Published in J Bacteriol on June 01, 2003
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev (2006) 6.39
Increasing signal specificity of the TOL network of Pseudomonas putida mt-2 by rewiring the connectivity of the master regulator XylR. PLoS Genet (2012) 0.78
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. ISME J (2012) 0.76
m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442. J Bacteriol (2005) 0.76
Making antibodies by phage display technology. Annu Rev Immunol (1994) 5.04
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J Bacteriol (1993) 4.34
Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J Bacteriol (1989) 4.26
Functional modulation of Escherichia coli RNA polymerase. Annu Rev Microbiol (2000) 3.71
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription. Cell (1991) 3.70
The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J Bacteriol (2000) 3.63
Eubacterial sigma-factors. FEMS Microbiol Rev (1998) 3.13
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J Bacteriol (1996) 2.61
Prokaryotic transcriptional enhancers and enhancer-binding proteins. Trends Biochem Sci (1991) 2.56
Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions. J Bacteriol (1989) 2.55
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol (1997) 2.39
Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev (2002) 2.36
A temporally controlled sigma-factor is required for polar morphogenesis and normal cell division in Caulobacter. Genes Dev (1992) 2.13
Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ Microbiol (2002) 2.07
A helper phage to improve single-chain antibody presentation in phage display. Nat Biotechnol (2001) 1.72
The regulation of nitrogen utilization in enteric bacteria. J Cell Biochem (1993) 1.67
The oxygen-responsive NIFL-NIFA complex: a novel two-component regulatory system controlling nitrogenase synthesis in gamma-proteobacteria. Arch Microbiol (1998) 1.61
The IIANtr (PtsN) protein of Pseudomonas putida mediates the C source inhibition of the sigma54-dependent Pu promoter of the TOL plasmid. J Biol Chem (1999) 1.32
Involvement of sigma 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter. Mol Microbiol (1996) 1.30
The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase. J Biol Chem (2002) 1.28
sigma54, a vital protein for Myxococcus xanthus. Proc Natl Acad Sci U S A (1997) 1.22
Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01. Environ Microbiol (2002) 1.14
Specific detection of his-tagged proteins with recombinant anti-His tag scFv-phosphatase or scFv-phage fusions. Biotechniques (1997) 1.12
Genetic evidence of distinct physiological regulation mechanisms in the sigma(54) Pu promoter of Pseudomonas putida. J Bacteriol (2000) 1.09
Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD. EMBO J (1998) 1.08
Specific secretion of active single-chain Fv antibodies into the supernatants of Escherichia coli cultures by use of the hemolysin system. Appl Environ Microbiol (2000) 1.03
The amino-terminal domain of the prokaryotic enhancer-binding protein XylR is a specific intramolecular repressor. Proc Natl Acad Sci U S A (1995) 1.02
Involvement of the FtsH (HflB) protease in the activity of sigma 54 promoters. Mol Microbiol (1999) 1.00
Role of ptsO in carbon-mediated inhibition of the Pu promoter belonging to the pWW0 Pseudomonas putida plasmid. J Bacteriol (2001) 1.00
In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phase. J Biol Chem (2001) 0.97
Regulation of the rpoN, ORF102 and ORF154 genes in Pseudomonas putida. FEMS Microbiol Lett (1994) 0.97
Recruitment of RNA polymerase is a rate-limiting step for the activation of the sigma(54) promoter Pu of Pseudomonas putida. J Biol Chem (1999) 0.87
Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis. Environ Microbiol (2003) 1.61
Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol (2005) 1.52
Export of autotransported proteins proceeds through an oligomeric ring shaped by C-terminal domains. EMBO J (2002) 1.50
Microbial responses to environmental arsenic. Biometals (2009) 1.48
Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J Biol Chem (2006) 1.45
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res (2012) 1.42
Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli. J Mol Biol (2002) 1.39
Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev (2002) 1.32
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol (2011) 1.24
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms. Environ Microbiol (2011) 1.20
Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microb Biotechnol (2008) 1.17
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. BMC Microbiol (2011) 1.15
The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol (2003) 1.14
Noise and robustness in prokaryotic regulatory networks. Annu Rev Microbiol (2010) 1.13
Conjugative transfer can be inhibited by blocking relaxase activity within recipient cells with intrabodies. Mol Microbiol (2006) 1.13
Functional transplantation of the sumoylation machinery into Escherichia coli. Protein Expr Purif (2004) 1.12
The environmental fate of organic pollutants through the global microbial metabolism. Mol Syst Biol (2007) 1.11
Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol (2005) 1.11
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett (2012) 1.09
Structural tolerance of bacterial autotransporters for folded passenger protein domains. Mol Microbiol (2004) 1.07
Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin. J Mol Biol (2006) 1.06
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. Environ Microbiol (2013) 1.02
Sinorhizobium meliloti fur-like (Mur) protein binds a fur box-like sequence present in the mntA promoter in a manganese-responsive manner. Appl Environ Microbiol (2007) 1.01
Engineering the soil bacterium Pseudomonas putida for arsenic methylation. Appl Environ Microbiol (2013) 1.00
Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol (2005) 1.00
Emergence of novel functions in transcriptional regulators by regression to stem protein types. Mol Microbiol (2007) 0.99
The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida. J Bacteriol (2007) 0.99
Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida. J Bacteriol (2004) 0.98
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism. MBio (2012) 0.98
Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain. Appl Environ Microbiol (2005) 0.98
Evidence of in vivo cross talk between the nitrogen-related and fructose-related branches of the carbohydrate phosphotransferase system of Pseudomonas putida. J Bacteriol (2008) 0.96
Mining logic gates in prokaryotic transcriptional regulation networks. FEBS Lett (2008) 0.96
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. Metab Eng (2012) 0.95
The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.93
The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase. Biochim Biophys Acta (2011) 0.92
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ Microbiol (2008) 0.92
Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.90
Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. Mol Microbiol (2011) 0.90
Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol Rev (2010) 0.90
The ancestral role of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics. Res Microbiol (2007) 0.90
Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440. Environ Microbiol (2014) 0.89
Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol (2006) 0.89
Testing the limits of biological tolerance to arsenic in a fungus isolated from the River Tinto. Environ Microbiol (2003) 0.89
Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440. Microb Cell Fact (2013) 0.89
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ Microbiol (2012) 0.89
Subtractive hybridization reveals a high genetic diversity in the fish pathogen Photobacterium damselae subsp. piscicida: evidence of a SXT-like element. Microbiology (2005) 0.88
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida. J Biol Chem (2011) 0.86
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. Environ Microbiol (2010) 0.85
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J Biotechnol (2012) 0.85
Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. Methods Mol Biol (2012) 0.85
Freeing Pseudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses. Environ Microbiol (2014) 0.85
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae. Philos Trans R Soc Lond B Biol Sci (2013) 0.84
The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environ Microbiol (2006) 0.84
The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic. J Biol Chem (2004) 0.83
Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida. J Biol Chem (2007) 0.83
Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria. PLoS Genet (2013) 0.82
The Standard European Vector Architecture (SEVA) plasmid toolkit. Methods Mol Biol (2014) 0.82
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. Mol Biosyst (2011) 0.82
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst Biol (2011) 0.82
Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. Mol Microbiol (2008) 0.82
Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene. Mol Microbiol (2011) 0.82
Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. J Bacteriol (2003) 0.81
The grammar of (micro)biological diversity. Environ Microbiol (2002) 0.81
In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules. Anal Bioanal Chem (2010) 0.81
The private life of environmental bacteria: pollutant biodegradation at the single cell level. Environ Microbiol (2014) 0.81
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. Environ Microbiol (2011) 0.81
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ Microbiol (2011) 0.81
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes. Environ Microbiol Rep (2013) 0.80
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. Mol Biosyst (2011) 0.80
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. Environ Microbiol (2012) 0.80
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells. J Microbiol Methods (2007) 0.80
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. Mol Biosyst (2012) 0.80
Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. ACS Synth Biol (2013) 0.80
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene. Mol Microbiol (2012) 0.79
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol (2012) 0.79
Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2. Mol Microbiol (2005) 0.79
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation. Environ Microbiol (2014) 0.78
The IHF regulon of exponentially growing Pseudomonas putida cells. Environ Microbiol (2012) 0.78
Secretion of proteins with dimerization capacity by the haemolysin type I transport system of Escherichia coli. Mol Microbiol (2004) 0.78
Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo. Nucleic Acids Res (2003) 0.77
Osmotic stress limits arsenic hypertolerance in Aspergillus sp. P37. FEMS Microbiol Ecol (2007) 0.77
Confidence, tolerance, and allowance in biological engineering: the nuts and bolts of living things. Bioessays (2014) 0.77
A second chromosomal copy of the catA gene endows Pseudomonas putida mt-2 with an enzymatic safety valve for excess of catechol. Environ Microbiol (2014) 0.77
From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced in Pseudomonas putida. FEMS Microbiol Lett (2014) 0.77
Streamlining of a Pseudomonas putida genome using a combinatorial deletion method based on minitransposon insertion and the Flp-FRT recombination system. Methods Mol Biol (2012) 0.77
The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space. Environ Microbiol (2012) 0.76
m-xylene-responsive Pu-PnifH hybrid sigma54 promoters that overcome physiological control in Pseudomonas putida KT2442. J Bacteriol (2005) 0.76
Microbial systems biology: bottom up and top down. FEMS Microbiol Rev (2008) 0.76
Towards a global biotechnology scenario. Curr Opin Biotechnol (2012) 0.76
Arsenate transport and reduction in the hyper-tolerant fungus Aspergillus sp. P37. Environ Microbiol (2003) 0.76
In vivo drafting of single-chain antibodies for regulatory duty on the sigma54-promoter Pu of the TOL plasmid. Mol Microbiol (2006) 0.76
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. ISME J (2012) 0.76
Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida. BMC Syst Biol (2012) 0.75
Chromosomal integration of transcriptional fusions. Methods Mol Biol (2014) 0.75
Beautiful is not (necessarily) right: overcoming the Phryne's trial syndrome. Bioessays (2010) 0.75
Low-cost visible-near infrared sensor for on-line monitoring of fat and fatty acids content during the manufacturing process of the milk. Food Chem (2012) 0.75
An electro-optical device from a biofilm structure created by bacterial activity. Adv Mater (2010) 0.75