous small RNAs in grain: semi-quantification and sequence homology to human and animal genes. Food Chem Toxicol (2008) 0.99
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biol (2013) 0.97
MUT-16 promotes formation of perinuclear mutator foci required for RNA silencing in the C. elegans germline. Genes Dev (2012) 0.96
The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Curr Biol (2012) 0.96
High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes. Genome Res (2013) 0.93
Host-specific involvement of the HC protein in the long-distance movement of potyviruses. J Virol (2002) 0.90
Insights into the multifactorial nature of preterm birth: proteomic profiling of the maternal serum glycoproteome and maternal serum peptidome among women in preterm labor. Am J Obstet Gynecol (2010) 0.88
The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases. BMC Bioinformatics (2007) 0.87
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs. PLoS One (2013) 0.87
Virus-derived gene expression and RNA interference vector for grapevine. J Virol (2012) 0.86
Splicing and dicing with a SERRATEd edge. Proc Natl Acad Sci U S A (2008) 0.81
Preparation of Multiplexed Small RNA Libraries From Plants. Bio Protoc (2014) 0.79
Large-scale sequencing of plant small RNAs. Methods Mol Biol (2011) 0.78