Published in Int J Mol Sci on January 14, 2013
RNAi in Plants: An Argonaute-Centered View. Plant Cell (2016) 0.98
Identification and analysis of red sea mangrove (Avicennia marina) microRNAs by high-throughput sequencing and their association with stress responses. PLoS One (2013) 0.88
Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants. Plant Cell (2015) 0.85
Peculiar evolutionary history of miR390-guided TAS3-like genes in land plants. ScientificWorldJournal (2013) 0.80
Subtractive hybridization-mediated analysis of genes and in silico prediction of associated microRNAs under waterlogged conditions in sugarcane (Saccharum spp.). FEBS Open Bio (2014) 0.79
Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS One (2013) 0.76
MicroRNAs: genomics, biogenesis, mechanism, and function. Cell (2004) 198.59
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62
Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature (2001) 38.75
An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature (2000) 23.17
RNA interference. Nature (2002) 22.28
MicroRNA genes are transcribed by RNA polymerase II. EMBO J (2004) 20.65
MicroRNAs in plants. Genes Dev (2002) 20.12
A species of small antisense RNA in posttranscriptional gene silencing in plants. Science (1999) 19.34
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol (2002) 15.13
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell (2005) 14.81
Genetic and functional diversification of small RNA pathways in plants. PLoS Biol (2004) 12.21
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev (2006) 11.71
The Drosha-DGCR8 complex in primary microRNA processing. Genes Dev (2004) 11.58
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science (2003) 11.43
RNA silencing in plants. Nature (2004) 11.12
Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in trans. Plant Cell (1990) 10.56
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell (2000) 10.42
Origin, biogenesis, and activity of plant microRNAs. Cell (2009) 9.96
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (2003) 9.54
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science (2003) 9.53
Perspective: machines for RNAi. Genes Dev (2005) 9.37
Establishment and maintenance of a heterochromatin domain. Science (2002) 9.34
Argonaute proteins: key players in RNA silencing. Nat Rev Mol Cell Biol (2008) 8.96
RNAi-mediated targeting of heterochromatin by the RITS complex. Science (2004) 8.73
Two classes of short interfering RNA in RNA silencing. EMBO J (2002) 8.54
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev (2004) 8.18
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell (2004) 7.68
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell (2005) 7.58
Widespread translational inhibition by plant miRNAs and siRNAs. Science (2008) 7.51
Methylation as a crucial step in plant microRNA biogenesis. Science (2005) 7.16
Distinct populations of primary and secondary effectors during RNAi in C. elegans. Science (2006) 7.15
Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell (2006) 7.06
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev (2004) 6.69
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci U S A (2004) 6.61
RNAi-mediated pathways in the nucleus. Nat Rev Genet (2005) 6.55
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol (2003) 6.36
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A (2005) 6.09
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev (2005) 6.04
Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol (2007) 5.86
Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat Genet (1999) 5.83
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell (2008) 5.78
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell (2008) 5.73
A two-hit trigger for siRNA biogenesis in plants. Cell (2006) 5.60
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A (2002) 5.49
Secondary siRNAs result from unprimed RNA synthesis and form a distinct class. Science (2006) 5.49
Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell (2002) 5.39
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2005) 5.16
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell (2002) 5.07
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol (2005) 4.98
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell (2006) 4.82
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol (2003) 4.27
RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing. Nat Genet (2004) 4.23
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat Genet (2005) 4.00
Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell (2005) 3.92
DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol (2006) 3.90
Antiquity of microRNAs and their targets in land plants. Plant Cell (2005) 3.88
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev (2004) 3.77
Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell (2002) 3.73
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biol (2006) 3.71
Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol Microbiol (1992) 3.67
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev Cell (2004) 3.63
Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci U S A (2005) 3.57
Plant ARGONAUTES. Trends Plant Sci (2008) 3.56
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J (2006) 3.55
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol (2004) 3.54
In vitro reconstitution of the human RISC-loading complex. Proc Natl Acad Sci U S A (2008) 3.43
RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet (2006) 3.41
Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell (2007) 3.40
Common functions for diverse small RNAs of land plants. Plant Cell (2007) 3.30
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J (2006) 3.19
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide. Nucleic Acids Res (2006) 3.14
Suppression of beta-1,3-glucanase transgene expression in homozygous plants. EMBO J (1992) 3.14
Transcriptional control of gene expression by microRNAs. Cell (2010) 3.05
Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway. Curr Biol (2006) 3.04
Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J (2008) 3.03
AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell (2006) 2.94
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs). Proc Natl Acad Sci U S A (2008) 2.92
RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production. Proc Natl Acad Sci U S A (2004) 2.88
DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis. Curr Biol (2001) 2.85
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta (2011) 2.84
Retracted An endogenous, systemic RNAi pathway in plants. EMBO J (2010) 2.82
MicroRNA precursors in motion: exportin-5 mediates their nuclear export. Trends Cell Biol (2004) 2.80
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J (2007) 2.79
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A (2010) 2.74
DNA methylation mediated by a microRNA pathway. Mol Cell (2010) 2.74
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell (2006) 2.73
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res (2008) 2.70
Efficient gene targeting in the moss Physcomitrella patens. Plant J (1997) 2.64
Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat Biotechnol (2006) 2.64
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell (2007) 2.55
Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature (2010) 2.53
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell (2010) 2.51
Plant nuclear gene knockout reveals a role in plastid division for the homolog of the bacterial cell division protein FtsZ, an ancestral tubulin. Proc Natl Acad Sci U S A (1998) 2.50
Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants. Curr Biol (2007) 2.49
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc Natl Acad Sci U S A (2005) 2.47
RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A (2002) 2.46
Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell (2009) 2.27
Transcriptional control of gene expression by microRNAs. Cell (2010) 3.05
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. Plant Physiol (2007) 1.74
Dating the early evolution of plants: detection and molecular clock analyses of orthologs. Mol Genet Genomics (2007) 1.39
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol (2007) 1.38
Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss. Plant J (2006) 1.32
Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development. PLoS Genet (2008) 1.31
Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling. Plant Mol Biol (2009) 1.09
The moss Physcomitrella patens contains cyclopentenones but no jasmonates: mutations in allene oxide cyclase lead to reduced fertility and altered sporophyte morphology. New Phytol (2010) 1.05
A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens. Proc Natl Acad Sci U S A (2008) 1.02
Nonflowering plants possess a unique folate-dependent phenylalanine hydroxylase that is localized in chloroplasts. Plant Cell (2010) 0.99
The use of propofol for sedation in medical thoracoscopy. Respiration (2015) 0.96
Specific gene silencing by artificial MicroRNAs in Physcomitrella patens: an alternative to targeted gene knockouts. Plant Physiol (2008) 0.94
DICER-LIKE3 activity in Physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility. Mol Plant (2012) 0.93
Talc pleurodesis: basic fibroblast growth factor mediates pleural fibrosis. Chest (2004) 0.93
The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell (2013) 0.93
Biosynthesis of C9-aldehydes in the moss Physcomitrella patens. Biochim Biophys Acta (2006) 0.90
Involvement of a class III peroxidase and the mitochondrial protein TSPO in oxidative burst upon treatment of moss plants with a fungal elicitor. Mol Plant Microbe Interact (2012) 0.89
MicroRNA534a control of BLADE-ON-PETIOLE 1 and 2 mediates juvenile-to-adult gametophyte transition in Physcomitrella patens. Plant J (2011) 0.87
Sulphur limitation and early sulphur deficiency responses in poplar: significance of gene expression, metabolites, and plant hormones. J Exp Bot (2011) 0.86
Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J (2014) 0.85
The moss Physcomitrella patens: methods and tools from cultivation to targeted analysis of gene function. Int J Dev Biol (2013) 0.81
Moss (Physcomitrella patens) functional genomics--Gene discovery and tool development, with implications for crop plants and human health. Brief Funct Genomic Proteomic (2005) 0.80
Skill memory escaping from distraction by sleep--evidence from dual-task performance. PLoS One (2012) 0.79
Gene function analysis by artificial microRNAs in Physcomitrella patens. Methods Mol Biol (2011) 0.78
Biosynthesis of allene oxides in Physcomitrella patens. BMC Plant Biol (2012) 0.77
MicroRNA-mediated establishment of transcription factor gradients controlling developmental phase transitions. Plant Signal Behav (2011) 0.75
Ca2+ signatures: the role of Ca2+-ATPases. Plant Signal Behav (2009) 0.75
Expression of artificial microRNAs in Physcomitrella patens. Methods Mol Biol (2012) 0.75