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WormBase 2007. Nucleic Acids Res (2007) 3.69

Variations on RNA folding and alignment: lessons from Benasque. J Math Biol (2007) 1.91

NONCODE v2.0: decoding the non-coding. Nucleic Acids Res (2007) 1.69

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. Genome Res (2007) 1.46

Computational RNomics of drosophilids. BMC Genomics (2007) 1.15

Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs. Genome Res (2008) 1.11

Genome-wide analyses of retrogenes derived from the human box H/ACA snoRNAs. Nucleic Acids Res (2006) 1.11

Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis. Nucleic Acids Res (2007) 1.03

Evolutionarily stable association of intronic snoRNAs and microRNAs with their host genes. Genome Biol Evol (2009) 1.01

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights. BMC Genomics (2009) 0.96

Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners. Nucleic Acids Res (2006) 0.96

Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs. BMC Genomics (2009) 0.93

In vivo analysis of Caenorhabditis elegans noncoding RNA promoter motifs. BMC Mol Biol (2008) 0.92

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs. BMC Genomics (2010) 0.91

Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility. BMC Evol Biol (2012) 0.90

Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Res (2009) 0.86

Nematode sbRNAs: homologs of vertebrate Y RNAs. J Mol Evol (2010) 0.85

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites. BMC Genomics (2009) 0.85

Animal snoRNAs and scaRNAs with exceptional structures. RNA Biol (2011) 0.84

Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters. Genetics (2008) 0.84

Treasure hunt in an amoeba: non-coding RNAs in Dictyostelium discoideum. Curr Genet (2007) 0.83

A differential sequencing-based analysis of the C. elegans noncoding transcriptome. RNA (2012) 0.82

Alternative processing as evolutionary mechanism for the origin of novel nonprotein coding RNAs. Genome Biol Evol (2013) 0.80

Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins. BMC Genomics (2008) 0.80

Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori. Nucleic Acids Res (2011) 0.79

Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny. RNA (2007) 0.79

Transduplication resulted in the incorporation of two protein-coding sequences into the turmoil-1 transposable element of C. elegans. Biol Direct (2008) 0.78

Computational prediction of Caenorhabditis box H/ACA snoRNAs using genomic properties of their host genes. RNA (2009) 0.77

Characterization of the ovine ribosomal protein SA gene and its pseudogenes. BMC Genomics (2010) 0.77

Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila. Nucleic Acids Res (2011) 0.77

A small nucleolar RNA functions in rRNA processing in Caenorhabditis elegans. Nucleic Acids Res (2010) 0.76

Structural and functional characterization of ribosomal protein gene introns in sponges. PLoS One (2012) 0.76

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification. BMC Bioinformatics (2016) 0.75

High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq. Nucleic Acids Res (2016) 0.75

Initial sequencing and analysis of the human genome. Nature (2001) 212.86

Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res (2005) 19.81

The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70

Identification of mammalian microRNA host genes and transcription units. Genome Res (2004) 14.63

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol (2003) 13.32

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res (1980) 9.50

Secondary structure prediction for aligned RNA sequences. J Mol Biol (2002) 8.80

Control of developmental timing by micrornas and their targets. Annu Rev Cell Dev Biol (2002) 7.91

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A (2002) 7.04

microRNA target predictions across seven Drosophila species and comparison to mammalian targets. PLoS Comput Biol (2005) 6.77

Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell (2002) 6.62

A computational screen for methylation guide snoRNAs in yeast. Science (1999) 6.43

RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J (2001) 5.70

A mammalian gene with introns instead of exons generating stable RNA products. Nature (1996) 4.87

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science (2005) 4.54

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc Natl Acad Sci U S A (2000) 4.54

Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. EMBO J (2002) 4.48

Small regulatory RNAs in mammals. Hum Mol Genet (2005) 4.15

Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res (2004) 2.94

Characterization of a highly variable eutherian microRNA gene. RNA (2005) 2.72

BAR DUPLICATION. Science (1936) 2.52

The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. Genome Res (2002) 2.03

Human box H/ACA pseudouridylation guide RNA machinery. Mol Cell Biol (2004) 1.85

Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Curr Biol (2002) 1.85

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res (2005) 1.77

The contribution of RNAs and retroposition to evolutionary novelties. Genetica (2003) 1.75

Multiple snoRNA gene clusters from Arabidopsis. RNA (2001) 1.62

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res (2003) 1.61

The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. Mol Cell Biol (1998) 1.56

Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA. J Biol Chem (2004) 1.10

The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa. Nucleic Acids Res (2003) 1.07

Isolation of eight novel Caenorhabditis elegans small RNAs. Gene (2004) 0.99

Location of 2(')-O-methyl nucleotides in 26S rRNA and methylation guide snoRNAs in Caenorhabditis elegans. Biochem Biophys Res Commun (2002) 0.96

Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. Gene (2005) 0.92

Ribosomal protein L25 from Trypanosoma brucei: phylogeny and molecular co-evolution of an rRNA-binding protein and its rRNA binding site. Nucleic Acids Res (1993) 0.88

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A (2002) 7.04

Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol (2006) 3.42

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res (2003) 2.44

Evolutionary history of 7SL RNA-derived SINEs in Supraprimates. Trends Genet (2007) 2.00

RNomics: identification and function of small, non-messenger RNAs. Curr Opin Chem Biol (2002) 1.96

Retrocopy contributions to the evolution of the human genome. BMC Genomics (2008) 1.95

CD303 (BDCA-2) signals in plasmacytoid dendritic cells via a BCR-like signalosome involving Syk, Slp65 and PLCgamma2. Eur J Immunol (2007) 1.90

Tracking marsupial evolution using archaic genomic retroposon insertions. PLoS Biol (2010) 1.89

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing. Nucleic Acids Res (2002) 1.89

Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. Curr Biol (2002) 1.85

Deletion of the MBII-85 snoRNA gene cluster in mice results in postnatal growth retardation. PLoS Genet (2007) 1.82

Alu-SINE exonization: en route to protein-coding function. Mol Biol Evol (2005) 1.81

Primate jumping genes elucidate strepsirrhine phylogeny. Proc Natl Acad Sci U S A (2004) 1.78

Multiple molecular evidences for a living mammalian fossil. Proc Natl Acad Sci U S A (2007) 1.74

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res (2003) 1.61

On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci U S A (2008) 1.56

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds. Nat Commun (2011) 1.47

Plasmacytoid dendritic cells: from specific surface markers to specific cellular functions. Hum Immunol (2002) 1.46

Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs). Genome Res (2007) 1.36

Mosaic retroposon insertion patterns in placental mammals. Genome Res (2009) 1.34

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype. J Mol Med (Berl) (2010) 1.32

From "junk" to gene: curriculum vitae of a primate receptor isoform gene. J Mol Biol (2004) 1.30

Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP). J Mol Biol (2005) 1.29

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes). BMC Evol Biol (2007) 1.28

Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles. J Mol Biol (2002) 1.26

Plasmacytoid dendritic cells accumulate in spleens from chronically HIV-infected patients but barely participate in interferon-alpha expression. Blood (2009) 1.24

Exonization of transposed elements: A challenge and opportunity for evolution. Biochimie (2011) 1.23

Rodent evolution: back to the root. Mol Biol Evol (2010) 1.19

Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR. RNA (2009) 1.17

A novel class of mammalian-specific tailless retropseudogenes. Genome Res (2004) 1.13

CD141+ dendritic cells produce prominent amounts of IFN-α after dsRNA recognition and can be targeted via DEC-205 in humanized mice. Blood (2013) 1.12

Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs. Genome Res (2008) 1.11

Spatial codes in dendritic BC1 RNA. J Cell Biol (2006) 1.08

Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila. Proc Natl Acad Sci U S A (2004) 1.07

Automated scanning for phylogenetically informative transposed elements in rodents. Syst Biol (2006) 1.06

Molecular cladistic markers in New World monkey phylogeny (Platyrrhini, Primates). Mol Phylogenet Evol (2003) 1.05

Neuronal untranslated BC1 RNA: targeted gene elimination in mice. Mol Cell Biol (2003) 1.03

Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis. Nucleic Acids Res (2007) 1.03

Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (armadillos, anteaters, and sloths). Mol Biol Evol (2007) 1.02

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity. BMC Evol Biol (2010) 1.01

Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners. Nucleic Acids Res (2006) 0.96

Retroposon insertions and the chronology of avian sex chromosome evolution. Mol Biol Evol (2011) 0.96

An anthropoid-specific segmental duplication on human chromosome 1q22. Genomics (2006) 0.93

The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses. Nat Commun (2013) 0.93

Beyond DNA: RNA editing and steps toward Alu exonization in primates. J Mol Biol (2008) 0.92

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era. Mol Biol Evol (2012) 0.92

BDCA-2 signaling inhibits TLR-9-agonist-induced plasmacytoid dendritic cell activation and antigen presentation. Cell Immunol (2010) 0.91

A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus). Mol Biol Evol (2004) 0.90

A small RNA in testis and brain: implications for male germ cell development. J Cell Sci (2002) 0.89

Isolation and posttranscriptional modification analysis of native BC1 RNA from mouse brain. RNA Biol (2007) 0.89

A universal method for the study of CR1 retroposons in nonmodel bird genomes. Mol Biol Evol (2012) 0.89

The syndermatan phylogeny and the evolution of acanthocephalan endoparasitism as inferred from 18S rDNA sequences. Mol Phylogenet Evol (2003) 0.89

Neuronal MAP2 mRNA: species-dependent differential dendritic targeting competence. J Mol Biol (2004) 0.86

Isolation and characterization of living primary astroglial cells using the new GLAST-specific monoclonal antibody ACSA-1. Glia (2012) 0.85

Anti-inflammatory effects of Saccharomyces boulardii mediated by myeloid dendritic cells from patients with Crohn's disease and ulcerative colitis. Am J Physiol Gastrointest Liver Physiol (2011) 0.85

Origin and subset distribution of peripheral blood dendritic cells in patients with chronic graft-versus-host disease. Transplantation (2003) 0.84

Genomic impact of eukaryotic transposable elements. Mob DNA (2012) 0.84

Reply to Bagni: On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci U S A (2008) 0.84

Frequent detection of thyroid peroxidase-specific IgG+ memory B cells in blood of patients with autoimmune thyroid disease. Eur J Immunol (2002) 0.84

Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo study. PLoS One (2007) 0.83

Memory B cells specific for the NC16A domain of the 180 kDa bullous pemphigoid autoantigen can be detected in peripheral blood of bullous pemphigoid patients and induced in vitro to synthesize autoantibodies. J Invest Dermatol (2003) 0.81

Retroposon insertions provide insights into deep lagomorph evolution. Mol Biol Evol (2010) 0.81

Ancestry of the Australian termitivorous numbat. Mol Biol Evol (2013) 0.80

Isolation and generation of clinical-grade dendritic cells using the CliniMACS system. Methods Mol Med (2005) 0.79

Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids. Sci Rep (2013) 0.79

Does the AD7c-NTP locus encode a protein? Biochim Biophys Acta (2004) 0.77

Does every transcript originate from a gene? Ann N Y Acad Sci (2015) 0.75

Corrigendum: Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids. Sci Rep (2015) 0.75