Published in EMBO J on July 12, 2007
Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet (2009) 4.57
Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet (2012) 4.04
Transgenerational epigenetic instability is a source of novel methylation variants. Science (2011) 3.66
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell (2013) 3.27
Regulation and function of DNA methylation in plants and animals. Cell Res (2011) 2.41
A transposon-induced epigenetic change leads to sex determination in melon. Nature (2009) 2.39
Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev (2008) 2.16
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J (2009) 2.00
How important are transposons for plant evolution? Nat Rev Genet (2013) 2.00
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J (2008) 1.93
Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature (2015) 1.84
Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion. Genome Res (2008) 1.68
Transgenerational epigenetic inheritance in plants. Biochim Biophys Acta (2011) 1.58
The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. Plant Physiol (2013) 1.56
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet (2009) 1.54
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Res (2011) 1.35
DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns. EMBO J (2012) 1.33
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. Genome Biol (2011) 1.31
Epialleles in plant evolution. Genome Biol (2012) 1.30
Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet (2012) 1.25
Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana. EMBO J (2009) 1.21
Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genet (2014) 1.15
GIGAS CELL1, a novel negative regulator of the anaphase-promoting complex/cyclosome, is required for proper mitotic progression and cell fate determination in Arabidopsis. Plant Cell (2011) 1.15
Epigenetic and epigenomic variation in Arabidopsis thaliana. Trends Plant Sci (2012) 1.15
RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci (2009) 1.14
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet (2010) 1.12
Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants. PLoS Genet (2012) 1.11
Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. PLoS One (2008) 1.09
Production and processing of siRNA precursor transcripts from the highly repetitive maize genome. PLoS Genet (2009) 1.04
Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences. Proc Natl Acad Sci U S A (2011) 1.04
Confining euchromatin/heterochromatin territory: jumonji crosses the line. Genes Dev (2010) 1.03
The anaphase-promoting complex is a dual integrator that regulates both MicroRNA-mediated transcriptional regulation of cyclin B1 and degradation of Cyclin B1 during Arabidopsis male gametophyte development. Plant Cell (2011) 0.99
Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species. BMC Genet (2012) 0.97
The First Rule of Plant Transposable Element Silencing: Location, Location, Location. Plant Cell (2016) 0.96
Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation. Plant Physiol (2014) 0.95
High-throughput approaches for plant epigenomic studies. Curr Opin Plant Biol (2011) 0.95
SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization. Proc Natl Acad Sci U S A (2012) 0.94
Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids. Proc Natl Acad Sci U S A (2016) 0.94
RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis. Development (2013) 0.94
Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis. PLoS Genet (2015) 0.93
Gene body DNA methylation in plants: a means to an end or an end to a means? EMBO J (2009) 0.93
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. Plant Cell (2016) 0.92
Perturbation of cell cycle regulation triggers plant immune response via activation of disease resistance genes. Proc Natl Acad Sci U S A (2013) 0.91
Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics (2010) 0.88
Mutations in EDM2 selectively affect silencing states of transposons and induce plant developmental plasticity. Sci Rep (2013) 0.87
ddm1 plants are sensitive to methyl methane sulfonate and NaCl stresses and are deficient in DNA repair. Plant Cell Rep (2012) 0.85
Metastable differentially methylated regions within Arabidopsis inbred populations are associated with modified expression of non-coding transcripts. PLoS One (2012) 0.85
Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis. J Exp Bot (2015) 0.84
Control of transposable elements in Arabidopsis thaliana. Chromosome Res (2014) 0.82
DNA methylation and demethylation in Arabidopsis. Arabidopsis Book (2008) 0.82
Signaling silence--breaking ground and spreading out. Genes Dev (2008) 0.80
Analysis of target sequences of DDM1s in Brassica rapa by MSAP. Plant Cell Rep (2010) 0.80
Identification of microRNAs and Their Target Genes Explores miRNA-Mediated Regulatory Network of Cytoplasmic Male Sterility Occurrence during Anther Development in Radish (Raphanus sativus L.). Front Plant Sci (2016) 0.78
Structural characterization of copia-type retrotransposons leads to insights into the marker development in a biofuel crop, Jatropha curcas L. Biotechnol Biofuels (2013) 0.77
Role of DNA methylation in hybrid vigor in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2016) 0.77
Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways. Plant Physiol (2016) 0.76
VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway. Epigenetics (2014) 0.76
Sustainable harvest: managing plasticity for resilient crops. Plant Biotechnol J (2014) 0.76
Molecular mechanisms of epigenetic variation in plants. Int J Mol Sci (2012) 0.76
Mechanisms underlying epigenetic regulation in Arabidopsis thaliana. Integr Comp Biol (2014) 0.76
A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation. G3 (Bethesda) (2016) 0.75
An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA. PLoS Genet (2017) 0.75
Laser Irradiation-Induced DNA Methylation Changes Are Heritable and Accompanied with Transpositional Activation of mPing in Rice. Front Plant Sci (2017) 0.75
Poplars with a PtDDM1-RNAi transgene have reduced DNA methylation and show aberrant post-dormancy morphology. Planta (2013) 0.75
The DNA methylation level against the background of the genome size and t-heterochromatin content in some species of the genus Secale L. PeerJ (2017) 0.75
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet (2003) 25.57
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell (2006) 15.24
Cytosine methylation and the ecology of intragenomic parasites. Trends Genet (1997) 13.66
Genetic and functional diversification of small RNA pathways in plants. PLoS Biol (2004) 12.21
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet (2006) 11.88
Role of transposable elements in heterochromatin and epigenetic control. Nature (2004) 10.51
The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol (2005) 10.13
Endogenous and silencing-associated small RNAs in plants. Plant Cell (2002) 10.07
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (2003) 9.54
Two classes of short interfering RNA in RNA silencing. EMBO J (2002) 8.54
Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J (2001) 7.73
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet (1998) 7.49
RNA polymerase IV directs silencing of endogenous DNA. Science (2005) 6.66
Arabidopsis thaliana DNA methylation mutants. Science (1993) 6.63
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell (2005) 6.56
RNAi-mediated pathways in the nucleus. Nat Rev Genet (2005) 6.55
Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet (2005) 6.39
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science (2001) 5.50
Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet (2005) 5.48
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (2003) 5.00
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell (2006) 4.82
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature (2001) 4.71
Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission. Proc Natl Acad Sci U S A (2003) 4.70
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet (2003) 4.70
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet (2002) 4.67
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci U S A (1996) 4.60
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev (2005) 4.50
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science (2002) 4.49
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol (2003) 4.27
Demethylation-induced developmental pleiotropy in Arabidopsis. Science (1996) 4.25
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol Cell (2000) 4.16
Arabidopsis MET1 cytosine methyltransferase mutants. Genetics (2003) 3.90
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol (2003) 3.71
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc Natl Acad Sci U S A (1996) 3.52
Canalization of development and genetic assimilation of acquired characters. Nature (1959) 3.50
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev (2001) 3.41
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev (2001) 3.27
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J (2006) 3.19
Hypermethylated SUPERMAN epigenetic alleles in arabidopsis. Science (1997) 3.14
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol (2003) 3.11
Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol (2006) 3.09
Retrotransposons as epigenetic mediators of phenotypic variation in mammals. Nat Genet (2001) 3.05
CTCF-dependent chromatin insulator is linked to epigenetic remodeling. Mol Cell (2006) 2.93
Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol (2004) 2.88
The evolutionary genetics of canalization. Q Rev Biol (2005) 2.78
Molecular model for telomeric heterochromatin in yeast. Curr Opin Cell Biol (1997) 2.73
Spreading of silent chromatin: inaction at a distance. Nat Rev Genet (2006) 2.64
HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA. EMBO J (2002) 2.64
Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr Biol (2000) 2.59
Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics (2002) 2.49
Differential expression of a new dominant agouti allele (Aiapy) is correlated with methylation state and is influenced by parental lineage. Genes Dev (1994) 2.41
The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis. Genes Dev (1998) 2.41
Paramutation: from maize to mice. Cell (2007) 2.38
Urea improves efficiency of bisulphite-mediated sequencing of 5'-methylcytosine in genomic DNA. Nucleic Acids Res (1998) 2.27
The methylated component of the Neurospora crassa genome. Nature (2003) 2.16
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana. Genetics (1999) 2.14
Epigenetic variation in Arabidopsis disease resistance. Genes Dev (2002) 2.13
PlantProm: a database of plant promoter sequences. Nucleic Acids Res (2003) 1.86
The anaphase-promoting complex: a key factor in the regulation of cell cycle. Oncogene (2005) 1.85
Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana. Plant J (1997) 1.77
Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes. Curr Biol (2002) 1.57
Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana. Genetics (1996) 1.37
The NOMEGA gene required for female gametophyte development encodes the putative APC6/CDC16 component of the Anaphase Promoting Complex in Arabidopsis. Plant J (2003) 1.27
Mnd2 and Swm1 are core subunits of the Saccharomyces cerevisiae anaphase-promoting complex. J Biol Chem (2003) 1.24
The Arabidopsis anaphase-promoting complex or cyclosome: molecular and genetic characterization of the APC2 subunit. Plant Cell (2003) 1.22
Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27. Mol Cell Biol (2004) 1.10
The value-added genome: building and maintaining genomic cytosine methylation landscapes. Curr Opin Genet Dev (2004) 1.05
Epigenetic inheritance in Arabidopsis: selective silence. Curr Opin Genet Dev (2005) 1.03
SWM1, a developmentally regulated gene, is required for spore wall assembly in Saccharomyces cerevisiae. Mol Cell Biol (1999) 0.98
Control of development and transposon movement by DNA methylation in Arabidopsis thaliana. Cold Spring Harb Symp Quant Biol (2004) 0.86
ATLN elements, LINEs from Arabidopsis thaliana: identification and characterization. DNA Res (2000) 0.83
A new class of LINEs (ATLN-L) from Arabidopsis thaliana with extraordinary structural features. DNA Res (2001) 0.78
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (2003) 5.00
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J (2002) 3.50
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol (2003) 3.11
Bursts of retrotransposition reproduced in Arabidopsis. Nature (2009) 2.50
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J (2009) 2.00
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J (2006) 1.93
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science (2008) 1.92
Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep (2009) 1.40
Differentiation of epigenetic modifications between transposons and genes. Curr Opin Plant Biol (2010) 1.28
Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1. PLoS Genet (2011) 1.27
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome. EMBO J (2010) 1.23
Evolution and control of imprinted FWA genes in the genus Arabidopsis. PLoS Genet (2008) 1.17
Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis. Genes Cells (2006) 1.06
Epigenetic memory transmission through mitosis and meiosis in plants. Semin Cell Dev Biol (2008) 1.04
HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis. Dev Cell (2011) 1.04
Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana. Genetics (2004) 1.00
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin. Nat Commun (2013) 0.97
Restriction landmark genome scanning method using isoschizomers (MspI/HpaII) for DNA methylation analysis. Electrophoresis (2006) 0.97
Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata. Genes Dev (2012) 0.92
Developmental changes in crossover frequency in Arabidopsis. Plant J (2011) 0.91
RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1. Plant J (2012) 0.90
Coexistence of trichome variation in a natural plant population: a combined study using ecological and candidate gene approaches. PLoS One (2011) 0.84
Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor. EMBO J (2013) 0.83
Control of transposable elements in Arabidopsis thaliana. Chromosome Res (2014) 0.82
Epigenetic variation in the FWA gene within the genus Arabidopsis. Plant J (2011) 0.82
Control of genic DNA methylation in Arabidopsis. J Plant Res (2010) 0.80
Ecotype-specific and chromosome-specific expansion of variant centromeric satellites in Arabidopsis thaliana. Mol Genet Genomics (2006) 0.79
Negative regulation of DNA methylation in plants. Epigenetics (2008) 0.78
DDM1 (decrease in DNA methylation) genes in rice (Oryza sativa). Mol Genet Genomics (2012) 0.78
[Control of transposons by DNA methylation and RNAi]. Tanpakushitsu Kakusan Koso (2004) 0.75
[Epigenetics in Arabidopsis thaliana]. Tanpakushitsu Kakusan Koso (2004) 0.75
[Mechanisms to control DNA methylation in Arabidopsis thaliana]. Tanpakushitsu Kakusan Koso (2008) 0.75
Biochemical analysis of long terminal repeat retrotransposons. Methods Mol Biol (2004) 0.75