Published in Biochemistry on December 05, 2006
Oxidative stress resistance in Deinococcus radiodurans. Microbiol Mol Biol Rev (2011) 2.43
SSB protein diffusion on single-stranded DNA stimulates RecA filament formation. Nature (2009) 2.33
Binding of the dimeric Deinococcus radiodurans single-stranded DNA binding protein to single-stranded DNA. Biochemistry (2010) 0.98
Biophysical analysis of Thermus aquaticus single-stranded DNA binding protein. Biophys J (2007) 0.94
The process of displacing the single-stranded DNA-binding protein from single-stranded DNA by RecO and RecR proteins. Nucleic Acids Res (2007) 0.94
Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach. Nucleic Acids Res (2015) 0.84
A mechanism for single-stranded DNA-binding protein (SSB) displacement from single-stranded DNA upon SSB-RecO interaction. J Biol Chem (2010) 0.83
Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA. Nucleic Acids Res (2013) 0.83
The human mitochondrial single-stranded DNA-binding protein displays distinct kinetics and thermodynamics of DNA binding and exchange. J Biol Chem (2017) 0.82
Structure of the S100A4/myosin-IIA complex. BMC Struct Biol (2013) 0.80
Helicase processivity and not the unwinding velocity exhibits universal increase with force. Biophys J (2015) 0.76
Functional roles of N-terminal and C-terminal domains in the overall activity of a novel single-stranded DNA binding protein of Deinococcus radiodurans. FEBS Open Bio (2015) 0.75
Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature (2002) 5.13
Repetitive shuttling of a motor protein on DNA. Nature (2005) 3.82
Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. Biophys J (2004) 3.69
SSB as an organizer/mobilizer of genome maintenance complexes. Crit Rev Biochem Mol Biol (2008) 3.19
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks. Annu Rev Biochem (2001) 3.03
Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA. J Mol Biol (2004) 2.86
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc Natl Acad Sci U S A (2002) 2.50
DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes. J Mol Biol (2004) 2.40
SSB protein diffusion on single-stranded DNA stimulates RecA filament formation. Nature (2009) 2.33
A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro. J Mol Biol (2003) 2.26
PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps. Cell (2010) 2.10
A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA. Mol Cell (2007) 2.00
Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain. Proc Natl Acad Sci U S A (2005) 1.95
Srs2 disassembles Rad51 filaments by a protein-protein interaction triggering ATP turnover and dissociation of Rad51 from DNA. Mol Cell (2009) 1.73
Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro. J Biol Chem (2007) 1.71
General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding. Biophys J (2003) 1.70
Dynamic structural rearrangements between DNA binding modes of E. coli SSB protein. J Mol Biol (2007) 1.65
Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol (2009) 1.60
SSB functions as a sliding platform that migrates on DNA via reptation. Cell (2011) 1.53
Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer. Biochemistry (2002) 1.49
ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics. J Mol Biol (2004) 1.45
DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies. J Mol Biol (2002) 1.44
The active form of DNA polymerase V is UmuD'(2)C-RecA-ATP. Nature (2009) 1.43
Single-molecule views of protein movement on single-stranded DNA. Annu Rev Biophys (2012) 1.39
The 2B domain of the Escherichia coli Rep protein is not required for DNA helicase activity. Proc Natl Acad Sci U S A (2002) 1.37
SSB protein limits RecOR binding onto single-stranded DNA. J Biol Chem (2007) 1.35
RecA acts in trans to allow replication of damaged DNA by DNA polymerase V. Nature (2006) 1.34
A RecA filament capping mechanism for RecX protein. Mol Cell (2004) 1.34
Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a mechanism for coping with DNA damage. Proc Natl Acad Sci U S A (2004) 1.33
Microsecond dynamics of protein-DNA interactions: direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer. J Mol Biol (2006) 1.32
The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA. Protein Sci (2004) 1.31
Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1. PLoS Biol (2004) 1.31
Saccharomyces cerevisiae replication protein A binds to single-stranded DNA in multiple salt-dependent modes. Biochemistry (2006) 1.27
Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E.coli RecBCD helicase-catalyzed DNA unwinding. J Mol Biol (2004) 1.27
Organized unidirectional waves of ATP hydrolysis within a RecA filament. PLoS Biol (2005) 1.26
DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation. J Biol Chem (2009) 1.23
Regulation of single-stranded DNA binding by the C termini of Escherichia coli single-stranded DNA-binding (SSB) protein. J Biol Chem (2010) 1.22
Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair. Elife (2014) 1.22
C-terminal deletions of the Escherichia coli RecA protein. Characterization of in vivo and in vitro effects. J Biol Chem (2003) 1.22
Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules. Biochemistry (2002) 1.22
Situational repair of replication forks: roles of RecG and RecA proteins. J Biol Chem (2003) 1.20
The DinI protein stabilizes RecA protein filaments. J Biol Chem (2004) 1.18
The DinI and RecX proteins are competing modulators of RecA function. J Biol Chem (2004) 1.17
DNA polymerase V and RecA protein, a minimal mutasome. Mol Cell (2005) 1.16
The Rad51-dependent pairing of long DNA substrates is stabilized by replication protein A. J Biol Chem (2002) 1.16
5'-Single-stranded/duplex DNA junctions are loading sites for E. coli UvrD translocase. EMBO J (2010) 1.16
Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding. J Mol Biol (2004) 1.16
The C terminus of the Escherichia coli RecA protein modulates the DNA binding competition with single-stranded DNA-binding protein. J Biol Chem (2003) 1.15
Kinetic mechanism for formation of the active, dimeric UvrD helicase-DNA complex. J Biol Chem (2003) 1.13
RecFOR and RecOR as distinct RecA loading pathways. J Biol Chem (2008) 1.11
Escherichia coli RecBC helicase has two translocase activities controlled by a single ATPase motor. Nat Struct Mol Biol (2010) 1.11
Foundational concepts and underlying theories for majors in "biochemistry and molecular biology". Biochem Mol Biol Educ (2013) 1.09
A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V. Crit Rev Biochem Mol Biol (2010) 1.08
Magnesium ion-dependent activation of the RecA protein involves the C terminus. J Biol Chem (2003) 1.08
Direct imaging of single UvrD helicase dynamics on long single-stranded DNA. Nat Commun (2013) 1.08
Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids. Methods (2010) 1.07
The RecA proteins of Deinococcus radiodurans and Escherichia coli promote DNA strand exchange via inverse pathways. Proc Natl Acad Sci U S A (2002) 1.07
Defending science education against intelligent design: a call to action. J Clin Invest (2006) 1.07
RecA Protein from the extremely radioresistant bacterium Deinococcus radiodurans: expression, purification, and characterization. J Bacteriol (2002) 1.06
Energetics of DNA end binding by E.coli RecBC and RecBCD helicases indicate loop formation in the 3'-single-stranded DNA tail. J Mol Biol (2005) 1.06
The RecF protein antagonizes RecX function via direct interaction. Mol Cell (2006) 1.05
Binding specificity of Escherichia coli single-stranded DNA binding protein for the chi subunit of DNA pol III holoenzyme and PriA helicase. Biochemistry (2010) 1.04
Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding. J Mol Biol (2011) 1.04
RecA-mediated SOS induction requires an extended filament conformation but no ATP hydrolysis. Mol Microbiol (2008) 1.04
A DNA pairing-enhanced conformation of bacterial RecA proteins. J Biol Chem (2003) 1.03
Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA. Biochemistry (2006) 1.03
Self-association equilibria of Escherichia coli UvrD helicase studied by analytical ultracentrifugation. J Mol Biol (2003) 1.02
Inhibition of RecA protein function by the RdgC protein from Escherichia coli. J Biol Chem (2005) 1.02
Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair. J Mol Biol (2013) 1.02
Srs2 prevents Rad51 filament formation by repetitive motion on DNA. Nat Commun (2013) 1.01
Probing 3'-ssDNA loop formation in E. coli RecBCD/RecBC-DNA complexes using non-natural DNA: a model for "Chi" recognition complexes. J Mol Biol (2006) 0.99
Inhibition of RecA protein by the Escherichia coli RecX protein: modulation by the RecA C terminus and filament functional state. J Biol Chem (2004) 0.99
Binding of the dimeric Deinococcus radiodurans single-stranded DNA binding protein to single-stranded DNA. Biochemistry (2010) 0.98
Structure and cellular dynamics of Deinococcus radiodurans single-stranded DNA (ssDNA)-binding protein (SSB)-DNA complexes. J Biol Chem (2012) 0.97
Roles of DNA polymerase V and RecA protein in SOS damage-induced mutation. Chem Rev (2006) 0.97
The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity. DNA Repair (Amst) (2011) 0.95
An SOS inhibitor that binds to free RecA protein: the PsiB protein. Mol Cell (2009) 0.94
Kinetic control of Mg2+-dependent melting of duplex DNA ends by Escherichia coli RecBC. J Mol Biol (2008) 0.93
Complementation of one RecA protein point mutation by another. Evidence for trans catalysis of ATP hydrolysis. J Biol Chem (2006) 0.92
Influence of DNA end structure on the mechanism of initiation of DNA unwinding by the Escherichia coli RecBCD and RecBC helicases. J Mol Biol (2008) 0.92
Single-stranded DNA translocation of E. coli UvrD monomer is tightly coupled to ATP hydrolysis. J Mol Biol (2012) 0.90
Kinetics of motor protein translocation on single-stranded DNA. Methods Mol Biol (2010) 0.90
Plasmodium falciparum SSB tetramer wraps single-stranded DNA with similar topology but opposite polarity to E. coli SSB. J Mol Biol (2012) 0.89
Fluorescence methods to study DNA translocation and unwinding kinetics by nucleic acid motors. Methods Mol Biol (2012) 0.89
Mismatch repair inhibits homeologous recombination via coordinated directional unwinding of trapped DNA structures. Mol Cell (2013) 0.89
Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis. Proc Natl Acad Sci U S A (2002) 0.89
The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones. PLoS One (2013) 0.89
Regulation of Deinococcus radiodurans RecA protein function via modulation of active and inactive nucleoprotein filament states. J Biol Chem (2013) 0.88
Defective dissociation of a "slow" RecA mutant protein imparts an Escherichia coli growth defect. J Biol Chem (2008) 0.88