PubRank

Yuji Kohara

Author PubWeight™ 147.56‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 2002 11.11
2 Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 2008 10.11
3 The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 2007 8.12
4 The amphioxus genome and the evolution of the chordate karyotype. Nature 2008 8.03
5 The medaka draft genome and insights into vertebrate genome evolution. Nature 2007 5.77
6 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 2004 5.08
7 Inducible antibacterial defense system in C. elegans. Curr Biol 2002 4.42
8 TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM. Nat Immunol 2004 4.11
9 The landscape of C. elegans 3'UTRs. Science 2010 3.32
10 Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet 2007 3.27
11 Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res 2007 3.12
12 Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science 2008 3.10
13 Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc Natl Acad Sci U S A 2003 2.33
14 Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res 2010 2.19
15 The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Dev Biol 2006 2.00
16 Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting. PLoS Genet 2007 1.70
17 Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE. BMC Genomics 2009 1.63
18 Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res 2003 1.58
19 ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol 2008 1.55
20 Axial patterning in cephalochordates and the evolution of the organizer. Nature 2007 1.52
21 Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J 2003 1.49
22 Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Res 2009 1.47
23 Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics 2010 1.41
24 Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pull-down of poly(A) tails. Genome Biol 2005 1.35
25 Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system. Proc Natl Acad Sci U S A 2007 1.31
26 A Caenorhabditis elegans TGF-beta, DBL-1, controls the expression of LON-1, a PR-related protein, that regulates polyploidization and body length. EMBO J 2002 1.28
27 Translational control of maternal glp-1 mRNA by POS-1 and its interacting protein SPN-4 in Caenorhabditis elegans. Development 2003 1.21
28 Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori. Insect Biochem Mol Biol 2008 1.20
29 Latrophilin signaling links anterior-posterior tissue polarity and oriented cell divisions in the C. elegans embryo. Dev Cell 2009 1.18
30 A genomewide survey of developmentally relevant genes in Ciona intestinalis. I. Genes for bHLH transcription factors. Dev Genes Evol 2003 1.18
31 Medaka genomics: a bridge between mutant phenotype and gene function. Mech Dev 2004 1.17
32 Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum. Nucleic Acids Res 2004 1.15
33 Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis. Gene 2002 1.14
34 The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. Genome Res 2013 1.14
35 A genomewide survey of developmentally relevant genes in Ciona intestinalis. II. Genes for homeobox transcription factors. Dev Genes Evol 2003 1.11
36 Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res 2013 1.10
37 Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis. Genome Res 2005 1.09
38 A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae. Dev Genes Evol 2008 1.06
39 Transcriptome analysis of hagfish leukocytes: a framework for understanding the immune system of jawless fishes. Dev Comp Immunol 2004 1.04
40 Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat. Mol Genet Genomics 2006 1.04
41 Hagfish leukocytes express a paired receptor family with a variable domain resembling those of antigen receptors. J Immunol 2005 1.03
42 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol 2003 1.03
43 Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina. DNA Res 2010 1.02
44 SPI: a tool for incorporating gene expression data into a four-dimensional database of Caenorhabditis elegans embryogenesis. Bioinformatics 2004 1.01
45 Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. Genes Genet Syst 2004 1.01
46 NBRP databases: databases of biological resources in Japan. Nucleic Acids Res 2009 0.99
47 Construction of a gamete-enriched gene pool and RNAi-mediated functional analysis in Dictyostelium discoideum. Mech Dev 2003 0.99
48 A genomewide survey of developmentally relevant genes in Ciona intestinalis. III. Genes for Fox, ETS, nuclear receptors and NFkappaB. Dev Genes Evol 2003 0.98
49 RUNX regulates stem cell proliferation and differentiation: insights from studies of C. elegans. J Cell Biochem 2007 0.97
50 Gene expression profiles in young adult Ciona intestinalis. Dev Genes Evol 2002 0.97
51 Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock: identity of EST sequences between Haplochromis chilotes and Haplochromis sp. "Redtailsheller". Gene 2004 0.95
52 Large scale EST analyses in Ciona intestinalis: its application as Northern blot analyses. Dev Genes Evol 2003 0.95
53 C. elegans mig-6 encodes papilin isoforms that affect distinct aspects of DTC migration, and interacts genetically with mig-17 and collagen IV. Development 2009 0.94
54 Protocols for large scale in situ hybridization on C. elegans larvae. WormBook 2006 0.94
55 Gene expression profiles in tadpole larvae of Ciona intestinalis. Dev Biol 2002 0.94
56 EST analysis of gene expression in testis of the ascidian Ciona intestinalis. Mol Reprod Dev 2002 0.94
57 Protein phosphatase 2A cooperates with the autophagy-related kinase UNC-51 to regulate axon guidance in Caenorhabditis elegans. Development 2010 0.94
58 The C. elegans CBFbeta homologue BRO-1 interacts with the Runx factor, RNT-1, to promote stem cell proliferation and self-renewal. Development 2007 0.91
59 Caenorhabditis elegans reticulon interacts with RME-1 during embryogenesis. Biochem Biophys Res Commun 2002 0.91
60 Caenorhabditis elegans RBX1 is essential for meiosis, mitotic chromosomal condensation and segregation, and cytokinesis. Genes Cells 2003 0.91
61 Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Res 2002 0.90
62 Diversity in copy number and structure of a silkworm morphogenetic gene as a result of domestication. Genetics 2011 0.89
63 The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae. DNA Res 2004 0.88
64 cimp1, a novel astacin family metalloproteinase gene from East African cichlids, is differentially expressed between species during growth. Mol Biol Evol 2005 0.88
65 Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes. Gene 2006 0.87
66 Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells. Mol Microbiol 2013 0.87
67 The C. elegans RUNX transcription factor RNT-1/MAB-2 is required for asymmetrical cell division of the T blast cell. Dev Biol 2005 0.86
68 UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res 2007 0.86
69 magp4 gene may contribute to the diversification of cichlid morphs and their speciation. Gene 2006 0.83
70 The β-catenin HMP-2 functions downstream of Src in parallel with the Wnt pathway in early embryogenesis of C. elegans. Dev Biol 2011 0.82
71 Gene expression profiles in Ciona intestinalis cleavage-stage embryos. Mech Dev 2002 0.82
72 Polycystic kidney disease in the medaka (Oryzias latipes) pc mutant caused by a mutation in the Gli-Similar3 (glis3) gene. PLoS One 2009 0.82
73 Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets. Gene 2008 0.82
74 Identification of transcripts expressed preferentially in hemocytes of Ciona intestinalis that can be used as molecular markers. DNA Res 2004 0.81
75 Molecular cloning and characterization of the repetitive DNA sequences that comprise the constitutive heterochromatin of the W chromosomes of medaka fishes. Chromosome Res 2012 0.80
76 Transgenic analysis of the medaka mesp-b enhancer in somitogenesis. Dev Growth Differ 2006 0.80
77 Cyanobacterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J Mol Evol 2004 0.80
78 Comparative sequence analysis of a gene-dense region among closely related species of Drosophila melanogaster. Genes Genet Syst 2004 0.80
79 nfi-I affects behavior and life-span in C. elegans but is not essential for DNA replication or survival. BMC Dev Biol 2005 0.80
80 Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). DNA Res 2012 0.79
81 A genomic overview of short genetic variations in a basal chordate, Ciona intestinalis. BMC Genomics 2012 0.79
82 C. elegans VANG-1 modulates life span via insulin/IGF-1-like signaling. PLoS One 2012 0.78
83 Characterization of a novel C. elegans RGS protein with a C2 domain: evidence for direct association between C2 domain and Galphaq subunit. Life Sci 2003 0.78
84 Analysis of large scale expression sequenced tags (ESTs) from the anural ascidian, Molgula tectiformis. Dev Biol 2007 0.78
85 A cDNA resource for gene expression studies of a hemichordate, Ptychodera flava. Zoolog Sci 2014 0.77
86 VBP-1 is necessary for morphogenesis in Caenorhabditis elegans. Oncol Rep 2003 0.77
87 Large-scale analysis of the genes involved in fin regeneration and blastema formation in the medaka, Oryzias latipes. Mech Dev 2004 0.77
88 Mass identification of transcriptional units expressed from the Bombyx mori nucleopolyhedrovirus genome. J Gen Virol 2010 0.77
89 Computer simulation of the cellular arrangement using physical model in early cleavage of the nematode Caenorhabditis elegans. Bioinformatics 2003 0.75
90 [Why are genomes DNA?]. Tanpakushitsu Kakusan Koso 2003 0.75
91 [Genome-wide analyses of gene expression and function in C. elegans]. Tanpakushitsu Kakusan Koso 2005 0.75
92 Physical modeling of the cellular arrangement in C. elegans early embryo: effect of rounding and stiffening of the cells. Genome Inform 2002 0.75