Published in Mol Biosyst on May 17, 2011
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening. Microb Biotechnol (2014) 0.84
Circuit-level input integration in bacterial gene regulation. Proc Natl Acad Sci U S A (2013) 0.80
Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system. PLoS One (2012) 0.78
The Chromobacterium violaceum ArsR Arsenite Repressor Exerts Tighter Control on Its Cognate Promoter Than the Escherichia coli System. Front Microbiol (2016) 0.75
Refactoring the λ phage lytic/lysogenic decision with a synthetic regulator. Microbiologyopen (2016) 0.75
Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis. Environ Microbiol (2003) 1.61
Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol (2005) 1.52
Export of autotransported proteins proceeds through an oligomeric ring shaped by C-terminal domains. EMBO J (2002) 1.50
Microbial responses to environmental arsenic. Biometals (2009) 1.48
Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J Biol Chem (2006) 1.45
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res (2012) 1.42
Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli. J Mol Biol (2002) 1.39
Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev (2002) 1.32
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol (2011) 1.24
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms. Environ Microbiol (2011) 1.20
Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microb Biotechnol (2008) 1.17
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. BMC Microbiol (2011) 1.15
The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol (2003) 1.14
Noise and robustness in prokaryotic regulatory networks. Annu Rev Microbiol (2010) 1.13
Functional transplantation of the sumoylation machinery into Escherichia coli. Protein Expr Purif (2004) 1.12
The environmental fate of organic pollutants through the global microbial metabolism. Mol Syst Biol (2007) 1.11
Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol (2005) 1.11
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett (2012) 1.09
Structural tolerance of bacterial autotransporters for folded passenger protein domains. Mol Microbiol (2004) 1.07
Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin. J Mol Biol (2006) 1.06
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. Environ Microbiol (2013) 1.02
Sinorhizobium meliloti fur-like (Mur) protein binds a fur box-like sequence present in the mntA promoter in a manganese-responsive manner. Appl Environ Microbiol (2007) 1.01
Engineering the soil bacterium Pseudomonas putida for arsenic methylation. Appl Environ Microbiol (2013) 1.00
Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol (2005) 1.00
The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida. J Bacteriol (2007) 0.99
Emergence of novel functions in transcriptional regulators by regression to stem protein types. Mol Microbiol (2007) 0.99
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism. MBio (2012) 0.98
Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain. Appl Environ Microbiol (2005) 0.98
Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida. J Bacteriol (2004) 0.98
Evidence of in vivo cross talk between the nitrogen-related and fructose-related branches of the carbohydrate phosphotransferase system of Pseudomonas putida. J Bacteriol (2008) 0.96
Mining logic gates in prokaryotic transcriptional regulation networks. FEBS Lett (2008) 0.96
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. Metab Eng (2012) 0.95
The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.93
The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase. Biochim Biophys Acta (2011) 0.92
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ Microbiol (2008) 0.92
The ancestral role of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics. Res Microbiol (2007) 0.90
Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.90
Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol Rev (2010) 0.90
Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. Mol Microbiol (2011) 0.90
Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440. Environ Microbiol (2014) 0.89
Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol (2006) 0.89
Testing the limits of biological tolerance to arsenic in a fungus isolated from the River Tinto. Environ Microbiol (2003) 0.89
Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440. Microb Cell Fact (2013) 0.89
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ Microbiol (2012) 0.89
Subtractive hybridization reveals a high genetic diversity in the fish pathogen Photobacterium damselae subsp. piscicida: evidence of a SXT-like element. Microbiology (2005) 0.88
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida. J Biol Chem (2011) 0.86
Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. Methods Mol Biol (2012) 0.85
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J Biotechnol (2012) 0.85
Freeing Pseudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses. Environ Microbiol (2014) 0.85
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. Environ Microbiol (2010) 0.85
The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environ Microbiol (2006) 0.84
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae. Philos Trans R Soc Lond B Biol Sci (2013) 0.84
The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic. J Biol Chem (2004) 0.83
Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida. J Biol Chem (2007) 0.83
Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter. J Bacteriol (2003) 0.82
Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria. PLoS Genet (2013) 0.82
Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. Mol Microbiol (2008) 0.82
Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene. Mol Microbiol (2011) 0.82
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst Biol (2011) 0.82
The Standard European Vector Architecture (SEVA) plasmid toolkit. Methods Mol Biol (2014) 0.82
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ Microbiol (2011) 0.81
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. Environ Microbiol (2011) 0.81
Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. J Bacteriol (2003) 0.81
In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules. Anal Bioanal Chem (2010) 0.81
The private life of environmental bacteria: pollutant biodegradation at the single cell level. Environ Microbiol (2014) 0.81
The grammar of (micro)biological diversity. Environ Microbiol (2002) 0.81
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. Environ Microbiol (2012) 0.80
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. Mol Biosyst (2011) 0.80
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells. J Microbiol Methods (2007) 0.80
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. Mol Biosyst (2012) 0.80
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes. Environ Microbiol Rep (2013) 0.80
Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. ACS Synth Biol (2013) 0.80
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene. Mol Microbiol (2012) 0.79
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol (2012) 0.79
Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2. Mol Microbiol (2005) 0.79
Secretion of proteins with dimerization capacity by the haemolysin type I transport system of Escherichia coli. Mol Microbiol (2004) 0.78
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation. Environ Microbiol (2014) 0.78
The IHF regulon of exponentially growing Pseudomonas putida cells. Environ Microbiol (2012) 0.78
Streamlining of a Pseudomonas putida genome using a combinatorial deletion method based on minitransposon insertion and the Flp-FRT recombination system. Methods Mol Biol (2012) 0.77
Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things. Bioessays (2014) 0.77
Osmotic stress limits arsenic hypertolerance in Aspergillus sp. P37. FEMS Microbiol Ecol (2007) 0.77
Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo. Nucleic Acids Res (2003) 0.77
From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced in Pseudomonas putida. FEMS Microbiol Lett (2014) 0.77
A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol. Environ Microbiol (2014) 0.77
Arsenate transport and reduction in the hyper-tolerant fungus Aspergillus sp. P37. Environ Microbiol (2003) 0.76
m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442. J Bacteriol (2005) 0.76
The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space. Environ Microbiol (2012) 0.76
Towards a global biotechnology scenario. Curr Opin Biotechnol (2012) 0.76
Microbial systems biology: bottom up and top down. FEMS Microbiol Rev (2008) 0.76
In vivo drafting of single-chain antibodies for regulatory duty on the sigma54-promoter Pu of the TOL plasmid. Mol Microbiol (2006) 0.76
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. ISME J (2012) 0.76
Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida. BMC Syst Biol (2012) 0.75
Chromosomal integration of transcriptional fusions. Methods Mol Biol (2014) 0.75
Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting. Mol Microbiol (2011) 0.75
An electro-optical device from a biofilm structure created by bacterial activity. Adv Mater (2010) 0.75
Widening functional boundaries of the σ(54) promoter Pu of Pseudomonas putida by defeating extant physiological constraints. Mol Biosyst (2015) 0.75
Beautiful is not (necessarily) right: overcoming the Phryne's trial syndrome. Bioessays (2010) 0.75
The upstream-activating sequences of the sigma54 promoter Pu of Pseudomonas putida filter transcription readthrough from upstream genes. J Biol Chem (2006) 0.75
Production and characterization of a recombinant single-chain antibody (scFv) for tracing the σ54 factor of Pseudomonas putida. J Biotechnol (2011) 0.75