Published in J Bacteriol on October 12, 2007
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Revised model for Enterococcus faecalis fsr quorum-sensing system: the small open reading frame fsrD encodes the gelatinase biosynthesis-activating pheromone propeptide corresponding to staphylococcal agrd. J Bacteriol (2006) 1.23
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High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes. Nucleic Acids Res (2007) 1.80
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Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli. J Mol Biol (2007) 1.18
Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes. Proc Natl Acad Sci U S A (2008) 1.15
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Cellular strategies for regulating functional and nonfunctional protein aggregation. Cell Rep (2012) 1.08
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The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. Genome Res (2009) 1.06
Network-based approaches for linking metabolism with environment. Genome Biol (2008) 1.06
Fcγ receptor I alpha chain (CD64) expression in macrophages is critical for the onset of meningitis by Escherichia coli K1. PLoS Pathog (2010) 1.01
Dissecting ensemble networks in ES cell populations reveals micro-heterogeneity underlying pluripotency. Mol Biosyst (2012) 0.98
DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Mol Cell (2012) 0.97
A complex network framework for unbiased statistical analyses of DNA-DNA contact maps. Nucleic Acids Res (2012) 0.95
Epithelial organisation revealed by a network of cellular contacts. Nat Commun (2011) 0.95
Human inositol polyphosphate multikinase regulates transcript-selective nuclear mRNA export to preserve genome integrity. Mol Cell (2013) 0.92
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Evolutionary selection for protein aggregation. Biochem Soc Trans (2012) 0.89
Evolution. The hidden codes that shape protein evolution. Science (2013) 0.89
Solitary and repetitive binding motifs for the AP2 complex alpha-appendage in amphiphysin and other accessory proteins. J Biol Chem (2007) 0.88
Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region. Nature (2016) 0.87
Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells. Curr Opin Cell Biol (2012) 0.87
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions. BMC Syst Biol (2009) 0.86
Transcriptional control of the quorum sensing response in yeast. Mol Biosyst (2009) 0.85
Exploring the environmental preference of weak interactions in (alpha/beta)8 barrel proteins. Proteins (2006) 0.79
Investigations on C-H...pi interactions in RNA binding proteins. Int J Biol Macromol (2007) 0.78
The efficiency of mitochondrial electron transport chain is increased in the long-lived mrg19 Saccharomyces cerevisiae. Aging Cell (2009) 0.78
Spial: analysis of subtype-specific features in multiple sequence alignments of proteins. Bioinformatics (2010) 0.78
Registering alpha-helices and beta-strands using backbone C-H...O interactions. Proteins (2003) 0.78
Predicting the strongest domain-domain contact in interacting protein pairs. Stat Appl Genet Mol Biol (2006) 0.78
Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease. Mol Cell Proteomics (2011) 0.77
Transcript stability in the protein interaction network of Escherichia coli. Mol Biosyst (2008) 0.77
Nanobiotechnology: Scaling up synthetic gene circuits. Nat Nanotechnol (2010) 0.76
Deciphering membrane protein structures from protein sequences. Genome Biol (2012) 0.76
Intrinsically disordered proteins. Mol Biosyst (2011) 0.76
Network Biology editorial 2013. Mol Biosyst (2013) 0.75
Classifying pairs with trees for supervised biological network inference. Mol Biosyst (2015) 0.75
A methodology to infer gene networks from spatial patterns of expression--an application to fluorescence in situ hybridization images. Mol Biosyst (2013) 0.75
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Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements. Methods (2009) 0.75
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GenCompass: a universal system for analysing gene expression for any genome. Trends Biotechnol (2004) 0.75