Published in Mol Cell Biol on August 28, 2006
Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae. Biochim Biophys Acta (2007) 3.07
Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol (2008) 2.73
Control and signal processing by transcriptional interference. Mol Syst Biol (2009) 0.94
An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae. Genes Dev (2011) 0.86
Ribosomal footprints on a transcriptome landscape. Genome Biol (2009) 0.83
Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast. RNA (2010) 0.79
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics (1989) 105.30
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell (1998) 62.20
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast (1998) 48.29
Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (2002) 43.52
Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell (2000) 36.09
Genome-wide location and function of DNA binding proteins. Science (2000) 31.25
Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature (2003) 29.16
Getting started with yeast. Methods Enzymol (1991) 26.67
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast (1998) 23.00
Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Methods Enzymol (1991) 16.88
Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science (2003) 16.49
Control of translation and mRNA degradation by miRNAs and siRNAs. Genes Dev (2006) 15.20
Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol (2002) 13.78
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science (2000) 13.20
Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem (1991) 11.92
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell (2005) 10.68
Identification and distinct regulation of yeast TATA box-containing genes. Cell (2004) 6.27
Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature (1999) 6.20
Transcription elongation factors repress transcription initiation from cryptic sites. Science (2003) 5.18
Upstream open reading frames as regulators of mRNA translation. Mol Cell Biol (2000) 4.99
The relationship between the "TATA" sequence and transcription initiation sites at the HIS4 gene of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (1985) 4.87
Promoter occlusion: transcription through a promoter may inhibit its activity. Cell (1982) 4.43
Regulation of mRNA translation by 5'- and 3'-UTR-binding factors. Trends Biochem Sci (2003) 3.92
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response. Cell (2001) 3.45
The yeast STE12 protein binds to the DNA sequence mediating pheromone induction. Proc Natl Acad Sci U S A (1989) 3.01
Nucleotide sequence of the yeast SUC2 gene for invertase. Nucleic Acids Res (1983) 2.86
Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates. Cell (2001) 2.76
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. Genes Dev (2005) 2.64
Mapping the 5' and 3' ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res (1993) 2.48
Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch. Nature (1989) 2.39
Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci (2005) 2.33
Pheromone response, mating and cell biology. Curr Opin Microbiol (2000) 2.32
Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach. Mol Gen Genet (1999) 2.26
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Mol Cell Proteomics (2004) 2.22
Role of negative regulation in promoter specificity of the homologous transcriptional activators Ace2p and Swi5p. Mol Cell Biol (1996) 2.20
Overlapping and distinct roles of the duplicated yeast transcription factors Ace2p and Swi5p. Mol Microbiol (2001) 1.82
A Cdc24p-Far1p-Gbetagamma protein complex required for yeast orientation during mating. J Cell Biol (1999) 1.80
The relationship between mRNA stability and length in Saccharomyces cerevisiae. Nucleic Acids Res (1986) 1.73
Processing the message: structural insights into capping and decapping mRNA. Curr Opin Struct Biol (2005) 1.69
Comprehensive proteomic analysis of Saccharomyces cerevisiae cell walls: identification of proteins covalently attached via glycosylphosphatidylinositol remnants or mild alkali-sensitive linkages. J Biol Chem (2005) 1.57
Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence. J Biol Chem (2001) 1.50
Properties of the DNA-binding domain of the Saccharomyces cerevisiae STE12 protein. Mol Cell Biol (1991) 1.44
ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2003) 1.38
Repression: targeting the heart of the matter. Cell (1999) 1.36
The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders. Genome Biol (2006) 1.36
The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2. EMBO J (2004) 1.26
Recruitment of Tup1-Ssn6 by yeast hypoxic genes and chromatin-independent exclusion of TATA binding protein. Eukaryot Cell (2003) 1.26
Yeast LEU4 encodes mitochondrial and nonmitochondrial forms of alpha-isopropylmalate synthase. J Biol Chem (1988) 1.22
Structure comparison of human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein P14a indicates a functional link between the human immune system and a plant defense system. Proc Natl Acad Sci U S A (1998) 1.21
Plant pathogenesis-related proteins: molecular mechanisms of gene expression and protein function. J Biochem (1999) 1.20
Identification and characterization of a novel human plant pathogenesis-related protein that localizes to lipid-enriched microdomains in the Golgi complex. J Cell Sci (2002) 1.18
Subcellular locations of MOD5 proteins: mapping of sequences sufficient for targeting to mitochondria and demonstration that mitochondrial and nuclear isoforms commingle in the cytosol. Mol Cell Biol (1994) 1.10
The two forms of karyogamy transcription factor Kar4p are regulated by differential initiation of transcription, translation, and protein turnover. Mol Cell Biol (1999) 0.97
Identification of different daughter and parent subpopulations in an asynchronously growing Saccharomyces cerevisiae population. Res Microbiol (1998) 0.87
A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation. Cell Stem Cell (2008) 3.18
Cell-type-specific isolation of ribosome-associated mRNA from complex tissues. Proc Natl Acad Sci U S A (2009) 2.97
Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone. Mol Cell Proteomics (2004) 2.22
The transcriptome and its translation during recovery from cell cycle arrest in Saccharomyces cerevisiae. Mol Cell Proteomics (2003) 1.45
The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders. Genome Biol (2006) 1.36
The two upstream open reading frames of oncogene mdm2 have different translational regulatory properties. J Biol Chem (2003) 1.19
Regulated translation termination at the upstream open reading frame in s-adenosylmethionine decarboxylase mRNA. J Biol Chem (2001) 1.18
PSGL-1 and mTOR regulate translation of ROCK-1 and physiological functions of macrophages. EMBO J (2007) 1.06
Silencing the transcriptome's dark matter: mechanisms for suppressing translation of intergenic transcripts. Mol Cell (2006) 0.95
Translation initiation: a regulatory role for poly(A) tracts in front of the AUG codon in Saccharomyces cerevisiae. Genetics (2011) 0.92
FMR1 transcript isoforms: association with polyribosomes; regional and developmental expression in mouse brain. PLoS One (2013) 0.91
Quantitative proteomic analysis of the budding yeast cell cycle using acid-cleavable isotope-coded affinity tag reagents. Proteomics (2006) 0.86
RNA-binding protein IGF2BP2/IMP2 is required for laminin-β2 mRNA translation and is modulated by glucose concentration. Am J Physiol Renal Physiol (2012) 0.84
Dynamic model of the process of protein synthesis in eukaryotic cells. Bull Math Biol (2006) 0.82
Reductions in laminin beta2 mRNA translation are responsible for impaired IGFBP-5-mediated mesangial cell migration in the presence of high glucose. Am J Physiol Renal Physiol (2009) 0.79