Published in BMC Genomics on July 06, 2006
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet (2009) 8.51
Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev (2008) 3.80
Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol (2010) 2.96
Molecular pathogenesis of Shigella spp.: controlling host cell signaling, invasion, and death by type III secretion. Clin Microbiol Rev (2008) 2.86
Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res (2008) 2.72
Clinical trials of Shigella vaccines: two steps forward and one step back on a long, hard road. Nat Rev Microbiol (2007) 2.11
Derivation of Escherichia coli O157:H7 from its O55:H7 precursor. PLoS One (2010) 1.90
A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation. BMC Infect Dis (2009) 1.83
Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri. J Clin Microbiol (2009) 1.71
The emergence and fate of horizontally acquired genes in Escherichia coli. PLoS Comput Biol (2008) 1.41
Inferring genomic flux in bacteria. Genome Res (2008) 1.25
Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups. Microbiology (2010) 1.21
A novel glucosyltransferase involved in O-antigen modification of Shigella flexneri serotype 1c. J Bacteriol (2009) 1.14
IS4 family goes genomic. BMC Evol Biol (2008) 1.09
Multilocus sequence typing analysis of Shigella flexneri isolates collected in Asian countries. J Med Microbiol (2007) 1.05
Genome sequence of Shigella flexneri serotype 5a strain M90T Sm. J Bacteriol (2012) 0.95
Gene decay in Shigella as an incipient stage of host-adaptation. PLoS One (2011) 0.93
Genetic structure of the nadA and nadB antivirulence loci in Shigella spp. J Bacteriol (2007) 0.92
Chromosomal rearrangements in Salmonella enterica serovar Typhi strains isolated from asymptomatic human carriers. MBio (2011) 0.89
Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant Shigella flexneri clone in China. J Clin Microbiol (2014) 0.86
Identification of a novel prophage regulator in Escherichia coli controlling the expression of type III secretion. Mol Microbiol (2011) 0.83
Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli-Shigella genetic exchange communities. Open Biol (2012) 0.82
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis. BMC Genomics (2010) 0.81
Mechanism of Escherichia coli resistance to Pyrrhocoricin. Antimicrob Agents Chemother (2014) 0.80
An integrated approach for finding overlooked genes in Shigella. PLoS One (2011) 0.79
The genome of Shigella dysenteriae strain Sd1617 comparison to representative strains in evaluating pathogenesis. FEMS Microbiol Lett (2015) 0.78
Distinct mutations led to inactivation of type 1 fimbriae expression in Shigella spp. PLoS One (2015) 0.77
SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes. J Bacteriol (2014) 0.76
Shigella flexneri serotype 1c derived from serotype 1a by acquisition of gtrIC gene cluster via a bacteriophage. BMC Microbiol (2016) 0.75
Characterization of two polyvalent phages infecting Enterobacteriaceae. Sci Rep (2017) 0.75
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res (1998) 96.63
The KEGG resource for deciphering the genome. Nucleic Acids Res (2004) 53.05
The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res (2000) 49.22
The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell (1987) 46.35
Microbial gene identification using interpolated Markov models. Nucleic Acids Res (1998) 20.26
Living with water stress: evolution of osmolyte systems. Science (1982) 17.27
Involvement of a plasmid in the invasive ability of Shigella flexneri. Infect Immun (1982) 13.55
Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ (1999) 8.93
Genome sequence of Yersinia pestis KIM. J Bacteriol (2002) 7.14
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol (2003) 5.45
Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol (2000) 5.40
Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect Immun (2003) 5.11
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc Natl Acad Sci U S A (2000) 4.96
Genetic basis of virulence in Shigella species. Microbiol Rev (1991) 4.94
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res (2002) 4.92
Choline-glycine betaine pathway confers a high level of osmotic tolerance in Escherichia coli. J Bacteriol (1986) 4.82
Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev (2004) 3.77
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res (2005) 3.56
The virulence plasmid pWR100 and the repertoire of proteins secreted by the type III secretion apparatus of Shigella flexneri. Mol Microbiol (2000) 3.13
Characterization of pic, a secreted protease of Shigella flexneri and enteroaggregative Escherichia coli. Infect Immun (1999) 2.78
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements. Genetics (2000) 2.75
GenomeComp: a visualization tool for microbial genome comparison. J Microbiol Methods (2003) 2.62
Genome degradation is an ongoing process in Rickettsia. Mol Biol Evol (1999) 2.44
Complete DNA sequence and analysis of the large virulence plasmid of Shigella flexneri. Infect Immun (2001) 1.77
IS1-mediated intramolecular rearrangements: formation of excised transposon circles and replicative deletions. EMBO J (1995) 1.76
The selC-associated SHI-2 pathogenicity island of Shigella flexneri. Mol Microbiol (1999) 1.74
Mechanism of bacteriophage SfII-mediated serotype conversion in Shigella flexneri. Mol Microbiol (1997) 1.65
Gene location affects expression level in Salmonella typhimurium. J Bacteriol (1987) 1.57
The sigA gene which is borne on the she pathogenicity island of Shigella flexneri 2a encodes an exported cytopathic protease involved in intestinal fluid accumulation. Infect Immun (2000) 1.55
The aerobactin iron transport system genes in Shigella flexneri are present within a pathogenicity island. Mol Microbiol (1999) 1.51
Identification of two Shigella flexneri chromosomal loci involved in intercellular spreading. Infect Immun (1998) 1.46
Glycine betaine uptake after hyperosmotic shift in Corynebacterium glutamicum. J Bacteriol (1995) 1.38
Transposable elements and adaptation of host bacteria. Genetica (1994) 1.36
Molecular characterization of the genes involved in O-antigen modification, attachment, integration and excision in Shigella flexneri bacteriophage SfV. Gene (1997) 1.30
Diversity of genome structure in Salmonella enterica serovar Typhi populations. J Bacteriol (2005) 1.15
Regulation of virulence gene expression in Shigella flexneri, a facultative intracellular pathogen. Int J Med Microbiol (2001) 1.13
Glycosyltransferases encoded by viruses. J Gen Virol (2004) 1.09
Slaying the Hydra all at once or head by head? Nat Med (1998) 1.08
dksA is required for intercellular spread of Shigella flexneri via an RpoS-independent mechanism. Infect Immun (2001) 1.07
Regulated site-specific recombination of the she pathogenicity island of Shigella flexneri. Mol Microbiol (2004) 1.01
A provisional chromosome map of Shigella and the regions related to pathogenicity. Acta Microbiol Acad Sci Hung (1982) 0.99
Shigella flexneri type-specific antigen V: cloning, sequencing and characterization of the glucosyl transferase gene of temperate bacteriophage SfV. Gene (1997) 0.97
Distribution and structural variation of the she pathogenicity island in enteric bacterial pathogens. J Med Microbiol (2001) 0.93
A rare 920-kilobase chromosomal inversion mediated by IS1 transposition causes constitutive expression of the yiaK-S operon for carbohydrate utilization in Escherichia coli. J Biol Chem (1998) 0.89
Pathogenic effects of Opolysaccharide from Shigella flexneri strain. World J Gastroenterol (1999) 0.88
Pathogenicity islands of Shigella. Curr Top Microbiol Immunol (2002) 0.86
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med (2013) 24.88
Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. Nat Genet (2010) 23.08
Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature (2010) 20.01
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
Evolutionary and biomedical insights from the rhesus macaque genome. Science (2007) 16.21
WEGO: a web tool for plotting GO annotations. Nucleic Acids Res (2006) 13.06
Five years of GWAS discovery. Am J Hum Genet (2012) 12.97
Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat Genet (2007) 12.62
Transformation from committed progenitor to leukaemia stem cell initiated by MLL-AF9. Nature (2006) 11.90
Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1. Science (2011) 11.12
Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes. Nat Immunol (2008) 10.42
MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell (2007) 9.33
Effect of aciclovir on HIV-1 acquisition in herpes simplex virus 2 seropositive women and men who have sex with men: a randomised, double-blind, placebo-controlled trial. Lancet (2008) 9.17
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat Biotechnol (2010) 9.01
Changes in diabetes-related complications in the United States, 1990-2010. N Engl J Med (2014) 8.73
MicroRNA expression signature and antisense-mediated depletion reveal an essential role of MicroRNA in vascular neointimal lesion formation. Circ Res (2007) 7.98
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution. Nat Genet (2010) 7.94
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
Capture of authentic embryonic stem cells from rat blastocysts. Cell (2008) 6.60
Diminished hepatic response to fasting/refeeding and liver X receptor agonists in mice with selective deficiency of sterol regulatory element-binding protein-1c. J Biol Chem (2002) 5.89
Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs. Nat Genet (2012) 5.78
Klf4 reverts developmentally programmed restriction of ground state pluripotency. Development (2009) 5.49
Effect of iodine intake on thyroid diseases in China. N Engl J Med (2006) 5.46
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Self-monitoring in weight loss: a systematic review of the literature. J Am Diet Assoc (2011) 5.12
Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature (2003) 5.04
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res (2002) 4.92
VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res (2005) 4.77
GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Science (2013) 4.71
AlleleSeq: analysis of allele-specific expression and binding in a network framework. Mol Syst Biol (2011) 4.71
MicroRNAs are aberrantly expressed in hypertrophic heart: do they play a role in cardiac hypertrophy? Am J Pathol (2007) 4.65
The E3 ligase TRAF6 regulates Akt ubiquitination and activation. Science (2009) 4.63
The genetic interpretation of area under the ROC curve in genomic profiling. PLoS Genet (2010) 4.58
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res (2011) 4.36
MicroRNA-145, a novel smooth muscle cell phenotypic marker and modulator, controls vascular neointimal lesion formation. Circ Res (2009) 4.25
Probable limited person-to-person transmission of highly pathogenic avian influenza A (H5N1) virus in China. Lancet (2008) 4.17
Priming of naive T cells inside tumors leads to eradication of established tumors. Nat Immunol (2004) 3.95
Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol (2003) 3.86
Genetic characteristics of human enterovirus 71 and coxsackievirus A16 circulating from 1999 to 2004 in Shenzhen, People's Republic of China. J Clin Microbiol (2005) 3.82
Oocyte-specific deletion of Pten causes premature activation of the primordial follicle pool. Science (2008) 3.80
Glycolytic enzymes can modulate cellular life span. Cancer Res (2005) 3.78
Phosphatidylinositol 4 phosphate regulates targeting of clathrin adaptor AP-1 complexes to the Golgi. Cell (2003) 3.75
Profiling the effects of isocitrate dehydrogenase 1 and 2 mutations on the cellular metabolome. Proc Natl Acad Sci U S A (2011) 3.66
Large-gap quantum spin Hall insulators in tin films. Phys Rev Lett (2013) 3.60
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet (2010) 3.56
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res (2005) 3.56
An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance. Clin Cancer Res (2012) 3.48
A commentary on 'common SNPs explain a large proportion of the heritability for human height' by Yang et al. (2010). Twin Res Hum Genet (2010) 3.37
A necessary role of miR-221 and miR-222 in vascular smooth muscle cell proliferation and neointimal hyperplasia. Circ Res (2009) 3.37
Alterations in conserved Kir channel-PIP2 interactions underlie channelopathies. Neuron (2002) 3.37
MicroRNA expression signature and the role of microRNA-21 in the early phase of acute myocardial infarction. J Biol Chem (2009) 3.34
R gene expression induced by a type-III effector triggers disease resistance in rice. Nature (2005) 3.25
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. Nat Genet (2013) 3.25
Biological features of novel avian influenza A (H7N9) virus. Nature (2013) 3.24
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci U S A (2002) 3.19
MicroRNA-21 protects against the H(2)O(2)-induced injury on cardiac myocytes via its target gene PDCD4. J Mol Cell Cardiol (2009) 3.19
Sofosbuvir and Velpatasvir for HCV Genotype 2 and 3 Infection. N Engl J Med (2015) 3.13
Skp2 targeting suppresses tumorigenesis by Arf-p53-independent cellular senescence. Nature (2010) 3.09
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res (2007) 3.07
Pitfalls of predicting complex traits from SNPs. Nat Rev Genet (2013) 3.06
HIV/STD risk behaviors and perceptions among rural-to-urban migrants in China. AIDS Educ Prev (2004) 3.04