Published in Proc Natl Acad Sci U S A on December 05, 2007
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High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution. PLoS Genet (2008) 1.60
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Molecular evolution, functional variation, and proposed nomenclature of the gene family that includes sphingomyelinase D in sicariid spider venoms. Mol Biol Evol (2008) 1.09
A comparison of reptilian and avian olfactory receptor gene repertoires: species-specific expansion of group gamma genes in birds. BMC Genomics (2009) 1.01
Epigenetics and the evolution of Darwin's Finches. Genome Biol Evol (2014) 1.00
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More functional V1R genes occur in nest-living and nocturnal terricolous mammals. Genome Biol Evol (2010) 0.83
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Correlated evolution among six gene families in Drosophila revealed by parallel change of gene numbers. Genome Biol Evol (2011) 0.81
Genomic drift and copy number variation of chemosensory receptor genes in humans and mice. Cytogenet Genome Res (2009) 0.81
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Genetics of canine olfaction and receptor diversity. Mamm Genome (2011) 0.81
Comparative genomics and evolution of the alpha-defensin multigene family in primates. Mol Biol Evol (2010) 0.80
Strong links between genomic and anatomical diversity in both mammalian olfactory chemosensory systems. Proc Biol Sci (2014) 0.80
Unravelling the complexity of human olfactory receptor repertoire by copy number analysis across population using high resolution arrays. PLoS One (2013) 0.79
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Homo sapiens exhibit a distinct pattern of CNV genes regulation: an important role of miRNAs and SNPs in expression plasticity. Sci Rep (2015) 0.78
Molecular trajectories leading to the alternative fates of duplicate genes. PLoS One (2012) 0.77
Novel population specific autosomal copy number variation and its functional analysis amongst Negritos from Peninsular Malaysia. PLoS One (2014) 0.77
The microevolution of V1r vomeronasal receptor genes in mice. Genome Biol Evol (2011) 0.77
Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum. Mol Genet Genomics (2014) 0.77
Functional requirements driving the gene duplication in 12 Drosophila species. BMC Genomics (2013) 0.77
Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol (2015) 0.77
Biological implication for loss of function at major histocompatibility complex loci. Immunogenetics (2008) 0.77
Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle. PLoS One (2016) 0.77
Identification of a uniquely expanded V1R (ORA) gene family in the Japanese grenadier anchovy (Coilia nasus). Mar Biol (2016) 0.76
The Genetic Basis of Primate Behavior: Genetics and Genomics in Field-Based Primatology. Int J Primatol (2014) 0.76
Detecting negative selection on recurrent mutations using gene genealogy. BMC Genet (2013) 0.75
Ultra Large Gene Families: A Matter of Adaptation or Genomic Parasites? Life (Basel) (2016) 0.75
Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated. Elife (2017) 0.75
Identification of Copy Number Variations in Xiang and Kele Pigs. PLoS One (2016) 0.75
Selection to Increase Expression, not Sequence Diversity, Precedes Gene Family Origin and Expansion in Rattlesnake Venom. Genetics (2017) 0.75
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Initial sequencing and analysis of the human genome. Nature (2001) 212.86
Global variation in copy number in the human genome. Nature (2006) 57.50
Detection of large-scale variation in the human genome. Nat Genet (2004) 49.18
The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature (2001) 42.18
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2005) 37.39
Large-scale copy number polymorphism in the human genome. Science (2004) 34.64
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Fine-scale structural variation of the human genome. Nat Genet (2005) 24.31
Mitochondrial DNA and human evolution. Nature (1987) 22.33
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African populations and the evolution of human mitochondrial DNA. Science (1991) 18.08
A high-resolution survey of deletion polymorphism in the human genome. Nat Genet (2005) 16.99
A comprehensive analysis of common copy-number variations in the human genome. Am J Hum Genet (2006) 8.61
Genome assembly comparison identifies structural variants in the human genome. Nat Genet (2006) 6.93
Bias of selection on human copy-number variants. PLoS Genet (2006) 4.44
Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability. Nat Rev Genet (2007) 3.98
Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome. Proc Natl Acad Sci U S A (2007) 3.35
Genetic variation in a human odorant receptor alters odour perception. Nature (2007) 3.30
Human genome sequence variation and the influence of gene history, mutation and recombination. Nat Genet (2002) 3.24
Olfaction: diverse species, conserved principles. Neuron (2005) 2.57
Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. PLoS Biol (2004) 2.56
Extensive gains and losses of olfactory receptor genes in mammalian evolution. PLoS One (2007) 2.35
Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci U S A (2005) 2.32
Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proc Natl Acad Sci U S A (2003) 2.14
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The new mutation theory of phenotypic evolution. Proc Natl Acad Sci U S A (2007) 1.97
Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet (2006) 1.94
Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Res (2007) 1.85
Hox clusters as models for vertebrate genome evolution. Trends Genet (2005) 1.75
Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proc Natl Acad Sci U S A (2006) 1.72
A comparison of the human and chimpanzee olfactory receptor gene repertoires. Genome Res (2005) 1.70
Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs. Genome Res (2005) 1.62
Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proc Natl Acad Sci U S A (2007) 1.48
Molecular evolution of Drosophila odorant receptor genes. Mol Biol Evol (2007) 1.38
Relaxation of selective constraint and loss of function in the evolution of human bitter taste receptor genes. Hum Mol Genet (2004) 1.38
Evolutionary change of the numbers of homeobox genes in bilateral animals. Mol Biol Evol (2005) 1.37
Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates. Genetics (2005) 1.31
Three sweet receptor genes are clustered in human chromosome 1. Mamm Genome (2003) 0.92
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
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Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A (2004) 20.53
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Estimation of divergence times for major lineages of primate species. Mol Biol Evol (2003) 3.52
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol Biol Evol (2009) 2.68
Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci U S A (2002) 2.63
Extensive gains and losses of olfactory receptor genes in mammalian evolution. PLoS One (2007) 2.35
Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci U S A (2005) 2.32
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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
Evolution of olfactory receptor genes in the human genome. Proc Natl Acad Sci U S A (2003) 1.97
Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.). BMC Genomics (2010) 1.96
Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet (2006) 1.94
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A (2009) 1.94
Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proc Natl Acad Sci U S A (2002) 1.79
Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proc Natl Acad Sci U S A (2006) 1.72
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proc Natl Acad Sci U S A (2009) 1.70
False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol Evol (2004) 1.64
Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proc Natl Acad Sci U S A (2004) 1.62
Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene (2005) 1.55
Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Mol Biol Evol (2002) 1.50
Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Mol Biol Evol (2002) 1.50
Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proc Natl Acad Sci U S A (2007) 1.48
Evolutionary change of the numbers of homeobox genes in bilateral animals. Mol Biol Evol (2005) 1.37
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Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene (2004) 1.32
Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol (2010) 1.31
Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian trees. J Mol Evol (2003) 1.30
Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Mol Biol Evol (2003) 1.24
Heterogeneous but conserved natural killer receptor gene complexes in four major orders of mammals. Proc Natl Acad Sci U S A (2006) 1.21
Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA. Genetics (2008) 1.20
Origins and evolution of microRNA genes in plant species. Genome Biol Evol (2012) 1.20
Origin and evolution of influenza virus hemagglutinin genes. Mol Biol Evol (2002) 1.19
Independent domestication of Asian rice followed by gene flow from japonica to indica. Mol Biol Evol (2011) 1.19
Concerted and nonconcerted evolution of the Hsp70 gene superfamily in two sibling species of nematodes. Mol Biol Evol (2003) 1.17
Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Mol Biol Evol (2003) 1.11
The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution. Nucleic Acids Res (2007) 1.10
Purifying selection and birth-and-death evolution in the histone H4 gene family. Mol Biol Evol (2002) 1.09
Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates. Immunogenetics (2008) 1.09
Rapid expansion of killer cell immunoglobulin-like receptor genes in primates and their coevolution with MHC Class I genes. Gene (2005) 1.09
Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers. Proc Natl Acad Sci U S A (2008) 1.05
Origins and evolution of the formin multigene family that is involved in the formation of actin filaments. Mol Biol Evol (2008) 1.03
Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat. BMC Genomics (2013) 1.01
A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy. DNA Res (2013) 0.98
Ultraconserved coding regions outside the homeobox of mammalian Hox genes. BMC Evol Biol (2008) 0.98
Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues. Immunogenetics (2005) 0.98
Adaptive evolution of variable region genes encoding an unusual type of immunoglobulin in camelids. Mol Biol Evol (2002) 0.97
Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication. Immunogenetics (2004) 0.96
Origin and evolution of the chicken leukocyte receptor complex. Proc Natl Acad Sci U S A (2005) 0.95
Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction. BMC Plant Biol (2012) 0.95
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Unique transcriptome patterns of the white and grey matter corroborate structural and functional heterogeneity in the human frontal lobe. PLoS One (2013) 0.91
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Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biol Evol (2010) 0.88
Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles. Plant Mol Biol (2013) 0.87
Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Mol Biol Evol (2010) 0.86
Genomic drift and evolution of microsatellite DNAs in human populations. Mol Biol Evol (2009) 0.85
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Catalytic reaction mechanism of goose egg-white lysozyme by molecular modelling of enzyme-substrate complex. J Biochem (2008) 0.83
A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes. Nucleic Acids Res (2005) 0.79
Eighty percent of proteins are different between humans and chimpanzees. Gene (2005) 0.79
Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Mol Immunol (2009) 0.79
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Is positive selection responsible for the evolution of a duplicate UV-sensitive opsin gene in Heliconius butterflies? Proc Natl Acad Sci U S A (2010) 0.78
Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila. J Mol Evol (2013) 0.78
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Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations. Proc Natl Acad Sci U S A (2013) 0.75
Germinoma with syncytiotrophoblastic giant cells recurring 13 years after radiotherapy for a pineal germinoma--case report. Neurol Med Chir (Tokyo) (2003) 0.75
Evaluation of a practical training program for drug information services for fifth-year pharmacy students in a hospital. Yakugaku Zasshi (2011) 0.75