Genetic basis for dosage sensitivity in Arabidopsis thaliana.

PubWeight™: 1.01‹?› | Rank: Top 15%

🔗 View Article (PMC 1857734)

Published in PLoS Genet on March 19, 2007

Authors

Isabelle M Henry1, Brian P Dilkes, Luca Comai

Author Affiliations

1: Department of Biology, University of Washington, Seattle, Washington, United States of America.

Articles citing this

The maternally expressed WRKY transcription factor TTG2 controls lethality in interploidy crosses of Arabidopsis. PLoS Biol (2008) 1.23

Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. Proc Natl Acad Sci U S A (2010) 1.20

Effects of aneuploidy on genome structure, expression, and interphase organization in Arabidopsis thaliana. PLoS Genet (2008) 1.19

Phenotypic consequences of aneuploidy in Arabidopsis thaliana. Genetics (2010) 1.12

Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities. Philos Trans R Soc Lond B Biol Sci (2010) 0.96

Reciprocal chromosome translocation associated with TDNA-insertion mutation in Arabidopsis: genetic and cytological analyses of consequences for gametophyte development and for construction of doubly mutant lines. Planta (2008) 0.94

Dosage-sensitive function of retinoblastoma related and convergent epigenetic control are required during the Arabidopsis life cycle. PLoS Genet (2010) 0.90

Emergence of apospory and bypass of meiosis via apomixis after sexual hybridisation and polyploidisation. New Phytol (2014) 0.90

Aneuploidy causes tissue-specific qualitative changes in global gene expression patterns in maize. Plant Physiol (2009) 0.86

Catastrophic chromosomal restructuring during genome elimination in plants. Elife (2015) 0.85

Transgene expression and transgene-induced silencing in diploid and autotetraploid Arabidopsis. Genetics (2010) 0.82

Polyploidy in the Arabidopsis genus. Chromosome Res (2014) 0.80

Progress and Promise in using Arabidopsis to Study Adaptation, Divergence, and Speciation. Arabidopsis Book (2010) 0.77

Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma (2016) 0.75

Meiotically asynapsis-induced aneuploidy in autopolyploid Arabidopsis thaliana. J Plant Res (2009) 0.75

Global analysis of gene expression in response to whole-chromosome aneuploidy in hexaploid wheat. Plant Physiol (2017) 0.75

Articles cited by this

Segmental aneuploidy and the genetic gross structure of the Drosophila genome. Genetics (1972) 22.68

Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics (1994) 16.47

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24

A Cytological and Genetical Study of Triploid Maize. Genetics (1929) 10.35

The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol (2005) 10.13

Widespread aneuploidy revealed by DNA microarray expression profiling. Nat Genet (2000) 7.26

Dosage sensitivity and the evolution of gene families in yeast. Nature (2003) 6.77

Genomic profiling of drug sensitivities via induced haploinsufficiency. Nat Genet (1999) 5.06

From polyploidy to aneuploidy, genome instability and cancer. Nat Rev Mol Cell Biol (2004) 4.72

Chromatin remodeling in dosage compensation. Annu Rev Genet (2005) 4.62

Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. Dev Biol (2001) 3.51

The tolerance of aneuploidy in yeast. Genet Res (1970) 2.81

Meiotic pairing and imprinted X chromatin assembly in Caenorhabditis elegans. Nat Genet (2003) 2.77

Global up-regulation of chromosome 21 gene expression in the developing Down syndrome brain. Genomics (2003) 2.19

Comparative genome hybridization reveals widespread aneuploidy in Candida albicans laboratory strains. Mol Microbiol (2005) 2.16

A change of ploidy can modify epigenetic silencing. Proc Natl Acad Sci U S A (1996) 2.15

Trans-acting dosage effects on the expression of model gene systems in maize aneuploids. Science (1994) 2.11

Meiotic silencing by unpaired DNA: properties, regulation and suppression. Genetics (2002) 2.09

Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response. Genetics (2005) 1.94

Transcriptome analysis of human autosomal trisomy. Hum Mol Genet (2002) 1.90

Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics (2002) 1.77

Rapid structural and epigenetic changes in polyploid and aneuploid genomes. Bioessays (1999) 1.76

Dosage analysis of maize endosperm development. Annu Rev Genet (1993) 1.68

Cancer biology. A matter of dosage. Science (2002) 1.59

Formation of stable epialleles and their paramutation-like interaction in tetraploid Arabidopsis thaliana. Nat Genet (2003) 1.58

Aneuploid neurons are functionally active and integrated into brain circuitry. Proc Natl Acad Sci U S A (2005) 1.53

How aneuploidy may cause cancer and genetic instability. Anticancer Res (2000) 1.52

Does the intrinsic instability of aneuploid genomes have a causal role in cancer? Trends Genet (2003) 1.35

Cytological and Genetical Identification of the Primary Trisomics of the Tomato. Genetics (1954) 1.31

Determination of the relative ploidy in different Saccharomyces cerevisiae strains used for fermentation and 'flor' film ageing of dry sherry-type wines. Yeast (1997) 1.31

Human cytotrophoblasts acquire aneuploidies as they differentiate to an invasive phenotype. Dev Biol (2005) 1.25

Chromosome segregation defects contribute to aneuploidy in normal neural progenitor cells. J Neurosci (2003) 1.24

Gene dosage balance: deletions, duplications and dominance. Trends Genet (2005) 1.23

The control of natural variation in cytosine methylation in Arabidopsis. Genetics (2002) 1.23

Transcriptional consequences of autosomal trisomy: primary gene dosage with complex downstream effects. Trends Genet (2005) 1.22

Genomic change and gene silencing in polyploids. Trends Genet (2001) 1.14

Evidence for aneuploidy and recombination in the human commensal yeast Candida parapsilosis. Infect Genet Evol (2004) 1.13

Chromosome Studies in Arabidopsis Thaliana. Genetics (1963) 1.07

Structural instability of a transgene locus in tobacco is associated with aneuploidy. Plant J (1996) 1.00

The triploid progeny of the cross diploid x tetraploid Populus tremula. Hereditas (1945) 0.93

Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J (2006) 0.92

Sex chromosome inactivation: the importance of pairing. Curr Biol (2005) 0.90

Chromosome instability in neoplasia: chaotic roots to continuous growth. Int J Biochem Cell Biol (2005) 0.89

Inheritance and expression of a transgene insert in an aneuploid tobacco line. Mol Gen Genet (1994) 0.88

The tolerance of extra chromosomes by primitive tomatoes. Genetics (1961) 0.85

Developmental impact on trans-acting dosage effects in maize aneuploids. Genesis (2001) 0.84

The first high-resolution DNA "methylome". Cell (2006) 0.82

Molecular cytogenetic studies towards the full karyotype analysis of human blastocysts and cytotrophoblasts. Cytogenet Genome Res (2006) 0.81

Chromosome Numbers in Crosses of Diploid, Triploid and Tetraploid Maize. Genetics (1947) 0.76

Articles by these authors

Understanding mechanisms of novel gene expression in polyploids. Trends Genet (2003) 4.90

Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res (2003) 4.39

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics (2005) 3.78

Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics (2003) 3.70

Single-nucleotide mutations for plant functional genomics. Annu Rev Plant Biol (2003) 3.39

Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant. Plant Cell (2002) 2.72

Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids. Genetics (2004) 2.62

Parent-dependent loss of gene silencing during interspecies hybridization. Curr Biol (2006) 2.58

Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biol (2004) 2.57

A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol (2009) 2.57

Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol (2007) 2.46

Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol (2002) 2.41

TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol (2004) 2.29

Genomic changes in synthetic Arabidopsis polyploids. Plant J (2005) 2.26

Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res (2004) 2.14

TILLING to detect induced mutations in soybean. BMC Plant Biol (2008) 2.13

Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc Natl Acad Sci U S A (2004) 2.12

A protocol for TILLING and Ecotilling in plants and animals. Nat Protoc (2006) 2.09

Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response. Genetics (2005) 1.94

High-throughput TILLING for functional genomics. Methods Mol Biol (2003) 1.70

The effect of stress on genome regulation and structure. Ann Bot (2004) 1.66

Maize opaque endosperm mutations create extensive changes in patterns of gene expression. Plant Cell (2002) 1.59

Two callose synthases, GSL1 and GSL5, play an essential and redundant role in plant and pollen development and in fertility. Plant Mol Biol (2005) 1.47

Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa. PLoS Genet (2012) 1.37

A differential dosage hypothesis for parental effects in seed development. Plant Cell (2004) 1.37

Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Plant Biotechnol J (2004) 1.32

Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol (2011) 1.32

A toxic mutator and selection alternative to the non-Mendelian RNA cache hypothesis for hothead reversion. Plant Cell (2005) 1.30

High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling. Nucleic Acids Res (2006) 1.28

The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. Mol Plant Microbe Interact (2006) 1.28

The maternally expressed WRKY transcription factor TTG2 controls lethality in interploidy crosses of Arabidopsis. PLoS Biol (2008) 1.23

The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biol J Linn Soc Lond (2004) 1.22

Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci U S A (2012) 1.16

Dosage-dependent deregulation of an AGAMOUS-LIKE gene cluster contributes to interspecific incompatibility. Curr Biol (2009) 1.16

Cyclin-dependent kinase inhibitors in maize endosperm and their potential role in endoreduplication. Plant Physiol (2005) 1.14

The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana. Genetics (2010) 1.13

Phenotypic consequences of aneuploidy in Arabidopsis thaliana. Genetics (2010) 1.12

Stimulation of the cell cycle and maize transformation by disruption of the plant retinoblastoma pathway. Proc Natl Acad Sci U S A (2002) 1.10

Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. BMC Genomics (2012) 1.05

Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids. Nat Commun (2012) 1.03

Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners. Genome Biol (2010) 1.02

Methods for genome-wide analysis of gene expression changes in polyploids. Methods Enzymol (2005) 1.01

Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes. BMC Plant Biol (2010) 0.98

Statistical mutation calling from sequenced overlapping DNA pools in TILLING experiments. BMC Bioinformatics (2011) 0.97

The plant cell defense and Agrobacterium tumefaciens. FEMS Microbiol Lett (2005) 0.94

High-throughput TILLING for Arabidopsis. Methods Mol Biol (2006) 0.94

Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. New Phytol (2010) 0.94

Elemental profiles reflect plant adaptations to the environment. Science (2012) 0.93

Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J (2006) 0.92

Global analysis of the small RNA transcriptome in different ploidies and genomic combinations of a vertebrate complex--the Squalius alburnoides. PLoS One (2012) 0.88

Hybrid incompatibility in Arabidopsis is determined by a multiple-locus genetic network. Plant Physiol (2011) 0.88

Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana. BMC Plant Biol (2007) 0.88

Production of a high-efficiency TILLING population through polyploidization. Plant Physiol (2013) 0.86

Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific crosses. Plant Cell (2013) 0.84

Cephalopod genomics: A plan of strategies and organization. Stand Genomic Sci (2012) 0.83

A conserved and species-specific functional interaction between the Werner syndrome-like exonuclease atWEX and the Ku heterodimer in Arabidopsis. Nucleic Acids Res (2005) 0.81

The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis. Plant Cell (2014) 0.81

TILLING and ecotilling for rice. Methods Mol Biol (2013) 0.80

Parental squabbles and genome expression: lessons from the polyploids. J Biol (2009) 0.79

Forward genetics by genome sequencing reveals that rapid cyanide release deters insect herbivory of Sorghum bicolor. Genetics (2013) 0.79

Transgene-induced gene silencing is not affected by a change in ploidy level. PLoS One (2008) 0.77

Arabidopsis gulliver1/SUPERROOT2-7 identifies a metabolic basis for auxin and brassinosteroid synergy. Plant J (2014) 0.76

The passionate life of Simon Chan. Genome Biol (2013) 0.75

Tilling by sequencing. Methods Mol Biol (2015) 0.75