Published in Genes Nutr on February 03, 2010
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. Theor Appl Genet (2013) 2.75
User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org. Nucleic Acids Res (2013) 1.35
Molecular nutrition research: the modern way of performing nutritional science. Nutrients (2012) 1.18
The Micronutrient Genomics Project: a community-driven knowledge base for micronutrient research. Genes Nutr (2010) 1.06
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics (2015) 1.03
A Database of Gene-Environment Interactions Pertaining to Blood Lipid Traits, Cardiovascular Disease and Type 2 Diabetes. J Data Mining Genomics Proteomics (2011) 0.98
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. BMC Bioinformatics (2015) 0.90
Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life. Genes Nutr (2013) 0.88
Web-enabled and improved software tools and data are needed to measure nutrient intakes and physical activity for personalized health research. J Nutr (2010) 0.84
Potential value of nutrigenomics in Crohn's disease. Nat Rev Gastroenterol Hepatol (2012) 0.84
Nutrigenetics, nutrigenomics, and selenium. Front Genet (2011) 0.81
The genomics of micronutrient requirements. Genes Nutr (2015) 0.81
Human nutrition, environment, and health. Genes Nutr (2015) 0.80
Answering biological questions: querying a systems biology database for nutrigenomics. Genes Nutr (2010) 0.79
Translational genomics. Appl Transl Genom (2014) 0.76
A software tool for the input and management of phenotypic data using personal digital assistants and other mobile devices. Plant Methods (2015) 0.75
Ayurnutrigenomics: Ayurveda-inspired personalized nutrition from inception to evidence. J Tradit Complement Med (2015) 0.75
Nutritional phenotype databases and integrated nutrition: from molecules to populations. Adv Nutr (2014) 0.75
Connecting the Human Variome Project to nutrigenomics. Genes Nutr (2010) 0.75
Strategies for individual phenotyping of linoleic and arachidonic acid metabolism using an oral glucose tolerance test. PLoS One (2015) 0.75
Propelling the paradigm shift from reductionism to systems nutrition. Genes Nutr (2017) 0.75
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46
GenePattern 2.0. Nat Genet (2006) 29.07
Genetics of gene expression and its effect on disease. Nature (2008) 21.35
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol (2003) 20.83
The NCBI dbGaP database of genotypes and phenotypes. Nat Genet (2007) 17.93
ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Res (2003) 15.48
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
PRIDE: the proteomics identifications database. Proteomics (2005) 7.52
Human metabolic phenotype diversity and its association with diet and blood pressure. Nature (2008) 5.41
Petabyte-scale innovations at the European Nucleotide Archive. Nucleic Acids Res (2008) 5.21
The Framingham Heart Study 100K SNP genome-wide association study resource: overview of 17 phenotype working group reports. BMC Med Genet (2007) 5.02
A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet (2005) 4.45
The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". OMICS (2008) 4.15
Antioxidant supplements for prevention of mortality in healthy participants and patients with various diseases. Cochrane Database Syst Rev (2008) 3.83
Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity. Mol Syst Biol (2008) 3.82
ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. Environ Health Perspect (2003) 3.39
Biobanking for Europe. Brief Bioinform (2007) 2.76
The metabolomics standards initiative. Nat Biotechnol (2007) 2.54
Cytoscape: a community-based framework for network modeling. Methods Mol Biol (2009) 2.39
Mining biological pathways using WikiPathways web services. PLoS One (2009) 2.17
Evidence of different metabolic phenotypes in humans. Proc Natl Acad Sci U S A (2008) 2.06
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinformatics (2010) 2.03
Susceptibility of human metabolic phenotypes to dietary modulation. J Proteome Res (2006) 1.96
What is health? The ability to adapt. Lancet (2009) 1.66
Human Variome Project: an international collaboration to catalogue human genetic variation. Pharmacogenomics (2006) 1.40
DNA methylomes, histone codes and miRNAs: tying it all together. Int J Biochem Cell Biol (2008) 1.40
Individual human phenotypes in metabolic space and time. J Proteome Res (2009) 1.29
The case for strategic international alliances to harness nutritional genomics for public and personal health. Br J Nutr (2005) 1.24
The complex links between dietary phytochemicals and human health deciphered by metabolomics. Mol Nutr Food Res (2009) 1.21
NuGO contributions to GenePattern. Genes Nutr (2008) 1.16
Urinary flavonoids and phenolic acids as biomarkers of intake for polyphenol-rich foods. Br J Nutr (2006) 1.06
Session 2: Personalised nutrition. Epigenomics: a basis for understanding individual differences? Proc Nutr Soc (2008) 1.00
The nutritional phenotype in the age of metabolomics. J Nutr (2005) 0.96
Defining best practice for microarray analyses in nutrigenomic studies. Br J Nutr (2005) 0.90
Bioinformatics for the NuGO proof of principle study: analysis of gene expression in muscle of ApoE3*Leiden mice on a high-fat diet using PathVisio. Genes Nutr (2008) 0.82
Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network. Genes Nutr (2009) 0.81
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol (2007) 35.41
EnsMart: a generic system for fast and flexible access to biological data. Genome Res (2004) 17.64
ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Res (2003) 15.48
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res (2008) 12.45
HMDB 3.0--The Human Metabolome Database in 2013. Nucleic Acids Res (2012) 9.21
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics (2006) 7.53
Polyphenols: food sources and bioavailability. Am J Clin Nutr (2004) 7.46
The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Long-term effect of aspirin on cancer risk in carriers of hereditary colorectal cancer: an analysis from the CAPP2 randomised controlled trial. Lancet (2011) 6.77
Bioavailability and bioefficacy of polyphenols in humans. I. Review of 97 bioavailability studies. Am J Clin Nutr (2005) 6.05
Modeling biomedical experimental processes with OBI. J Biomed Semantics (2010) 5.36
WikiPathways: building research communities on biological pathways. Nucleic Acids Res (2011) 4.78
Toward interoperable bioscience data. Nat Genet (2012) 4.72
Megascience. 'Omics data sharing. Science (2009) 4.36
The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". OMICS (2008) 4.15
Effect of aspirin or resistant starch on colorectal neoplasia in the Lynch syndrome. N Engl J Med (2008) 3.76
Folic acid supplements and risk of facial clefts: national population based case-control study. BMJ (2007) 3.67
Development of FuGO: an ontology for functional genomics investigations. OMICS (2006) 3.59
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
The fasting-induced adipose factor/angiopoietin-like protein 4 is physically associated with lipoproteins and governs plasma lipid levels and adiposity. J Biol Chem (2005) 3.51
MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res (2012) 3.32
TAK1 suppresses a NEMO-dependent but NF-kappaB-independent pathway to liver cancer. Cancer Cell (2010) 3.25
Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation. Anal Chem (2006) 3.24
Open PHACTS: semantic interoperability for drug discovery. Drug Discov Today (2012) 3.15
The inflammasome-mediated caspase-1 activation controls adipocyte differentiation and insulin sensitivity. Cell Metab (2010) 3.11
Angptl4 protects against severe proinflammatory effects of saturated fat by inhibiting fatty acid uptake into mesenteric lymph node macrophages. Cell Metab (2010) 2.95
Detection of prokaryotic mRNA signifies microbial viability and promotes immunity. Nature (2011) 2.93
'Spice' and other herbal blends: harmless incense or cannabinoid designer drugs? J Mass Spectrom (2009) 2.86
Maternal supplementation with very-long-chain n-3 fatty acids during pregnancy and lactation augments children's IQ at 4 years of age. Pediatrics (2003) 2.86
Establishing reporting standards for metabolomic and metabonomic studies: a call for participation. OMICS (2006) 2.72
Tracking of obesity-related behaviours from childhood to adulthood: A systematic review. Maturitas (2011) 2.59
The metabolomics standards initiative. Nat Biotechnol (2007) 2.54
Kupffer cells promote hepatic steatosis via interleukin-1beta-dependent suppression of peroxisome proliferator-activated receptor alpha activity. Hepatology (2010) 2.53
Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Rep (2003) 2.51
Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway. Proc Natl Acad Sci U S A (2007) 2.49
The G0/G1 switch gene 2 is a novel PPAR target gene. Biochem J (2005) 2.29
Multigenerational epigenetic adaptation of the hepatic wound-healing response. Nat Med (2012) 2.28
Assessing the survival of transgenic plant DNA in the human gastrointestinal tract. Nat Biotechnol (2004) 2.26
The direct peroxisome proliferator-activated receptor target fasting-induced adipose factor (FIAF/PGAR/ANGPTL4) is present in blood plasma as a truncated protein that is increased by fenofibrate treatment. J Biol Chem (2004) 2.23
Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research. Metabolomics (2009) 2.21
Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice. Cell Metab (2013) 2.17
Hepatic acute-phase proteins control innate immune responses during infection by promoting myeloid-derived suppressor cell function. J Exp Med (2010) 2.17
Peroxisome proliferator-activated receptor alpha target genes. PPAR Res (2010) 2.09
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinformatics (2010) 2.03
A saturated fatty acid-rich diet induces an obesity-linked proinflammatory gene expression profile in adipose tissue of subjects at risk of metabolic syndrome. Am J Clin Nutr (2009) 2.00
The biological relevance of direct antioxidant effects of polyphenols for cardiovascular health in humans is not established. J Nutr (2011) 1.99
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinformatics (2008) 1.98
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
Biomarkers of the intake of dietary polyphenols: strengths, limitations and application in nutrition research. Br J Nutr (2007) 1.95
Advanced glycation endproducts in food and their effects on health. Food Chem Toxicol (2013) 1.94
Polyphenols and prevention of cardiovascular diseases. Curr Opin Lipidol (2005) 1.93
GO-Elite: a flexible solution for pathway and ontology over-representation. Bioinformatics (2012) 1.91
Peroxisome proliferator-activated receptor alpha mediates the effects of high-fat diet on hepatic gene expression. Endocrinology (2005) 1.90
Survey-based naming conventions for use in OBO Foundry ontology development. BMC Bioinformatics (2009) 1.90
Comprehensive analysis of PPARalpha-dependent regulation of hepatic lipid metabolism by expression profiling. PPAR Res (2007) 1.88
Metabolic profiling of the response to an oral glucose tolerance test detects subtle metabolic changes. PLoS One (2009) 1.87
Adiponectin and its receptors are expressed in bone-forming cells. Bone (2004) 1.86
Metabolomics in human nutrition: opportunities and challenges. Am J Clin Nutr (2005) 1.85
Peroxisome proliferator-activated receptor gamma activation promotes infiltration of alternatively activated macrophages into adipose tissue. J Biol Chem (2008) 1.81
Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis. Genome Biol (2007) 1.80
PPARalpha governs glycerol metabolism. J Clin Invest (2004) 1.79
Personal PM2.5 exposure and markers of oxidative stress in blood. Environ Health Perspect (2003) 1.76
Prediagnostic circulating vitamin D levels and risk of hepatocellular carcinoma in European populations: a nested case-control study. Hepatology (2014) 1.75
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data. Nucleic Acids Res (2013) 1.74
Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila. Front Microbiol (2011) 1.69
Evidence against a beneficial effect of irisin in humans. PLoS One (2013) 1.68
Risks and safety of polyphenol consumption. Am J Clin Nutr (2005) 1.67
Flavonoids and heart health: proceedings of the ILSI North America Flavonoids Workshop, May 31-June 1, 2005, Washington, DC. J Nutr (2007) 1.66
A randomized placebo-controlled prevention trial of aspirin and/or resistant starch in young people with familial adenomatous polyposis. Cancer Prev Res (Phila) (2011) 1.64
Time-resolved and tissue-specific systems analysis of the pathogenesis of insulin resistance. PLoS One (2010) 1.64
The IL-6-gp130-STAT3 pathway in hepatocytes triggers liver protection in T cell-mediated liver injury. J Clin Invest (2005) 1.63
Annotation of environmental OMICS data: application to the transcriptomics domain. OMICS (2006) 1.62
Micronutrient intake and risk of urothelial carcinoma in a prospective Danish cohort. Eur Urol (2009) 1.60
Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human. PLoS One (2009) 1.59
Serum vitamin D concentration does not predict insulin action or secretion in European subjects with the metabolic syndrome. Diabetes Care (2010) 1.59
Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB J (2007) 1.58
The effects of acute and chronic exercise on PGC-1α, irisin and browning of subcutaneous adipose tissue in humans. FEBS J (2013) 1.58
Lack of the Kir4.1 channel subunit abolishes K+ buffering properties of astrocytes in the ventral respiratory group: impact on extracellular K+ regulation. J Neurophysiol (2005) 1.57
iPad-assisted percutaneous access to the kidney using marker-based navigation: initial clinical experience. Eur Urol (2011) 1.56
Angptl4 upregulates cholesterol synthesis in liver via inhibition of LPL- and HL-dependent hepatic cholesterol uptake. Arterioscler Thromb Vasc Biol (2007) 1.56
Dietary fat and plasma total homocysteine concentrations in 2 adult age groups: the Hordaland Homocysteine Study. Am J Clin Nutr (2007) 1.55
Peroxisome proliferator-activated receptor alpha protects against obesity-induced hepatic inflammation. Endocrinology (2007) 1.54
MetaboLights: towards a new COSMOS of metabolomics data management. Metabolomics (2012) 1.53
Identifying the missing steps of the autotrophic 3-hydroxypropionate CO2 fixation cycle in Chloroflexus aurantiacus. Proc Natl Acad Sci U S A (2009) 1.50
Fish-oil supplementation induces antiinflammatory gene expression profiles in human blood mononuclear cells. Am J Clin Nutr (2009) 1.49
Leptin stimulates human osteoblastic cell proliferation, de novo collagen synthesis, and mineralization: Impact on differentiation markers, apoptosis, and osteoclastic signaling. J Cell Biochem (2002) 1.49
Degradation of transgenic DNA from genetically modified soya and maize in human intestinal simulations. Br J Nutr (2002) 1.48
Proteomic analysis reveals field-wide changes in protein expression in the morphologically normal mucosa of patients with colorectal neoplasia. Cancer Res (2006) 1.48
Meeting Report: BioSharing at ISMB 2010. Stand Genomic Sci (2010) 1.47
Intake of flavonoid-rich wine, tea, and chocolate by elderly men and women is associated with better cognitive test performance. J Nutr (2008) 1.47
Genome-wide analysis of PPARalpha activation in murine small intestine. Physiol Genomics (2007) 1.45
Mutagenicity of cytochrome P450 2E1 substrates in the Ames test with the metabolic competent S. typhimurium strain YG7108pin3ERb5. Toxicology (2006) 1.45
Standardizing data. Nat Nanotechnol (2013) 1.44
Dietary intake of 337 polyphenols in French adults. Am J Clin Nutr (2011) 1.43