Published in J Mol Biol on April 05, 2007
Chromatin remodeling: insights and intrigue from single-molecule studies. Nat Struct Mol Biol (2007) 2.79
Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition. Nat Struct Mol Biol (2009) 1.58
DNA curtains and nanoscale curtain rods: high-throughput tools for single molecule imaging. Langmuir (2008) 1.39
Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping. Proc Natl Acad Sci U S A (2007) 1.31
Hed1 regulates Rad51-mediated recombination via a novel mechanism. Genes Dev (2008) 1.30
ISWI remodelers slide nucleosomes with coordinated multi-base-pair entry steps and single-base-pair exit steps. Cell (2013) 1.29
Nanofabricated racks of aligned and anchored DNA substrates for single-molecule imaging. Langmuir (2010) 1.23
Rad54, the motor of homologous recombination. DNA Repair (Amst) (2010) 1.18
Centromeric heterochromatin: the primordial segregation machine. Annu Rev Genet (2014) 1.16
Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle. Nucleic Acids Res (2008) 1.14
Parallel arrays of geometric nanowells for assembling curtains of DNA with controlled lateral dispersion. Langmuir (2008) 1.14
Functions of the Snf2/Swi2 family Rad54 motor protein in homologous recombination. Biochim Biophys Acta (2011) 1.13
Single-molecule imaging brings Rad51 nucleoprotein filaments into focus. Trends Cell Biol (2010) 1.13
Functional characterization and atomic force microscopy of a DNA repair protein conjugated to a quantum dot. Nano Lett (2008) 1.09
Structural transitions within human Rad51 nucleoprotein filaments. Proc Natl Acad Sci U S A (2009) 1.06
PICH: a DNA translocase specially adapted for processing anaphase bridge DNA. Mol Cell (2013) 0.98
Visualizing protein-DNA interactions at the single-molecule level. Curr Opin Chem Biol (2009) 0.96
Chromosome Compaction by Active Loop Extrusion. Biophys J (2016) 0.95
The importance of surfaces in single-molecule bioscience. Mol Biosyst (2008) 0.94
One small step for Mot1; one giant leap for other Swi2/Snf2 enzymes? Biochim Biophys Acta (2011) 0.93
ATP-dependent chromatin remodeling by the Saccharomyces cerevisiae homologous recombination factor Rdh54. J Biol Chem (2008) 0.91
Two-step mechanism for modifier of transcription 1 (Mot1) enzyme-catalyzed displacement of TATA-binding protein (TBP) from DNA. J Biol Chem (2012) 0.89
Functional interactions of meiotic recombination factors Rdh54 and Dmc1. DNA Repair (Amst) (2008) 0.88
Watching individual proteins acting on single molecules of DNA. Methods Enzymol (2010) 0.88
Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation. Cell Rep (2013) 0.87
Visualizing the disassembly of S. cerevisiae Rad51 nucleoprotein filaments. J Mol Biol (2009) 0.87
Molecular traffic jams on DNA. Annu Rev Biophys (2013) 0.85
Single molecule studies of homologous recombination. Mol Biosyst (2008) 0.84
Biochemistry of Meiotic Recombination: Formation, Processing, and Resolution of Recombination Intermediates. Genome Dyn Stab (2008) 0.83
Analyses of the yeast Rad51 recombinase A265V mutant reveal different in vivo roles of Swi2-like factors. Nucleic Acids Res (2011) 0.82
An archaeal Rad54 protein remodels DNA and stimulates DNA strand exchange by RadA. Nucleic Acids Res (2009) 0.82
Tid1/Rdh54 translocase is phosphorylated through a Mec1- and Rad53-dependent manner in the presence of DSB lesions in budding yeast. DNA Repair (Amst) (2013) 0.80
Characterization of the interaction between the Saccharomyces cerevisiae Rad51 recombinase and the DNA translocase Rdh54. J Biol Chem (2013) 0.78
Monitoring conformational dynamics with single-molecule fluorescence energy transfer: applications in nucleosome remodeling. Methods Enzymol (2012) 0.76
Visualizing protein movement on DNA at the single-molecule level using DNA curtains. DNA Repair (Amst) (2014) 0.76
Assembly of DNA curtains using hydrogen silsesquioxane as a barrier to lipid diffusion. Anal Chem (2012) 0.75
Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins. Cell (2004) 9.74
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Rad51 recombinase and recombination mediators. J Biol Chem (2003) 3.86
Chromatin remodelling: the industrial revolution of DNA around histones. Nat Rev Mol Cell Biol (2006) 3.79
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Total internal reflection fluorescence microscopy. Methods Cell Biol (1989) 2.89
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. Nat Struct Mol Biol (2004) 2.56
Yeast Rad54 promotes Rad51-dependent homologous DNA pairing via ATP hydrolysis-driven change in DNA double helix conformation. J Biol Chem (1999) 2.47
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Rad54, a Swi2/Snf2-like recombinational repair protein, disassembles Rad51:dsDNA filaments. Mol Cell (2002) 2.35
Characterization of the roles of the Saccharomyces cerevisiae RAD54 gene and a homologue of RAD54, RDH54/TID1, in mitosis and meiosis. Genetics (1997) 2.31
Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat Struct Biol (2003) 2.30
Tid1/Rdh54 promotes dissociation of Dmc1 from nonrecombinogenic sites on meiotic chromatin. Genes Dev (2006) 2.28
Tid1/Rdh54 promotes colocalization of rad51 and dmc1 during meiotic recombination. Proc Natl Acad Sci U S A (2000) 2.28
Superhelicity-driven homologous DNA pairing by yeast recombination factors Rad51 and Rad54. Mol Cell (2000) 2.28
DMC1 functions in a Saccharomyces cerevisiae meiotic pathway that is largely independent of the RAD51 pathway. Genetics (1997) 2.26
Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54. Nat Struct Mol Biol (2005) 2.25
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
Long-distance lateral diffusion of human Rad51 on double-stranded DNA. Proc Natl Acad Sci U S A (2006) 2.20
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
Modularity and specialization in superfamily 1 and 2 helicases. J Bacteriol (2002) 2.14
Rad54: the Swiss Army knife of homologous recombination? Nucleic Acids Res (2006) 2.09
Rad54 protein promotes branch migration of Holliday junctions. Nature (2006) 2.08
Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA molecules. Mol Cell (2006) 1.92
Direct observation of DNA distortion by the RSC complex. Mol Cell (2006) 1.89
Strand pairing by Rad54 and Rad51 is enhanced by chromatin. Genes Dev (2002) 1.74
Organized arrays of individual DNA molecules tethered to supported lipid bilayers. Langmuir (2006) 1.63
The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA. Proc Natl Acad Sci U S A (2001) 1.61
Rad54, a Jack of all trades in homologous recombination. DNA Repair (Amst) (2003) 1.60
Promotion of Rad51-dependent D-loop formation by yeast recombination factor Rdh54/Tid1. Genes Dev (2000) 1.56
Crossover interference in Saccharomyces cerevisiae requires a TID1/RDH54- and DMC1-dependent pathway. Genetics (2003) 1.34
Some disassembly required: role of DNA translocases in the disruption of recombination intermediates and dead-end complexes. Genes Dev (2006) 1.30
Terminal association of Rad54 protein with the Rad51-dsDNA filament. Proc Natl Acad Sci U S A (2006) 1.29
Yeast recombination factor Rdh54 functionally interacts with the Rad51 recombinase and catalyzes Rad51 removal from DNA. J Biol Chem (2006) 1.29
Rad54 protein stimulates the postsynaptic phase of Rad51 protein-mediated DNA strand exchange. Proc Natl Acad Sci U S A (2001) 1.26
Mechanism of eukaryotic homologous recombination. Annu Rev Biochem (2008) 8.86
DNA helicase Srs2 disrupts the Rad51 presynaptic filament. Nature (2003) 5.66
RECQL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments. Genes Dev (2007) 4.16
Crosstalk between SUMO and ubiquitin on PCNA is mediated by recruitment of the helicase Srs2p. Mol Cell (2005) 4.02
Mechanism of the ATP-dependent DNA end-resection machinery from Saccharomyces cerevisiae. Nature (2010) 2.79
Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6. Mol Cell (2007) 2.78
A double Holliday junction dissolvasome comprising BLM, topoisomerase IIIalpha, and BLAP75. J Biol Chem (2006) 2.69
Visualizing one-dimensional diffusion of proteins along DNA. Nat Struct Mol Biol (2008) 2.51
Yeast Mph1 helicase dissociates Rad51-made D-loops: implications for crossover control in mitotic recombination. Genes Dev (2009) 2.43
MHF1-MHF2, a histone-fold-containing protein complex, participates in the Fanconi anemia pathway via FANCM. Mol Cell (2010) 2.40
BLAP18/RMI2, a novel OB-fold-containing protein, is an essential component of the Bloom helicase-double Holliday junction dissolvasome. Genes Dev (2008) 2.29
Roles of ATP binding and ATP hydrolysis in human Rad51 recombinase function. DNA Repair (Amst) (2006) 2.28
Long-distance lateral diffusion of human Rad51 on double-stranded DNA. Proc Natl Acad Sci U S A (2006) 2.20
Recruitment of the recombinational repair machinery to a DNA double-strand break in yeast. Mol Cell (2003) 2.17
Visualizing one-dimensional diffusion of eukaryotic DNA repair factors along a chromatin lattice. Nat Struct Mol Biol (2010) 2.17
Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem (2003) 2.15
The yeast Hex3.Slx8 heterodimer is a ubiquitin ligase stimulated by substrate sumoylation. J Biol Chem (2007) 2.14
Recombination mediator and Rad51 targeting activities of a human BRCA2 polypeptide. J Biol Chem (2006) 2.01
Biochemical characterization of the RECQ4 protein, mutated in Rothmund-Thomson syndrome. DNA Repair (Amst) (2005) 1.88
Role of Dnl4-Lif1 in nonhomologous end-joining repair complex assembly and suppression of homologous recombination. Nat Struct Mol Biol (2007) 1.87
Homologous DNA pairing by human recombination factors Rad51 and Rad54. J Biol Chem (2002) 1.82
Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair. Proc Natl Acad Sci U S A (2012) 1.72
Human meiotic recombinase Dmc1 promotes ATP-dependent homologous DNA strand exchange. Nature (2004) 1.70
Saccharomyces cerevisiae MPH1 gene, required for homologous recombination-mediated mutation avoidance, encodes a 3' to 5' DNA helicase. J Biol Chem (2005) 1.69
Bipartite stimulatory action of the Hop2-Mnd1 complex on the Rad51 recombinase. Genes Dev (2007) 1.67
Organized arrays of individual DNA molecules tethered to supported lipid bilayers. Langmuir (2006) 1.63
Differential contributions of mammalian Rad54 paralogs to recombination, DNA damage repair, and meiosis. Mol Cell Biol (2006) 1.63
Holliday junction processing activity of the BLM-Topo IIIalpha-BLAP75 complex. J Biol Chem (2007) 1.59
Single-molecule imaging reveals mechanisms of protein disruption by a DNA translocase. Nature (2010) 1.59
Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition. Nat Struct Mol Biol (2009) 1.58
Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration. Nature (2013) 1.56
Enhancement of RAD51 recombinase activity by the tumor suppressor PALB2. Nat Struct Mol Biol (2010) 1.55
Yeast xrs2 binds DNA and helps target rad50 and mre11 to DNA ends. J Biol Chem (2003) 1.55
Regulation of meiotic recombination via Mek1-mediated Rad54 phosphorylation. Mol Cell (2009) 1.51
Cell cycle regulation of DNA double-strand break end resection by Cdk1-dependent Dna2 phosphorylation. Nat Struct Mol Biol (2011) 1.50
Promotion of homologous recombination and genomic stability by RAD51AP1 via RAD51 recombinase enhancement. Mol Cell (2007) 1.49
A comparative analysis of Dmc1 and Rad51 nucleoprotein filaments. Nucleic Acids Res (2008) 1.46
A PP4 phosphatase complex dephosphorylates RPA2 to facilitate DNA repair via homologous recombination. Nat Struct Mol Biol (2010) 1.45
53BP1, BRCA1, and the choice between recombination and end joining at DNA double-strand breaks. Mol Cell Biol (2014) 1.45
Interaction with Rad51 is indispensable for recombination mediator function of Rad52. J Biol Chem (2002) 1.45
Visualizing the assembly of human Rad51 filaments on double-stranded DNA. J Mol Biol (2006) 1.44
Role of ATP hydrolysis in the antirecombinase function of Saccharomyces cerevisiae Srs2 protein. J Biol Chem (2004) 1.43
Role of the nuclease activity of Saccharomyces cerevisiae Mre11 in repair of DNA double-strand breaks in mitotic cells. Genetics (2004) 1.43
Functional role of BLAP75 in BLM-topoisomerase IIIalpha-dependent holliday junction processing. J Biol Chem (2008) 1.43
DNA curtains and nanoscale curtain rods: high-throughput tools for single molecule imaging. Langmuir (2008) 1.39
Cerebrospinal fluid concentration of brain-derived neurotrophic factor and cognitive function in non-demented subjects. PLoS One (2009) 1.32
The E3 ubiquitin ligase RAD18 regulates ubiquitylation and chromatin loading of FANCD2 and FANCI. Blood (2011) 1.30
Hed1 regulates Rad51-mediated recombination via a novel mechanism. Genes Dev (2008) 1.30
Simultaneous atomic force microscope and fluorescence measurements of protein unfolding using a calibrated evanescent wave. Proc Natl Acad Sci U S A (2004) 1.30
Localization of recombination proteins and Srs2 reveals anti-recombinase function in vivo. J Cell Biol (2009) 1.29
Yeast recombination factor Rdh54 functionally interacts with the Rad51 recombinase and catalyzes Rad51 removal from DNA. J Biol Chem (2006) 1.29
Physical and functional interaction between the XPF/ERCC1 endonuclease and hRad52. J Biol Chem (2004) 1.29
DNA curtains for high-throughput single-molecule optical imaging. Methods Enzymol (2010) 1.29
FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress. J Cell Biol (2013) 1.28
Multiple interactions with the Rad51 recombinase govern the homologous recombination function of Rad54. J Biol Chem (2004) 1.28
FANCI binds branched DNA and is monoubiquitinated by UBE2T-FANCL. J Biol Chem (2009) 1.27
Functional cross-talk among Rad51, Rad54, and replication protein A in heteroduplex DNA joint formation. J Biol Chem (2002) 1.25
Nanofabricated racks of aligned and anchored DNA substrates for single-molecule imaging. Langmuir (2010) 1.23
The effect of algorithms on copy number variant detection. PLoS One (2010) 1.23
Functional significance of the Rad51-Srs2 complex in Rad51 presynaptic filament disruption. Nucleic Acids Res (2009) 1.21
Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity. J Biol Chem (2010) 1.19
The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion. Nat Struct Mol Biol (2012) 1.19
Nucleosome dynamics regulates DNA processing. Nat Struct Mol Biol (2013) 1.19
Direct and indirect roles of RECQL4 in modulating base excision repair capacity. Hum Mol Genet (2009) 1.18
Role for proteasome activator PA200 and postglutamyl proteasome activity in genomic stability. Proc Natl Acad Sci U S A (2008) 1.18
Molecular anatomy of the recombination mediator function of Saccharomyces cerevisiae Rad52. J Biol Chem (2008) 1.18
The Rad50 coiled-coil domain is indispensable for Mre11 complex functions. Nat Struct Mol Biol (2011) 1.16
ATPase and DNA helicase activities of the Saccharomyces cerevisiae anti-recombinase Srs2. J Biol Chem (2003) 1.16
Interaction with RPA is necessary for Rad52 repair center formation and for its mediator activity. J Biol Chem (2008) 1.15
Rad52 SUMOylation affects the efficiency of the DNA repair. Nucleic Acids Res (2010) 1.14
Parallel arrays of geometric nanowells for assembling curtains of DNA with controlled lateral dispersion. Langmuir (2008) 1.14
Overcoming natural replication barriers: differential helicase requirements. Nucleic Acids Res (2011) 1.14
Purification and assays of Saccharomyces cerevisiae homologous recombination proteins. Methods Enzymol (2006) 1.11
Molecular basis for enhancement of the meiotic DMC1 recombinase by RAD51 associated protein 1 (RAD51AP1). Proc Natl Acad Sci U S A (2011) 1.11
Differential arrangements of conserved building blocks among homologs of the Rad50/Mre11 DNA repair protein complex. J Mol Biol (2004) 1.09
Targeting cancer with a lupus autoantibody. Sci Transl Med (2012) 1.09
Effect of amino acid substitutions in the rad50 ATP binding domain on DNA double strand break repair in yeast. J Biol Chem (2004) 1.08
Structural transitions within human Rad51 nucleoprotein filaments. Proc Natl Acad Sci U S A (2009) 1.06
Polymorphisms in the myosin light chain kinase gene that confer risk of severe sepsis are associated with a lower risk of asthma. J Allergy Clin Immunol (2007) 1.05
Tension modulates actin filament polymerization mediated by formin and profilin. Proc Natl Acad Sci U S A (2013) 1.04
Multiplicity of DNA end resection machineries in chromosome break repair. Genes Dev (2009) 1.03
Crystal structures of RMI1 and RMI2, two OB-fold regulatory subunits of the BLM complex. Structure (2010) 1.03
Regulation of Rad51 recombinase presynaptic filament assembly via interactions with the Rad52 mediator and the Srs2 anti-recombinase. J Biol Chem (2009) 1.02
Single-molecule imaging of DNA curtains reveals mechanisms of KOPS sequence targeting by the DNA translocase FtsK. Proc Natl Acad Sci U S A (2012) 1.02
A variant of the breast cancer type 2 susceptibility protein (BRC) repeat is essential for the RECQL5 helicase to interact with RAD51 recombinase for genome stabilization. J Biol Chem (2012) 1.01
Cooperativity of Mus81.Mms4 with Rad54 in the resolution of recombination and replication intermediates. J Biol Chem (2009) 1.01
Processing of DNA structures via DNA unwinding and branch migration by the S. cerevisiae Mph1 protein. DNA Repair (Amst) (2011) 1.01