Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes.

PubWeight™: 1.25‹?› | Rank: Top 10%

🔗 View Article (PMC 2817478)

Published in Nucleic Acids Res on November 26, 2009

Authors

Jesper Sejrup Nielsen1, Lisbeth Kristensen Lei, Tine Ebersbach, Anders Steno Olsen, Janne Kudsk Klitgaard, Poul Valentin-Hansen, Birgitte Haahr Kallipolitis

Author Affiliations

1: Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

Articles citing this

Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94

Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68

Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol (2011) 3.75

Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res (2010) 1.99

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Res (2011) 1.30

Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis. Nucleic Acids Res (2010) 1.26

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange. Nucleic Acids Res (2013) 1.19

Dual-function RNA regulators in bacteria. Biochimie (2011) 1.12

Transcriptomic and phenotypic analyses identify coregulated, overlapping regulons among PrfA, CtsR, HrcA, and the alternative sigma factors sigmaB, sigmaC, sigmaH, and sigmaL in Listeria monocytogenes. Appl Environ Microbiol (2010) 1.11

Small RNA functions in carbon metabolism and virulence of enteric pathogens. Front Cell Infect Microbiol (2014) 1.08

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res (2011) 1.05

Initiation of mRNA decay in bacteria. Cell Mol Life Sci (2013) 1.04

A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes. PLoS One (2011) 1.00

Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res (2011) 1.00

Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus. BMC Genomics (2010) 0.94

Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile. J Bacteriol (2014) 0.93

Association of RNAs with Bacillus subtilis Hfq. PLoS One (2013) 0.92

Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA. Nucleic Acids Res (2013) 0.91

Small regulatory RNAs from low-GC Gram-positive bacteria. RNA Biol (2014) 0.91

Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583. PLoS One (2011) 0.89

Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract. Nucleic Acids Res (2012) 0.88

A multicopy sRNA of Listeria monocytogenes regulates expression of the virulence adhesin LapB. Nucleic Acids Res (2014) 0.88

Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes. RNA (2014) 0.86

Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq. RNA (2012) 0.86

When ribonucleases come into play in pathogens: a survey of gram-positive bacteria. Int J Microbiol (2012) 0.85

Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA (2014) 0.85

RNA regulators of host immunity and pathogen adaptive responses in the oral cavity. Microbes Infect (2015) 0.84

RNA-mediated regulation in Gram-positive pathogens: an overview punctuated with examples from the group A Streptococcus. Mol Microbiol (2014) 0.82

Impact of Hfq on the Bacillus subtilis transcriptome. PLoS One (2014) 0.81

Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family. Protein Sci (2015) 0.80

Tracking the Elusive Function of Bacillus subtilis Hfq. PLoS One (2015) 0.80

Small regulatory RNAs in Streptococcus pneumoniae: discovery and biological functions. Front Genet (2015) 0.80

The multicopy sRNA LhrC controls expression of the oligopeptide-binding protein OppA in Listeria monocytogenes. RNA Biol (2015) 0.79

Regulatory RNAs in the Less Studied Streptococcal Species: From Nomenclature to Identification. Front Microbiol (2016) 0.79

In Vitro Characterization of the Type I Toxin-Antitoxin System bsrE/SR5 from Bacillus subtilis. J Biol Chem (2015) 0.77

A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition. Nucleic Acids Res (2015) 0.77

Chitinase expression in Listeria monocytogenes is positively regulated by the Agr system. PLoS One (2014) 0.77

Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles. RNA Biol (2016) 0.76

The Mechanisms of Virulence Regulation by Small Noncoding RNAs in Low GC Gram-Positive Pathogens. Int J Mol Sci (2015) 0.75

sRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation. Elife (2017) 0.75

An in vivo reporter assay for sRNA-directed gene control in Gram-positive bacteria: identifying a novel sRNA target in Staphylococcus aureus. Nucleic Acids Res (2017) 0.75

Acidic C-terminal domains autoregulate the RNA chaperone Hfq. Elife (2017) 0.75

Articles cited by this

Unique features in the ribosome binding site sequence of the gram-positive Staphylococcus aureus beta-lactamase gene. J Biol Chem (1981) 11.17

Regulatory RNAs in bacteria. Cell (2009) 9.57

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A (2002) 7.99

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev (2003) 7.33

The Listeria transcriptional landscape from saprophytism to virulence. Nature (2009) 5.88

The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol (2004) 5.72

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs. Mol Cell (2002) 5.69

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell (2002) 5.26

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23

Coordinate regulation of virulence genes in Listeria monocytogenes requires the product of the prfA gene. J Bacteriol (1992) 5.19

Controlling mRNA stability and translation with small, noncoding RNAs. Curr Opin Microbiol (2004) 5.11

The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol (2004) 4.88

Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol (1994) 4.34

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J (2002) 3.88

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator. EMBO J (2004) 3.75

RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. Genes Dev (2005) 3.66

Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol (2007) 3.55

Hfq structure, function and ligand binding. Curr Opin Microbiol (2007) 3.49

The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family. Mol Microbiol (1998) 3.26

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol (2006) 3.07

Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J (2005) 2.95

Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr Opin Microbiol (2007) 2.93

Target prediction for small, noncoding RNAs in bacteria. Nucleic Acids Res (2006) 2.90

Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell (2008) 2.88

Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism. Genes Dev (2007) 2.86

Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat Struct Mol Biol (2004) 2.79

Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res (2007) 2.75

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq. Mol Microbiol (2006) 2.69

A broad-host-range mobilizable shuttle vector for the construction of transcriptional fusions to beta-galactosidase in gram-positive bacteria. FEMS Microbiol Lett (1997) 2.65

Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA (2003) 2.57

Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad Sci U S A (2005) 2.55

Small RNAs controlling iron metabolism. Curr Opin Microbiol (2007) 2.54

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44

Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol Microbiol (2003) 2.42

The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence. J Bacteriol (2004) 2.34

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA. RNA (2008) 2.27

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol (2009) 2.25

Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol (2005) 2.25

Maturation and degradation of RNA in bacteria. Curr Opin Microbiol (2007) 2.10

Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res (2002) 2.01

The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res (2003) 2.00

Identification of small Hfq-binding RNAs in Listeria monocytogenes. RNA (2006) 2.00

Listeria monocytogenes, a unique model in infection biology: an overview. Microbes Infect (2008) 1.98

Inhibition of rot translation by RNAIII, a key feature of agr function. Mol Microbiol (2006) 1.90

Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli. Genes Dev (2005) 1.82

No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus. BMC Microbiol (2007) 1.79

Regulation of the deo operon in Escherichia coli: the double negative control of the deo operon by the cytR and deoR repressors in a DNA directed in vitro system. Mol Gen Genet (1978) 1.75

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc Natl Acad Sci U S A (2008) 1.74

Dissecting RNA chaperone activity. RNA (2007) 1.55

The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. Res Microbiol (2009) 1.46

Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites. Biochemistry (2006) 1.44

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol (2009) 1.42

Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis. J Bacteriol (2006) 1.41

The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism. Mol Microbiol (2006) 1.38

In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA. Nucleic Acids Res (2007) 1.36

Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes. J Bacteriol (2008) 1.32

Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome. J Mol Biol (2008) 1.29

Functional replacement of the Escherichia coli hfq gene by the homologue of Pseudomonas aeruginosa. Microbiology (2002) 1.24

On the facultative requirement of the bacterial RNA chaperone, Hfq. Trends Microbiol (2009) 1.21

A conserved small RNA promotes silencing of the outer membrane protein YbfM. Mol Microbiol (2009) 1.17

An Hfq-like protein in archaea: crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. RNA (2007) 1.07

CodY activates transcription of a small RNA in Bacillus subtilis. J Bacteriol (2009) 1.00

Overproduction of the outer-membrane proteins FepA and FhuE responsible for iron transport in Escherichia coli hfq::cat mutant. Biochem Biophys Res Commun (1999) 1.00

Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. Protein Sci (2007) 0.97

Functional effects of variants of the RNA chaperone Hfq. Biochem Biophys Res Commun (2004) 0.96

Analyses of mRNA destabilization and translational inhibition mediated by Hfq-binding small RNAs. Methods Enzymol (2008) 0.87

Articles by these authors

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol Cell (2002) 5.26

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J (2002) 3.88

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci U S A (2009) 3.04

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev (2002) 2.75

Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. Mol Microbiol (2005) 2.25

Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins. J Mol Biol (2006) 2.18

Switching off small RNA regulation with trap-mRNA. Mol Microbiol (2009) 2.17

Identification of small Hfq-binding RNAs in Listeria monocytogenes. RNA (2006) 2.00

Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case. J Mol Biol (2008) 1.39

Identification of a sigma B-dependent small noncoding RNA in Listeria monocytogenes. J Bacteriol (2008) 1.32

Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli. Mol Microbiol (2012) 1.24

Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli. J Biol Chem (2010) 1.19

A conserved small RNA promotes silencing of the outer membrane protein YbfM. Mol Microbiol (2009) 1.17

Dual function of the McaS small RNA in controlling biofilm formation. Genes Dev (2013) 1.13

An Hfq-like protein in archaea: crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. RNA (2007) 1.07

C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation. J Mol Biol (2010) 1.04

A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). BMC Genomics (2012) 1.01

The cryptic adenine deaminase gene of Escherichia coli. Silencing by the nucleoid-associated DNA-binding protein, H-NS, and activation by insertion elements. J Biol Chem (2002) 0.97

Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties. FEBS J (2009) 0.96

Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract. Nucleic Acids Res (2012) 0.88

A role for the interdomain linker region of the Escherichia coli CytR regulator in repression complex formation. J Mol Biol (2004) 0.84

Modulating the bacterial surface with small RNAs: a new twist on PhoP/Q-mediated lipopolysaccharide modification. Mol Microbiol (2009) 0.81

A novel indirect sequence readout component in the E. coli cyclic AMP receptor protein operator. ACS Chem Biol (2014) 0.75