Published in J Bacteriol on April 06, 2007
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Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis. Environ Microbiol (2003) 1.61
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Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev (2002) 1.32
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol (2011) 1.24
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms. Environ Microbiol (2011) 1.20
Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microb Biotechnol (2008) 1.17
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. BMC Microbiol (2011) 1.15
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Functional transplantation of the sumoylation machinery into Escherichia coli. Protein Expr Purif (2004) 1.12
The environmental fate of organic pollutants through the global microbial metabolism. Mol Syst Biol (2007) 1.11
Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol (2005) 1.11
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett (2012) 1.09
Structural tolerance of bacterial autotransporters for folded passenger protein domains. Mol Microbiol (2004) 1.07
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Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin. J Mol Biol (2006) 1.06
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. Environ Microbiol (2013) 1.02
Sinorhizobium meliloti fur-like (Mur) protein binds a fur box-like sequence present in the mntA promoter in a manganese-responsive manner. Appl Environ Microbiol (2007) 1.01
Engineering the soil bacterium Pseudomonas putida for arsenic methylation. Appl Environ Microbiol (2013) 1.00
Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol (2005) 1.00
Emergence of novel functions in transcriptional regulators by regression to stem protein types. Mol Microbiol (2007) 0.99
Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain. Appl Environ Microbiol (2005) 0.98
Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida. J Bacteriol (2004) 0.98
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism. MBio (2012) 0.98
Evidence of in vivo cross talk between the nitrogen-related and fructose-related branches of the carbohydrate phosphotransferase system of Pseudomonas putida. J Bacteriol (2008) 0.96
Mining logic gates in prokaryotic transcriptional regulation networks. FEBS Lett (2008) 0.96
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. Metab Eng (2012) 0.95
The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.93
SIREs: searching for iron-responsive elements. Nucleic Acids Res (2010) 0.93
The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase. Biochim Biophys Acta (2011) 0.92
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ Microbiol (2008) 0.92
Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol Rev (2010) 0.90
Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.90
Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. Mol Microbiol (2011) 0.90
The ancestral role of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics. Res Microbiol (2007) 0.90
Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440. Environ Microbiol (2014) 0.89
Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol (2006) 0.89
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinformatics (2005) 0.89
Testing the limits of biological tolerance to arsenic in a fungus isolated from the River Tinto. Environ Microbiol (2003) 0.89
Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440. Microb Cell Fact (2013) 0.89
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ Microbiol (2012) 0.89
Subtractive hybridization reveals a high genetic diversity in the fish pathogen Photobacterium damselae subsp. piscicida: evidence of a SXT-like element. Microbiology (2005) 0.88
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida. J Biol Chem (2011) 0.86
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. Environ Microbiol (2010) 0.85
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J Biotechnol (2012) 0.85
Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. Methods Mol Biol (2012) 0.85
Freeing Pseudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses. Environ Microbiol (2014) 0.85
The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environ Microbiol (2006) 0.84
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae. Philos Trans R Soc Lond B Biol Sci (2013) 0.84
Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida. J Biol Chem (2007) 0.83
The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic. J Biol Chem (2004) 0.83
Systemic approaches to biodegradation. FEMS Microbiol Rev (2008) 0.82
Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria. PLoS Genet (2013) 0.82
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst Biol (2011) 0.82
Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene. Mol Microbiol (2011) 0.82
Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. Mol Microbiol (2008) 0.82
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. Mol Biosyst (2011) 0.82
The Standard European Vector Architecture (SEVA) plasmid toolkit. Methods Mol Biol (2014) 0.82
Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter. J Bacteriol (2003) 0.82
Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. J Bacteriol (2003) 0.81
The grammar of (micro)biological diversity. Environ Microbiol (2002) 0.81
The private life of environmental bacteria: pollutant biodegradation at the single cell level. Environ Microbiol (2014) 0.81
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. Environ Microbiol (2011) 0.81
In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules. Anal Bioanal Chem (2010) 0.81
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ Microbiol (2011) 0.81
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. Environ Microbiol (2012) 0.80
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. Mol Biosyst (2012) 0.80
Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. ACS Synth Biol (2013) 0.80
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells. J Microbiol Methods (2007) 0.80
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes. Environ Microbiol Rep (2013) 0.80
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. Mol Biosyst (2011) 0.80
The salt-induced ABC transporter Ota of the methanogenic archaeon Methanosarcina mazei Gö1 is a glycine betaine transporter. FEMS Microbiol Lett (2007) 0.79
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene. Mol Microbiol (2012) 0.79
Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2. Mol Microbiol (2005) 0.79
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol (2012) 0.79
The IHF regulon of exponentially growing Pseudomonas putida cells. Environ Microbiol (2012) 0.78
Emergence and evolutionary analysis of the human DDR network: implications in comparative genomics and downstream analyses. Mol Biol Evol (2014) 0.78
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation. Environ Microbiol (2014) 0.78
Secretion of proteins with dimerization capacity by the haemolysin type I transport system of Escherichia coli. Mol Microbiol (2004) 0.78
Bionemo: molecular information on biodegradation metabolism. Nucleic Acids Res (2008) 0.77
Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo. Nucleic Acids Res (2003) 0.77
From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced in Pseudomonas putida. FEMS Microbiol Lett (2014) 0.77
Osmotic stress limits arsenic hypertolerance in Aspergillus sp. P37. FEMS Microbiol Ecol (2007) 0.77
Streamlining of a Pseudomonas putida genome using a combinatorial deletion method based on minitransposon insertion and the Flp-FRT recombination system. Methods Mol Biol (2012) 0.77
A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol. Environ Microbiol (2014) 0.77
Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things. Bioessays (2014) 0.77
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. ISME J (2012) 0.76
m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442. J Bacteriol (2005) 0.76