Published in J Mol Biol on March 06, 2008
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RNA folding pathways and kinetics using 2D energy landscapes. J Math Biol (2014) 0.77
Four RNA families with functional transient structures. RNA Biol (2015) 0.76
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RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (2007) 18.59
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The Vienna RNA websuite. Nucleic Acids Res (2008) 9.02
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The primary transcriptome of the major human pathogen Helicobacter pylori. Nature (2010) 7.70
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Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol (2010) 5.39
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Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. Nat Biotechnol (2009) 5.13
tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Res (2008) 4.88
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RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics (2008) 3.29
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The expansion of the metazoan microRNA repertoire. BMC Genomics (2006) 2.80
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Memory efficient folding algorithms for circular RNA secondary structures. Bioinformatics (2006) 2.77
Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol Biol (2006) 2.74
Structured RNAs in the ENCODE selected regions of the human genome. Genome Res (2007) 2.69
The impact of target site accessibility on the design of effective siRNAs. Nat Biotechnol (2008) 2.51
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Alignment of RNA base pairing probability matrices. Bioinformatics (2004) 2.42
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome. Genome Res (2012) 2.13
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. Nucleic Acids Res (2008) 2.10
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing. Nat Genet (2012) 2.07
Variations on RNA folding and alignment: lessons from Benasque. J Math Biol (2007) 1.91
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A survey of nematode SmY RNAs. RNA Biol (2009) 1.85
Conserved RNA secondary structures in Flaviviridae genomes. J Gen Virol (2004) 1.81
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RNAcentral: A vision for an international database of RNA sequences. RNA (2011) 1.73
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks. Bioinformatics (2006) 1.61
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection. Genome Biol (2014) 1.60
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Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinformatics (2009) 1.55
Structure and formation of ant transportation networks. J R Soc Interface (2011) 1.55
The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts. Mol Biol Evol (2005) 1.54
SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics (2007) 1.51
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs. RNA (2012) 1.51
Evolutionary patterns of non-coding RNAs. Theory Biosci (2005) 1.49
Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks. PLoS Genet (2013) 1.48
Independent Hox-cluster duplications in lampreys. J Exp Zool B Mol Dev Evol (2003) 1.48
Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information. Theory Biosci (2005) 1.47
Visualization of barrier tree sequences. IEEE Trans Vis Comput Graph (2006) 1.45
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data. RNA (2011) 1.42
Genomic and morphological evidence converge to resolve the enigma of Strepsiptera. Curr Biol (2012) 1.40
RNAs everywhere: genome-wide annotation of structured RNAs. J Exp Zool B Mol Dev Evol (2007) 1.38