Published in BMC Genomics on December 09, 2014
What's in a genome? The C-value enigma and the evolution of eukaryotic genome content. Philos Trans R Soc Lond B Biol Sci (2015) 0.91
A large-scale chromosome-specific SNP discovery guideline. Funct Integr Genomics (2016) 0.83
Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research. BMC Genomics (2015) 0.82
Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides. Sci Rep (2015) 0.82
Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii. Front Plant Sci (2016) 0.81
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements. BMC Genomics (2015) 0.81
The grain Hardness locus characterized in a diverse wheat panel (Triticum aestivum L.) adapted to the central part of the Fertile Crescent: genetic diversity, haplotype structure, and phylogeny. Mol Genet Genomics (2016) 0.76
DNApod: DNA polymorphism annotation database from next-generation sequence read archives. PLoS One (2017) 0.75
Wheat Landrace Genome Diversity. Genetics (2017) 0.75
Transcriptome-based SNP discovery by GBS and the construction of a genetic map for olive. Funct Integr Genomics (2017) 0.75
High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis. Funct Integr Genomics (2017) 0.75
Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02
BLAST+: architecture and applications. BMC Bioinformatics (2009) 36.53
Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41
Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res (2011) 18.50
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature (2010) 9.52
A physical, genetic and functional sequence assembly of the barley genome. Nature (2012) 7.25
Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics (2008) 7.12
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature (2012) 5.67
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science (2014) 4.80
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res (2004) 4.31
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Genome plasticity a key factor in the success of polyploid wheat under domestication. Science (2007) 3.69
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell (2011) 3.03
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell (2010) 2.45
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Ancient hybridizations among the ancestral genomes of bread wheat. Science (2014) 1.97
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics (2004) 1.94
Structural and functional partitioning of bread wheat chromosome 3B. Science (2014) 1.94
Puroindolines: the molecular genetic basis of wheat grain hardness. Plant Mol Biol (2002) 1.91
Crop genome sequencing: lessons and rationales. Trends Plant Sci (2011) 1.77
Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.). Genetics (2000) 1.72
Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J (2006) 1.70
Molecular mapping of wheat: major genes and rearrangements in homoeologous groups 4, 5, and 7. Genetics (1995) 1.67
Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J (2011) 1.60
Gene content and virtual gene order of barley chromosome 1H. Plant Physiol (2009) 1.53
Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley. BMC Genomics (2008) 1.45
Patching gaps in plant genomes results in gene movement and erosion of colinearity. Genome Res (2010) 1.36
A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics (2004) 1.33
Development of chromosome-specific BAC resources for genomics of bread wheat. Cytogenet Genome Res (2010) 1.28
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26
Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family. Plant Mol Biol (2007) 1.24
Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels. Mol Syst Biol (2012) 1.19
Flow karyotyping and chromosome sorting in bread wheat ( Triticum aestivum L.). Theor Appl Genet (2002) 1.14
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor Appl Genet (2011) 1.09
First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One (2011) 1.09
Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat. BMC Genomics (2012) 1.05
Comparative visualization of genetic and physical maps with Strudel. Bioinformatics (2011) 1.01
A single nucleotide polymorphism at the Vrn-D1 promoter region in common wheat is associated with vernalization response. Theor Appl Genet (2012) 0.97
Vrn-D4 is a vernalization gene located on the centromeric region of chromosome 5D in hexaploid wheat. Theor Appl Genet (2009) 0.94
Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Funct Integr Genomics (2011) 0.93
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res (2013) 0.89
Follow the leader: preference for specific amino acids directly following the initial methionine in proteins of different organisms. Genomics Proteomics Bioinformatics (2010) 0.78
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell (2011) 3.03
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content. Plant J (2011) 1.60
Chromosome-based genomics in the cereals. Chromosome Res (2007) 1.59
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. Planta (2010) 1.47
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nat Genet (2013) 1.38
Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc Natl Acad Sci U S A (2012) 1.37
Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J (2004) 1.31
Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. Plant J (2013) 1.26
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol J (2011) 1.21
Plant centromeric retrotransposons: a structural and cytogenetic perspective. Mob DNA (2011) 1.21
The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One (2011) 1.12
Chromosomes in the flow to simplify genome analysis. Funct Integr Genomics (2012) 1.09
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation. Theor Appl Genet (2011) 1.09
First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PLoS One (2011) 1.09
Dissection of the nuclear genome of barley by chromosome flow sorting. Theor Appl Genet (2006) 1.07
Advanced resources for plant genomics: a BAC library specific for the short arm of wheat chromosome 1B. Plant J (2006) 1.03
Flow cytogenetics and plant genome mapping. Chromosome Res (2004) 1.01
BAC libraries from wheat chromosome 7D: efficient tool for positional cloning of aphid resistance genes. J Biomed Biotechnol (2010) 1.00
Reticulate evolution of the rye genome. Plant Cell (2013) 1.00
SNP Discovery for mapping alien introgressions in wheat. BMC Genomics (2014) 0.96
Functional features of a single chromosome arm in wheat (1AL) determined from its structure. Funct Integr Genomics (2011) 0.93
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat. Genome Biol (2013) 0.93
Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat. BMC Plant Biol (2012) 0.92
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnol J (2014) 0.92
Construction of a subgenomic BAC library specific for chromosomes 1D, 4D and 6D of hexaploid wheat. Theor Appl Genet (2004) 0.92
Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat. BMC Plant Biol (2012) 0.91
A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS). BMC Genomics (2008) 0.91
Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A. Plant J (2014) 0.91
A physical map of the short arm of wheat chromosome 1A. PLoS One (2013) 0.91
The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution. Genome Biol (2013) 0.91
A multi gene sequence-based phylogeny of the Musaceae (banana) family. BMC Evol Biol (2011) 0.91
A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome. Funct Integr Genomics (2011) 0.90
Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii. Theor Appl Genet (2014) 0.90
A platform for efficient genotyping in Musa using microsatellite markers. AoB Plants (2011) 0.90
Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One (2013) 0.90
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res (2013) 0.89
Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes. Chromosome Res (2011) 0.89
The drought response displayed by a DRE-binding protein from Triticum dicoccoides. Plant Physiol Biochem (2011) 0.89
Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics (2012) 0.88
Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps. Theor Appl Genet (2010) 0.88
Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers. PLoS One (2013) 0.88
Chromosome isolation by flow sorting in Aegilops umbellulata and Ae. comosa and their allotetraploid hybrids Ae. biuncialis and Ae. geniculata. PLoS One (2011) 0.87
Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A. PLoS One (2013) 0.86
Vaccinia virus protein K7 is a virulence factor that alters the acute immune response to infection. J Gen Virol (2013) 0.86
Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnol J (2013) 0.86
Plant abiotic stress signaling. Plant Signal Behav (2012) 0.86
Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1. PLoS One (2012) 0.84
Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno. Plant Biotechnol J (2012) 0.84
Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.). PLoS One (2013) 0.84
Genetic mapping of DArT markers in the Festuca-Lolium complex and their use in freezing tolerance association analysis. Theor Appl Genet (2011) 0.83
Genomics approaches for crop improvement against abiotic stress. ScientificWorldJournal (2013) 0.82
Genomic constitution of Festuca × Lolium hybrids revealed by the DArTFest array. Theor Appl Genet (2010) 0.82
Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of wheat. Theor Appl Genet (2013) 0.81
Proteomic analysis of barley cell nuclei purified by flow sorting. Cytogenet Genome Res (2014) 0.80
A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus. Funct Integr Genomics (2013) 0.80
Dissection of barley chromosomes 1H and 6H by the gametocidal system. Genes Genet Syst (2014) 0.80
Flow sorting and sequencing meadow fescue chromosome 4F. Plant Physiol (2013) 0.79
Genomic diversity in two related plant species with and without sex chromosomes--Silene latifolia and S. vulgaris. PLoS One (2012) 0.79
Variation in genome composition of blue-aleurone wheat. Theor Appl Genet (2014) 0.78
Flow cytometric chromosome sorting in plants: the next generation. Methods (2012) 0.78
Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus. BMC Plant Biol (2014) 0.78
Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat. BMC Genomics (2013) 0.78
Fine mapping, phenotypic characterization and validation of non-race-specific resistance to powdery mildew in a wheat-Triticum militinae introgression line. Theor Appl Genet (2012) 0.77
Molecular Cytogenetic Mapping of Satellite DNA Sequences in Aegilops geniculata and Wheat. Cytogenet Genome Res (2016) 0.76
Chromosome analysis and sorting using flow cytometry. Methods Mol Biol (2011) 0.76
Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.). Theor Appl Genet (2013) 0.76
Hyperexpansion of wheat chromosomes sorted by flow cytometry. Genes Genet Syst (2014) 0.75
Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene. Theor Appl Genet (2015) 0.75
Physical Map of the Short Arm of Bread Wheat Chromosome 3D. Plant Genome (2017) 0.75