Published in ISME J on April 10, 2008
Diversity, stability and resilience of the human gut microbiota. Nature (2012) 9.09
The impact of the gut microbiota on human health: an integrative view. Cell (2012) 6.01
The gut microbiota in IBD. Nat Rev Gastroenterol Hepatol (2012) 3.88
16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis. ISME J (2009) 3.75
Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease. Cell Host Microbe (2011) 3.46
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol (2011) 3.11
The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology (2014) 2.73
Disordered microbial communities in the upper respiratory tract of cigarette smokers. PLoS One (2010) 2.60
Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio (2010) 2.53
Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases. Curr Opin Infect Dis (2009) 2.44
Meta-analyses of studies of the human microbiota. Genome Res (2013) 2.35
Metabolomics reveals metabolic biomarkers of Crohn's disease. PLoS One (2009) 2.35
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. Genome Res (2010) 2.21
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One (2011) 2.18
Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice. PLoS One (2010) 2.14
Stressor exposure disrupts commensal microbial populations in the intestines and leads to increased colonization by Citrobacter rodentium. Infect Immun (2010) 2.06
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS One (2012) 1.84
Microbes inside--from diversity to function: the case of Akkermansia. ISME J (2012) 1.80
Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing. PLoS One (2010) 1.79
The human microbiome and its potential importance to pediatrics. Pediatrics (2012) 1.74
Role of the gut microbiota in defining human health. Expert Rev Anti Infect Ther (2010) 1.73
Influence of fecal sample storage on bacterial community diversity. Open Microbiol J (2009) 1.68
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PLoS One (2012) 1.66
Sewage reflects the microbiomes of human populations. MBio (2015) 1.64
Intestinal microbiota in human health and disease: the impact of probiotics. Genes Nutr (2011) 1.63
The intestinal microbiota in health and disease: the influence of microbial products on immune cell homeostasis. Curr Opin Gastroenterol (2009) 1.57
The function of our microbiota: who is out there and what do they do? Front Cell Infect Microbiol (2012) 1.54
Molecular analysis of the luminal- and mucosal-associated intestinal microbiota in diarrhea-predominant irritable bowel syndrome. Am J Physiol Gastrointest Liver Physiol (2011) 1.49
Th17 cells in immunity and autoimmunity. Clin Dev Immunol (2013) 1.40
Inflammatory bowel disease as a model for translating the microbiome. Immunity (2014) 1.39
Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers. DNA Res (2013) 1.38
Helminth colonization is associated with increased diversity of the gut microbiota. PLoS Negl Trop Dis (2014) 1.35
Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J (2012) 1.34
Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome. Nat Microbiol (2016) 1.29
Inflammation drives dysbiosis and bacterial invasion in murine models of ileal Crohn's disease. PLoS One (2012) 1.28
The role of bacteria and pattern-recognition receptors in Crohn's disease. Nat Rev Gastroenterol Hepatol (2011) 1.27
Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis. J Gastroenterol (2011) 1.23
Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut. PLoS One (2010) 1.22
The role of mucosal immunity and host genetics in defining intestinal commensal bacteria. Curr Opin Gastroenterol (2010) 1.15
Altering host resistance to infections through microbial transplantation. PLoS One (2011) 1.12
Strategies for metagenomic-guided whole-community proteomics of complex microbial environments. PLoS One (2011) 1.09
Probiotics, prebiotics and immunomodulation of gut mucosal defences: homeostasis and immunopathology. Nutrients (2013) 1.08
The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease. Cell Host Microbe (2014) 1.08
Seasonal variation in human gut microbiome composition. PLoS One (2014) 1.06
Characteristics of fecal and mucosa-associated microbiota in Chinese patients with inflammatory bowel disease. Medicine (Baltimore) (2014) 1.03
Cross-sectional and longitudinal comparisons of the predominant fecal microbiota compositions of a group of pediatric patients with cystic fibrosis and their healthy siblings. Appl Environ Microbiol (2011) 1.01
Biofilm formation as a novel phenotypic feature of adherent-invasive Escherichia coli (AIEC). BMC Microbiol (2009) 1.01
Dysregulation of human beta-defensin-2 protein in inflammatory bowel disease. PLoS One (2009) 1.01
Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome. Comput Struct Biotechnol J (2015) 1.00
Disrupted intestinal microbiota and intestinal inflammation in children with cystic fibrosis and its restoration with Lactobacillus GG: a randomised clinical trial. PLoS One (2014) 0.96
Lactobacillus reuteri maintains a functional mucosal barrier during DSS treatment despite mucus layer dysfunction. PLoS One (2012) 0.95
Inclusion of chicory (Cichorium intybus L.) in pigs' diets affects the intestinal microenvironment and the gut microbiota. Appl Environ Microbiol (2012) 0.95
Discerning the role of Bacteroides fragilis in celiac disease pathogenesis. Appl Environ Microbiol (2012) 0.94
Genome-Wide Association Studies of the Human Gut Microbiota. PLoS One (2015) 0.93
The gut microbiota and liver disease. Cell Mol Gastroenterol Hepatol (2015) 0.93
Microbes, the gut and ankylosing spondylitis. Arthritis Res Ther (2013) 0.93
Intestinal microbiota, probiotics and prebiotics in inflammatory bowel disease. World J Gastroenterol (2014) 0.92
Role of glycoside phosphorylases in mannose foraging by human gut bacteria. J Biol Chem (2013) 0.91
Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Appl Environ Microbiol (2013) 0.90
Emerging Insights into Antibiotic-Associated Diarrhea and Clostridium difficile Infection through the Lens of Microbial Ecology. Interdiscip Perspect Infect Dis (2008) 0.89
Recent advances in characterizing the gastrointestinal microbiome in Crohn's disease: a systematic review. Inflamm Bowel Dis (2015) 0.87
Novel players in inflammatory bowel disease pathogenesis. Curr Gastroenterol Rep (2012) 0.87
Metabolomics as a diagnostic tool in gastroenterology. World J Gastrointest Pharmacol Ther (2013) 0.87
Susceptibility to Campylobacter infection is associated with the species composition of the human fecal microbiota. MBio (2014) 0.86
Association of obesity with serum leptin, adiponectin, and serotonin and gut microflora in beagle dogs. J Vet Intern Med (2014) 0.86
Tools for the tract: understanding the functionality of the gastrointestinal tract. Therap Adv Gastroenterol (2009) 0.86
Retracted Human gut microbiota: dysbiosis and manipulation. Front Cell Infect Microbiol (2012) 0.85
The role of the immune system in regulating the microbiota. Gut Microbes (2010) 0.85
Ecological characterization of the colonic microbiota of normal and diarrheic dogs. Interdiscip Perspect Infect Dis (2009) 0.85
O-desmethylangolensin: the importance of equol's lesser known cousin to human health. Adv Nutr (2011) 0.85
Evaluation of an oral subchronic exposure of deoxynivalenol on the composition of human gut microbiota in a model of human microbiota-associated rats. PLoS One (2013) 0.84
The Gut Microbiota in Immune-Mediated Inflammatory Diseases. Front Microbiol (2016) 0.84
The human microbiota: the rise of an "empire". Rambam Maimonides Med J (2015) 0.83
Association of gut microbiota with post-operative clinical course in Crohn's disease. BMC Gastroenterol (2013) 0.83
Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health. Front Microbiol (2016) 0.83
Gut Microbiota Modification: Another Piece in the Puzzle of the Benefits of Physical Exercise in Health? Front Physiol (2016) 0.82
Galacto-oligosaccharides attenuate renal injury with microbiota modification. Physiol Rep (2014) 0.82
Mucosal Interactions between Genetics, Diet, and Microbiome in Inflammatory Bowel Disease. Front Immunol (2016) 0.82
NOD-like receptors in intestinal homeostasis and epithelial tissue repair. Int J Mol Sci (2014) 0.82
Small bowel resection induces long-term changes in the enteric microbiota of mice. J Gastrointest Surg (2014) 0.81
Proneness of TLR5 deficient mice to develop colitis is microbiota dependent. Gut Microbes (2015) 0.81
Mechanisms of Microbe-Host Interaction in Crohn's Disease: Dysbiosis vs. Pathobiont Selection. Front Immunol (2015) 0.80
Determining microbial products and identifying molecular targets in the human microbiome. Cell Metab (2014) 0.80
The Fecal Microbiome in Pediatric Patients With Short Bowel Syndrome. JPEN J Parenter Enteral Nutr (2015) 0.79
Heat Shock Proteins: Intestinal Gatekeepers that Are Influenced by Dietary Components and the Gut Microbiota. Pathogens (2014) 0.78
Are infants born by elective cesarean delivery without labor at risk for developing immune disorders later in life? Am J Obstet Gynecol (2012) 0.78
Comparison of Fecal Microbiota between German Holstein Dairy Cows with and without Left-Sided Displacement of the Abomasum. J Clin Microbiol (2016) 0.78
Exploring the origins of asthma: Lessons from twin studies. Eur Clin Respir J (2014) 0.78
Chicory (Cichorium intybus L.) and cereals differently affect gut development in broiler chickens and young pigs. J Anim Sci Biotechnol (2013) 0.78
Comparison of Gut Microbiota between Sasang Constitutions. Evid Based Complement Alternat Med (2013) 0.77
Correlations of Host Genetics and Gut Microbiome Composition. Front Microbiol (2016) 0.77
The Effects of Bowel Preparation on Microbiota-Related Metrics Differ in Health and in Inflammatory Bowel Disease and for the Mucosal and Luminal Microbiota Compartments. Clin Transl Gastroenterol (2016) 0.77
Effect of dietary prebiotic (mannan oligosaccharide) supplementation on the caecal bacterial community structure of turkeys. Microb Ecol (2012) 0.77
Pyrosequencing of Plaque Microflora In Twin Children with Discordant Caries Phenotypes. PLoS One (2015) 0.76
Involvement of Reduced Microbial Diversity in Inflammatory Bowel Disease. Gastroenterol Res Pract (2016) 0.76
Agent Based Modeling of Human Gut Microbiome Interactions and Perturbations. PLoS One (2016) 0.76
Exome sequencing identifies novel compound heterozygous IFNA4 and IFNA10 mutations as a cause of impaired function in Crohn's disease patients. Sci Rep (2015) 0.76
Gut Microbial Diversity Is Reduced in Smokers with Crohn's Disease. Inflamm Bowel Dis (2016) 0.75
Mycobacterium avium Subspecies paratuberculosis Infection Modifies Gut Microbiota under Different Dietary Conditions in a Rabbit Model. Front Microbiol (2016) 0.75
Safety of Bifidobacterium animalis Subsp. Lactis (B. lactis) Strain BB-12-Supplemented Yogurt in Healthy Children. J Pediatr Gastroenterol Nutr (2017) 0.75
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nat Genet (2010) 17.38
Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One (2008) 14.63
DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community. Appl Environ Microbiol (1988) 13.80
Diversity, stability and resilience of the human gut microbiota. Nature (2012) 9.09
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. Nat Genet (2011) 7.98
Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (2010) 6.73
DNA methylation profiles in monozygotic and dizygotic twins. Nat Genet (2009) 5.99
Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease. Nat Genet (2011) 5.58
CARD15/NOD2 mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease. Am J Hum Genet (2002) 5.31
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology (2010) 5.29
The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. Gastroenterology (2007) 5.04
Genome-wide association identifies multiple ulcerative colitis susceptibility loci. Nat Genet (2010) 4.65
Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. J Clin Gastroenterol (2010) 4.52
Low diversity of the gut microbiota in infants with atopic eczema. J Allergy Clin Immunol (2011) 4.10
Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME J (2007) 3.92
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature (2011) 3.80
Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology (2010) 3.68
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One (2010) 3.45
Shotgun metaproteomics of the human distal gut microbiota. ISME J (2008) 3.43
Resequencing of positional candidates identifies low frequency IL23R coding variants protecting against inflammatory bowel disease. Nat Genet (2010) 3.22
Long-term persistence of resistant Enterococcus species after antibiotics to eradicate Helicobacter pylori. Ann Intern Med (2003) 3.04
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflamm Bowel Dis (2009) 2.85
Tackling soil diversity with the assembly of large, complex metagenomes. Proc Natl Acad Sci U S A (2014) 2.65
Helicobacter pylori infection and gastric atrophy: risk of adenocarcinoma and squamous-cell carcinoma of the esophagus and adenocarcinoma of the gastric cardia. J Natl Cancer Inst (2004) 2.63
Appendectomy is followed by increased risk of Crohn's disease. Gastroenterology (2003) 2.62
The Earth Microbiome project: successes and aspirations. BMC Biol (2014) 2.58
Inflammatory bowel disease in a Swedish twin cohort: a long-term follow-up of concordance and clinical characteristics. Gastroenterology (2003) 2.57
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J (2012) 2.45
Meta-analyses of studies of the human microbiota. Genome Res (2013) 2.35
Metabolomics reveals metabolic biomarkers of Crohn's disease. PLoS One (2009) 2.35
High prevalence of gastroesophageal reflux symptoms and esophagitis with or without symptoms in the general adult Swedish population: a Kalixanda study report. Scand J Gastroenterol (2005) 2.13
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. ISME J (2011) 2.10
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut (2013) 2.04
Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol Biol Evol (2008) 1.95
Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth. Environ Microbiol (2006) 1.88
Geographical variability and environmental risk factors in inflammatory bowel disease. Gut (2013) 1.84
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS One (2012) 1.84
Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies. Gastroenterology (2013) 1.83
Environmental factors in inflammatory bowel disease: a co-twin control study of a Swedish-Danish twin population. Inflamm Bowel Dis (2006) 1.73
A full-coverage, high-resolution human chromosome 22 genomic microarray for clinical and research applications. Hum Mol Genet (2002) 1.69
SabA is the H. pylori hemagglutinin and is polymorphic in binding to sialylated glycans. PLoS Pathog (2006) 1.68
Natural history and outcome in 32 Swedish patients with small duct primary sclerosing cholangitis (PSC). J Hepatol (2002) 1.67
Peptic ulcer disease in a general adult population: the Kalixanda study: a random population-based study. Am J Epidemiol (2006) 1.64
Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls. J Med Microbiol (2009) 1.64
Soft inertial microfluidics for high throughput separation of bacteria from human blood cells. Lab Chip (2009) 1.63
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol (2012) 1.58
Diversity of the protein disulfide isomerase family: identification of breast tumor induced Hag2 and Hag3 as novel members of the protein family. Mol Phylogenet Evol (2005) 1.44
Effect of esomeprazole triple therapy on eradication rates of Helicobacter pylori, gastric ulcer healing and prevention of relapse in gastric ulcer patients. Eur J Gastroenterol Hepatol (2008) 1.42
Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes. J Antimicrob Chemother (2006) 1.40
Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. Proc Natl Acad Sci U S A (2008) 1.37
Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis. PLoS Genet (2013) 1.34
Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun (2003) 1.32
Rapid detection of rifampin resistance in Mycobacterium tuberculosis by Pyrosequencing technology. J Clin Microbiol (2006) 1.31
Impact of phenolic substrate and growth temperature on the Arthrobacter chlorophenolicus proteome. J Proteome Res (2009) 1.31
Macrolide resistance in the normal microbiota after Helicobacter pylori treatment. Scand J Infect Dis (2007) 1.27
Combined polymorphisms in genes encoding the inflammasome components NALP3 and CARD8 confer susceptibility to Crohn's disease in Swedish men. Am J Gastroenterol (2009) 1.26
A negative Helicobacter pylori serology test is more reliable for exclusion of premalignant gastric conditions than a negative test for current H. pylori infection: a report on histology and H. pylori detection in the general adult population. Scand J Gastroenterol (2005) 1.26
Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa. Int J Syst Evol Microbiol (2005) 1.26
Titration-free massively parallel pyrosequencing using trace amounts of starting material. Nucleic Acids Res (2010) 1.25
CD98 expression modulates intestinal homeostasis, inflammation, and colitis-associated cancer in mice. J Clin Invest (2011) 1.23
Phylogenetic analyses and expression studies reveal two distinct groups of calreticulin isoforms in higher plants. Plant Physiol (2003) 1.23
Impaired mucus-bicarbonate barrier in Helicobacter pylori-infected mice. Am J Physiol Gastrointest Liver Physiol (2006) 1.23
Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles. Appl Environ Microbiol (2007) 1.23
Concordance of Helicobacter pylori strains within families. J Clin Microbiol (2003) 1.22
Composition of the vaginal microbiota in women of reproductive age--sensitive and specific molecular diagnosis of bacterial vaginosis is possible? PLoS One (2013) 1.21
Correlation of the Helicobacter pylori adherence factor BabA with duodenal ulcer disease in four European countries. FEMS Immunol Med Microbiol (2005) 1.21
Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism. Appl Environ Microbiol (2005) 1.21
Use of bromodeoxyuridine immunocapture to identify active bacteria associated with arbuscular mycorrhizal hyphae. Appl Environ Microbiol (2003) 1.20
Intestinal microbial profiles in extremely preterm infants with and without necrotizing enterocolitis. Acta Paediatr (2012) 1.20
DNA-level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh. J Clin Microbiol (2003) 1.18
Free-living amoebae promote growth and survival of Helicobacter pylori. Scand J Infect Dis (2002) 1.15
Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin. Arch Dermatol Res (2011) 1.14
Granulocyte, monocyte/macrophage apheresis for inflammatory bowel disease: the first 100 patients treated in Scandinavia. Scand J Gastroenterol (2007) 1.14
Serum biomarkers provide an accurate method for diagnosis of atrophic gastritis in a general population: The Kalixanda study. Scand J Gastroenterol (2008) 1.14