Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site.

PubWeight™: 1.29‹?› | Rank: Top 10%

🔗 View Article (PMC 1865070)

Published in Nucleic Acids Res on February 07, 2007

Authors

Takashi Nishiyama1, Hiroshi Yamamoto, Toshio Uchiumi, Nobuhiko Nakashima

Author Affiliations

1: National Institute of Agrobiological Sciences, Owashi, Tsukuba, Ibaraki, 305-8634, Japan.

Articles citing this

Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning. Cell (2011) 4.26

Viral IRES RNA structures and ribosome interactions. Trends Biochem Sci (2008) 2.17

RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs. Genes Dev (2009) 1.87

Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome. Proc Natl Acad Sci U S A (2010) 1.68

Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome. Cell (2014) 1.62

A ribosome-specialized translation initiation pathway is required for cap-dependent translation of vesicular stomatitis virus mRNAs. Proc Natl Acad Sci U S A (2012) 1.43

IRES-induced conformational changes in the ribosome and the mechanism of translation initiation by internal ribosomal entry. Biochim Biophys Acta (2009) 1.34

Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes. J Mol Biol (2007) 1.15

RNA structure-based ribosome recruitment: lessons from the Dicistroviridae intergenic region IRESes. RNA (2008) 1.07

Modular domains of the Dicistroviridae intergenic internal ribosome entry site. RNA (2010) 1.00

Ribosomal proteins: functions beyond the ribosome. J Mol Cell Biol (2015) 0.99

Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit. Nucleic Acids Res (2011) 0.99

In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites. Nucleic Acids Res (2011) 0.93

Initiation of translation in bacteria by a structured eukaryotic IRES RNA. Nature (2015) 0.93

Tricks an IRES uses to enslave ribosomes. Trends Microbiol (2012) 0.92

Roles of the negatively charged N-terminal extension of Saccharomyces cerevisiae ribosomal protein S5 revealed by characterization of a yeast strain containing human ribosomal protein S5. RNA (2007) 0.91

Mechanism of translation initiation by Dicistroviridae IGR IRESs. Virology (2011) 0.90

Mechanistic role of structurally dynamic regions in Dicistroviridae IGR IRESs. J Mol Biol (2009) 0.86

In vitro infection of pupae with Israeli acute paralysis virus suggests disturbance of transcriptional homeostasis in honey bees (Apis mellifera). PLoS One (2013) 0.85

Re-analysis of cryoEM data on HCV IRES bound to 40S subunit of human ribosome integrated with recent structural information suggests new contact regions between ribosomal proteins and HCV RNA. RNA Biol (2014) 0.81

Insights into factorless translational initiation by the tRNA-like pseudoknot domain of a viral IRES. PLoS One (2012) 0.79

The DNA virus white spot syndrome virus uses an internal ribosome entry site for translation of the highly expressed nonstructural protein ICP35. J Virol (2013) 0.79

Regulatory Roles of Rpl22 in Hematopoiesis: An Old Dog with New Tricks. Crit Rev Immunol (2015) 0.77

Control of tissue size and development by a regulatory element in the yorkie 3'UTR. Am J Cancer Res (2017) 0.75

Molecular biology: signals across domains of life. Nature (2015) 0.75

Molecular analysis of the factorless internal ribosome entry site in Cricket Paralysis virus infection. Sci Rep (2016) 0.75

Articles cited by this

Crystal structure of the ribosome at 5.5 A resolution. Science (2001) 18.21

The ribosomal proteins of Escherichia coli. I. Purification of the 30S ribosomal proteins. Biochemistry (1969) 7.47

Dissociation of mammalian polyribosomes into subunits by puromycin. Proc Natl Acad Sci U S A (1971) 6.77

Molecular mechanisms of translation initiation in eukaryotes. Proc Natl Acad Sci U S A (2001) 5.80

Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science (2001) 4.79

Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell (1986) 4.65

Initiation of protein synthesis from the A site of the ribosome. Cell (2000) 4.56

Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus. J Mol Biol (2002) 2.90

Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA. Genes Dev (2003) 2.89

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell (2004) 2.84

The European small subunit ribosomal RNA database. Nucleic Acids Res (2000) 2.43

Structure of the ribosome-bound cricket paralysis virus IRES RNA. Nat Struct Mol Biol (2006) 2.32

Methionine-independent initiation of translation in the capsid protein of an insect RNA virus. Proc Natl Acad Sci U S A (2000) 2.31

Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro. J Virol (1999) 2.27

A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation. RNA (2001) 1.88

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA. Science (2006) 1.83

Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis. Proc Natl Acad Sci U S A (2003) 1.83

Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus. J Biol Chem (2001) 1.71

Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes. Nucleic Acids Res (2003) 1.68

Thionucleobases as intrinsic photoaffinity probes of nucleic acid structure and nucleic acid-protein interactions. J Photochem Photobiol B (1998) 1.64

Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly. EMBO Rep (2004) 1.53

Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction. RNA (2002) 1.48

Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site. RNA (2006) 1.43

A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs. RNA (2005) 1.38

Analysis of Escherichia coli ribosomal proteins by an improved two dimensional gel electrophoresis. I. Detection of four new proteins. J Biochem (1986) 1.27

Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts. RNA (2004) 1.19

Conformation and structural fluctuations of a 218 nucleotides long rRNA fragment: 4-thiouridine as an intrinsic photolabelling probe. Nucleic Acids Res (1991) 1.19

Determining the nucleotide sequence and capsid-coding region of himetobi P virus: a member of a novel group of RNA viruses that infect insects. Arch Virol (1999) 1.14

Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus. J Virol (2003) 1.10

A unique serine-specific elongation factor Tu found in nematode mitochondria. Nat Struct Biol (2002) 1.06

Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit. Nucleic Acids Res (2006) 1.03

Identification of neighboring protein pairs cross-linked with dimethyl 3,3'-dithiobispropionimidate in rat liver 40S ribosomal subunits. J Biochem (1981) 0.89

Reconstitution of eukaryotic translation elongation in vitro following initiation by internal ribosomal entry. Methods (2005) 0.82

Differential adsorption of occluded and nonoccluded insect-pathogenic viruses to soil-forming minerals. Appl Environ Microbiol (2006) 0.80

Isolation and physiochemical properties of protein-rich nematode mitochondrial ribosomes. Biochemistry (2005) 0.80

Isolation of polysomes from larval and adult Drosophila melanogaster. Anal Biochem (1981) 0.79

Articles by these authors

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection. Nat Med (2002) 5.17

Measurement of spleen stiffness by acoustic radiation force impulse imaging identifies cirrhotic patients with esophageal varices. Gastroenterology (2012) 3.37

Novel splice variants of the receptor for advanced glycation end-products expressed in human vascular endothelial cells and pericytes, and their putative roles in diabetes-induced vascular injury. Biochem J (2003) 3.29

Comparison of combined transcatheter arterial chemoembolization and radiofrequency ablation with surgical resection by using propensity score matching in patients with hepatocellular carcinoma within Milan criteria. Radiology (2013) 2.87

The N-terminal domain of thrombomodulin sequesters high-mobility group-B1 protein, a novel antiinflammatory mechanism. J Clin Invest (2005) 2.80

Identification of multiple isolated lymphoid follicles on the antimesenteric wall of the mouse small intestine. J Immunol (2002) 2.57

Molecular signature of quiescent satellite cells in adult skeletal muscle. Stem Cells (2007) 2.23

A free radical scavenger, edaravone (MCI-186), diminishes intestinal neutrophil lipid peroxidation and bacterial translocation in a rat hemorrhagic shock model. Crit Care Med (2005) 2.15

High preoperative neutrophil-lymphocyte ratio predicts poor survival in patients with gastric cancer. Gastric Cancer (2010) 2.11

Transgenic amplification of glucocorticoid action in adipose tissue causes high blood pressure in mice. J Clin Invest (2003) 1.95

Fibrosis and adipogenesis originate from a common mesenchymal progenitor in skeletal muscle. J Cell Sci (2011) 1.94

Advanced glycation endproduct-induced calcium handling impairment in mouse cardiac myocytes. J Mol Cell Cardiol (2002) 1.86

Purification and cell-surface marker characterization of quiescent satellite cells from murine skeletal muscle by a novel monoclonal antibody. Exp Cell Res (2004) 1.84

Role of premature leptin surge in obesity resulting from intrauterine undernutrition. Cell Metab (2005) 1.83

Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture. Arch Virol (2008) 1.80

Two cases of calcified amorphous tumor mimicking mitral valve vegetation. Circulation (2012) 1.79

Plasma free amino acid profiling of five types of cancer patients and its application for early detection. PLoS One (2011) 1.73

Adiponectin deficiency is associated with severe polymicrobial sepsis, high inflammatory cytokine levels, and high mortality. Surgery (2009) 1.71

Plasma level of endogenous secretory RAGE is associated with components of the metabolic syndrome and atherosclerosis. Arterioscler Thromb Vasc Biol (2005) 1.70

Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes. Nucleic Acids Res (2003) 1.68

The S100A8/A9 heterodimer amplifies proinflammatory cytokine production by macrophages via activation of nuclear factor kappa B and p38 mitogen-activated protein kinase in rheumatoid arthritis. Arthritis Res Ther (2006) 1.67

Dramatic changes of the gut flora immediately after severe and sudden insults. Dig Dis Sci (2011) 1.59

CCR5 plays a critical role in obesity-induced adipose tissue inflammation and insulin resistance by regulating both macrophage recruitment and M1/M2 status. Diabetes (2012) 1.56

Structure-activity relationship and biological property of cortistatins, anti-angiogenic spongean steroidal alkaloids. Bioorg Med Chem (2007) 1.52

Muscle regeneration by reconstitution with bone marrow or fetal liver cells from green fluorescent protein-gene transgenic mice. J Cell Sci (2002) 1.51

Disorders of cochlear blood flow. Brain Res Brain Res Rev (2003) 1.49

Blockade of endothelial-mesenchymal transition by a Smad3 inhibitor delays the early development of streptozotocin-induced diabetic nephropathy. Diabetes (2010) 1.48

Increased vascular wall thrombogenicity combined with reduced blood flow promotes occlusive thrombus formation in rabbit femoral artery. Arterioscler Thromb Vasc Biol (2004) 1.48

Low circulating endogenous secretory receptor for AGEs predicts cardiovascular mortality in patients with end-stage renal disease. Arterioscler Thromb Vasc Biol (2006) 1.47

Increased plasma interleukin-6 is associated with the pathogenesis of obstructive sleep apnea syndrome. Chest (2004) 1.47

Long-term effect of body weight-supported treadmill training in Parkinson's disease: a randomized controlled trial. Arch Phys Med Rehabil (2002) 1.45

Ectopic expression of homeodomain protein CDX2 in intestinal metaplasia and carcinomas of the stomach. Cancer Lett (2002) 1.45

Differences between right- and left-sided colon cancer in patient characteristics, cancer morphology and histology. J Gastroenterol Hepatol (2007) 1.45

The role of the receptor for advanced glycation end-products in lung fibrosis. Am J Physiol Lung Cell Mol Physiol (2007) 1.45

Increased neutrophils in bronchoalveolar lavage fluids from a patient with pulmonary edema associated with pheochromocytoma. Intern Med (2004) 1.43

RAGE control of diabetic nephropathy in a mouse model: effects of RAGE gene disruption and administration of low-molecular weight heparin. Diabetes (2006) 1.43

Potential benefits of early continuous positive pressure ventilation in patients with rapidly progressive interstitial pneumonia. Respirology (2012) 1.42

Safe and feasible inflow occlusion in laparoscopic liver resection. Surg Endosc (2008) 1.42

Role of gamma delta T cells in the inflammatory response of experimental colitis mice. J Immunol (2003) 1.39

Generation of skeletal muscle stem/progenitor cells from murine induced pluripotent stem cells. FASEB J (2010) 1.38

A free-floating left atrial thrombus develops intermittent entrapment in the mid-ventricle during diastole. Heart Vessels (2011) 1.38

Effects of obstructive sleep apnea on circulating ICAM-1, IL-8, and MCP-1. J Appl Physiol (1985) (2002) 1.38

Expression and sub-cellular localization of human ABH family molecules. J Cell Mol Med (2007) 1.36

Advanced glycation end products-induced apoptosis and overexpression of vascular endothelial growth factor in bovine retinal pericytes. Biochem Biophys Res Commun (2002) 1.36

A pivotal role of cytosolic phospholipase A(2) in bleomycin-induced pulmonary fibrosis. Nat Med (2002) 1.35

Inhibition of diabetic leukostasis and blood-retinal barrier breakdown with a soluble form of a receptor for advanced glycation end products. Invest Ophthalmol Vis Sci (2007) 1.32

Possibility of multivariate function composed of plasma amino acid profiles as a novel screening index for non-small cell lung cancer: a case control study. BMC Cancer (2010) 1.31

gammadelta T cells: firefighters or fire boosters in the front lines of inflammatory responses. Immunol Rev (2007) 1.31

Identification of histidine kinases that act as sensors in the perception of salt stress in Synechocystis sp. PCC 6803. Proc Natl Acad Sci U S A (2003) 1.30

Septic shock is associated with receptor for advanced glycation end products ligation of LPS. J Immunol (2011) 1.30

Suppression of macrophage functions impairs skeletal muscle regeneration with severe fibrosis. Exp Cell Res (2008) 1.29

Receptor for advanced glycation end products binds to phosphatidylserine and assists in the clearance of apoptotic cells. EMBO Rep (2011) 1.28

Serum levels of non-carboxymethyllysine advanced glycation endproducts are correlated to severity of microvascular complications in patients with Type 1 diabetes. J Diabetes Complications (2002) 1.26

Renal cell carcinoma with unusual metastasis to the gallbladder. J Hepatobiliary Pancreat Surg (2008) 1.26

Trunk deformity is associated with a reduction in outdoor activities of daily living and life satisfaction in community-dwelling older people. Osteoporos Int (2004) 1.24

Structure and biogenesis of the chloroplast NAD(P)H dehydrogenase complex. Biochim Biophys Acta (2010) 1.24

Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations. Proc Natl Acad Sci U S A (2011) 1.24

Relative safety of anterior microsurgical decompression versus laminoplasty for cervical myelopathy with a massive ossified posterior longitudinal ligament. Spine (Phila Pa 1976) (2002) 1.24

Functional analysis of structural motifs in dicistroviruses. Virus Res (2008) 1.23

Expression profiling of endogenous secretory receptor for advanced glycation end products in human organs. Mod Pathol (2005) 1.23

Receptor for advanced glycation end products is involved in impaired angiogenic response in diabetes. Diabetes (2006) 1.22

Prostate cancer antigen-1 contributes to cell survival and invasion though discoidin receptor 1 in human prostate cancer. Cancer Sci (2007) 1.21

Singlet oxygen inhibits the repair of photosystem II by suppressing the translation elongation of the D1 protein in Synechocystis sp. PCC 6803. Biochemistry (2004) 1.21

High-mobility group box 1 is involved in the initial events of early loss of transplanted islets in mice. J Clin Invest (2010) 1.21

Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts. RNA (2004) 1.19

Endogenous secretory receptor for advanced glycation endproducts levels are correlated with serum pentosidine and CML in patients with type 1 diabetes. Arterioscler Thromb Vasc Biol (2007) 1.18

Hepatoid carcinoma of the pancreas producing protein induced by vitamin K absence or antagonist II (PIVKA-II) and alpha-fetoprotein (AFP). J Gastroenterol (2006) 1.17

Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site. J Biol Chem (2007) 1.17

Hesr1 and Hesr3 are essential to generate undifferentiated quiescent satellite cells and to maintain satellite cell numbers. Development (2011) 1.16

Circulating concentrations of adiponectin, an endogenous lipopolysaccharide neutralizing protein, decrease in rats with polymicrobial sepsis. J Surg Res (2006) 1.16

Salt stress inhibits the repair of photodamaged photosystem II by suppressing the transcription and translation of psbA genes in synechocystis. Plant Physiol (2002) 1.16

Hypertension and dysregulated proinflammatory cytokine production in receptor activity-modifying protein 1-deficient mice. Proc Natl Acad Sci U S A (2007) 1.15

Generation of transplantable, functional satellite-like cells from mouse embryonic stem cells. FASEB J (2009) 1.15

Genetic background affects properties of satellite cells and mdx phenotypes. Am J Pathol (2010) 1.14

RAGE and soluble RAGE: potential therapeutic targets for cardiovascular diseases. Mol Med (2007) 1.11

Posture of the trunk in the sagittal plane is associated with gait in community-dwelling elderly population. Clin Biomech (Bristol, Avon) (2004) 1.11

Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus. J Virol (2003) 1.10

Correlation between semaphorin3A-induced facilitation of axonal transport and local activation of a translation initiation factor eukaryotic translation initiation factor 4E. J Neurosci (2004) 1.09

The complex of tmRNA-SmpB and EF-G on translocating ribosomes. Nature (2012) 1.09

The secreted form of the p40 subunit of interleukin (IL)-12 inhibits IL-23 functions and abrogates IL-23-mediated antitumour effects. Immunology (2006) 1.09

Anti-high mobility group box-1 antibody therapy for traumatic brain injury. Ann Neurol (2012) 1.08

Omnipotent role of archaeal elongation factor 1 alpha (EF1α in translational elongation and termination, and quality control of protein synthesis. Proc Natl Acad Sci U S A (2010) 1.08

Roles of the receptor for advanced glycation endproducts in diabetes-induced vascular injury. J Pharmacol Sci (2005) 1.08

Interaction among silkworm ribosomal proteins P1, P2 and P0 required for functional protein binding to the GTPase-associated domain of 28S rRNA. Nucleic Acids Res (2002) 1.08

A mode of assembly of P0, P1, and P2 proteins at the GTPase-associated center in animal ribosome: in vitro analyses with P0 truncation mutants. J Biol Chem (2005) 1.07

Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes. J Biol Chem (2009) 1.07

Clinical observation of patients with Fabry disease after switching from agalsidase beta (Fabrazyme) to agalsidase alfa (Replagal). Genet Med (2012) 1.07

De-N-glycosylation or G82S mutation of RAGE sensitizes its interaction with advanced glycation endproducts. Biochim Biophys Acta (2007) 1.06

RsfA (YbeB) proteins are conserved ribosomal silencing factors. PLoS Genet (2012) 1.06

Solution structure of the variable-type domain of the receptor for advanced glycation end products: new insight into AGE-RAGE interaction. Biochemistry (2008) 1.05

Glycation of a food allergen by the Maillard reaction enhances its T-cell immunogenicity: role of macrophage scavenger receptor class A type I and II. J Allergy Clin Immunol (2009) 1.05

Safe and feasible extrahepatic Glissonean access in laparoscopic anatomical liver resection. Surg Endosc (2010) 1.04

Central melanocortin signaling restores skeletal muscle AMP-activated protein kinase phosphorylation in mice fed a high-fat diet. Cell Metab (2007) 1.04

RAGE mediates oxidized LDL-induced pro-inflammatory effects and atherosclerosis in non-diabetic LDL receptor-deficient mice. Cardiovasc Res (2009) 1.04

RMF inactivates ribosomes by covering the peptidyl transferase centre and entrance of peptide exit tunnel. Genes Cells (2004) 1.04

Combination chemotherapy with doxorubicin, vincristine, cyclophosphamide, and platinum compounds for advanced thymic carcinoma. J Thorac Oncol (2011) 1.04