Published in RNA Biol on April 16, 2007
5-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res (2009) 1.85
On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci U S A (2008) 1.56
Origin and evolution of SINEs in eukaryotic genomes. Heredity (Edinb) (2011) 1.23
The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome. RNA (2011) 1.15
Use of specific chemical reagents for detection of modified nucleotides in RNA. J Nucleic Acids (2011) 0.99
An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes. Nucleic Acids Res (2009) 0.93
Translational control at the synapse: role of RNA regulators. Trends Biochem Sci (2012) 0.84
Non-protein coding RNA genes as the novel diagnostic markers for the discrimination of salmonella species using PCR. PLoS One (2015) 0.84
BC1 RNA motifs required for dendritic transport in vivo. Sci Rep (2016) 0.75
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A (2002) 7.04
The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Res (2010) 3.42
Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol (2006) 3.42
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res (2003) 2.44
Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. Trends Genet (2007) 2.00
RNomics: identification and function of small, non-messenger RNAs. Curr Opin Chem Biol (2002) 1.96
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine. Proc Natl Acad Sci U S A (2004) 1.96
Retrocopy contributions to the evolution of the human genome. BMC Genomics (2008) 1.95
Tracking marsupial evolution using archaic genomic retroposon insertions. PLoS Biol (2010) 1.89
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res (2002) 1.89
Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Curr Biol (2002) 1.85
Deletion of the MBII-85 snoRNA gene cluster in mice results in postnatal growth retardation. PLoS Genet (2007) 1.82
Alu-SINE exonization: en route to protein-coding function. Mol Biol Evol (2005) 1.81
Multiple molecular evidences for a living mammalian fossil. Proc Natl Acad Sci U S A (2007) 1.74
RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res (2003) 1.61
Evolution of small nucleolar RNAs in nematodes. Nucleic Acids Res (2006) 1.58
On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci U S A (2008) 1.56
Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds. Nat Commun (2011) 1.47
Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs). Genome Res (2007) 1.36
Mosaic retroposon insertion patterns in placental mammals. Genome Res (2009) 1.34
A truncated aminoacyl-tRNA synthetase modifies RNA. Proc Natl Acad Sci U S A (2004) 1.32
Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype. J Mol Med (Berl) (2010) 1.32
From "junk" to gene: curriculum vitae of a primate receptor isoform gene. J Mol Biol (2004) 1.30
Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP). J Mol Biol (2005) 1.29
Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes). BMC Evol Biol (2007) 1.28
Influence of phylogeny on posttranscriptional modification of rRNA in thermophilic prokaryotes: the complete modification map of 16S rRNA of Thermus thermophilus. Biochemistry (2006) 1.27
Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J Mol Biol (2002) 1.26
Exonization of transposed elements: A challenge and opportunity for evolution. Biochimie (2011) 1.23
Rodent evolution: back to the root. Mol Biol Evol (2010) 1.19
Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR. RNA (2009) 1.17
A novel class of mammalian-specific tailless retropseudogenes. Genome Res (2004) 1.13
Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs. Genome Res (2008) 1.11
Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C). J Bacteriol (2003) 1.08
Spatial codes in dendritic BC1 RNA. J Cell Biol (2006) 1.08
Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. Proc Natl Acad Sci U S A (2004) 1.07
Automated scanning for phylogenetically informative transposed elements in rodents. Syst Biol (2006) 1.06
A "gain of function" mutation in a protein mediates production of novel modified nucleosides. EMBO J (2005) 1.05
Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine. RNA (2007) 1.05
Neuronal untranslated BC1 RNA: targeted gene elimination in mice. Mol Cell Biol (2003) 1.03
Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (armadillos, anteaters, and sloths). Mol Biol Evol (2007) 1.02
A novel web-based TinT application and the chronology of the Primate Alu retroposon activity. BMC Evol Biol (2010) 1.01
Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners. Nucleic Acids Res (2006) 0.96
Retroposon insertions and the chronology of avian sex chromosome evolution. Mol Biol Evol (2011) 0.96
The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses. Nat Commun (2013) 0.93
Beyond DNA: RNA editing and steps toward Alu exonization in primates. J Mol Biol (2008) 0.92
Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era. Mol Biol Evol (2012) 0.92
A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus). Mol Biol Evol (2004) 0.90
A small RNA in testis and brain: implications for male germ cell development. J Cell Sci (2002) 0.89
A universal method for the study of CR1 retroposons in nonmodel bird genomes. Mol Biol Evol (2012) 0.89
Neuronal MAP2 mRNA: species-dependent differential dendritic targeting competence. J Mol Biol (2004) 0.86
N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA. FEBS Lett (2005) 0.85
Tandem mass spectrometry for structure assignments of wye nucleosides from transfer RNA. Nucleosides Nucleotides Nucleic Acids (2004) 0.84
Reply to Bagni: On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci U S A (2008) 0.84
Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo study. PLoS One (2007) 0.83
Retroposon insertions provide insights into deep lagomorph evolution. Mol Biol Evol (2010) 0.81
Ancestry of the Australian termitivorous numbat. Mol Biol Evol (2013) 0.80
A novel method for sequence placement of modified nucleotides in mixtures of transfer RNA. Nucleic Acids Symp Ser (Oxf) (2004) 0.80
Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids. Sci Rep (2013) 0.79
The tylosin-resistance methyltransferase RlmA(II) (TlrB) modifies the N-1 position of 23S rRNA nucleotide G748. J Mol Biol (2004) 0.78
Does the AD7c-NTP locus encode a protein? Biochim Biophys Acta (2004) 0.77
Does every transcript originate from a gene? Ann N Y Acad Sci (2015) 0.75
Corrigendum: Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids. Sci Rep (2015) 0.75