Published in BMC Genomics on May 06, 2008
The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth. Appl Environ Microbiol (2010) 1.44
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. BMC Genomics (2008) 1.43
Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1. ISME J (2013) 1.18
Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic. Appl Environ Microbiol (2011) 1.16
Some like it cold: understanding the survival strategies of psychrophiles. EMBO Rep (2014) 1.13
Widespread occurrence of secondary lipid biosynthesis potential in microbial lineages. PLoS One (2011) 1.10
Psychrophilic enzymes: from folding to function and biotechnology. Scientifica (Cairo) (2013) 1.04
Natural selection and immortality. Biogerontology (2008) 0.94
Quorum sensing in extreme environments. Life (Basel) (2013) 0.90
Genomic and phenotypic insights into the ecology of Arthrobacter from Antarctic soils. BMC Genomics (2015) 0.87
Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida. BMC Genomics (2016) 0.84
Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil. Microbiologyopen (2014) 0.82
Extensive gene acquisition in the extremely psychrophilic bacterial species Psychroflexus torquis and the link to sea-ice ecosystem specialism. Genome Biol Evol (2014) 0.82
Complete Genome Sequence of the Deep-Sea Bacterium Psychromonas Strain CNPT3. Genome Announc (2013) 0.79
Molecular characterization of cold adaptation of membrane proteins in the Vibrionaceae core-genome. PLoS One (2012) 0.77
Genome-based comparative analyses of Antarctic and temperate species of Paenibacillus. PLoS One (2014) 0.77
Characterisation of an L-haloacid dehalogenase from the marine psychrophile Psychromonas ingrahamii with potential industrial application. Mar Biotechnol (NY) (2013) 0.77
Enzymes from Extreme Environments and Their Industrial Applications. Front Bioeng Biotechnol (2015) 0.77
Response of Bacterial Communities to Different Detritus Compositions in Arctic Deep-Sea Sediments. Front Microbiol (2017) 0.75
Genome Sequence of Rhodoferax antarcticus ANT.BR(T); A Psychrophilic Purple Nonsulfur Bacterium from an Antarctic Microbial Mat. Microorganisms (2017) 0.75
Draft Genome Sequence of Permafrost Bacterium Nesterenkonia sp. Strain PF2B19, Revealing a Cold Adaptation Strategy and Diverse Biotechnological Potential. Genome Announc (2017) 0.75
Comparative genomic analysis reveals the environmental impacts on two Arcticibacter strains including sixteen Sphingobacteriaceae species. Sci Rep (2017) 0.75
Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts. Mar Drugs (2016) 0.75
NADP(+)-dependent isocitrate dehydrogenase from a psychrophilic bacterium, Psychromonas marina. Extremophiles (2017) 0.75
Quorum sensing is a language of chemical signals and plays an ecological role in algal-bacterial interactions. CRC Crit Rev Plant Sci (2016) 0.75
Characterizing the surface-exposed proteome of Planococcus halocryophilus during cryophilic growth. Extremophiles (2015) 0.75
Microbial Diversity in Extreme Marine Habitats and Their Biomolecules. Microorganisms (2017) 0.75
Structural characterization of metal binding to a cold-adapted frataxin. J Biol Inorg Chem (2015) 0.75
Identification and expression of the tig gene coding for trigger factor from psychrophilic bacteria with no information of genome sequence available. Curr Microbiol (2009) 0.75
Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res (1998) 106.16
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res (1998) 96.63
Consed: a graphical tool for sequence finishing. Genome Res (1998) 59.36
Amino acid substitution matrices from an information theoretic perspective. J Mol Biol (1991) 23.38
rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol (2000) 8.80
Quorum sensing controls biofilm formation in Vibrio cholerae. Mol Microbiol (2003) 5.46
Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res (2005) 3.18
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A (2005) 3.10
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res (2005) 2.89
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol (2006) 2.43
Cold-adapted enzymes. Annu Rev Biochem (2006) 2.21
Darwin v. 2.0: an interpreted computer language for the biosciences. Bioinformatics (2000) 2.17
Control of formation and cellular detachment from Shewanella oneidensis MR-1 biofilms by cyclic di-GMP. J Bacteriol (2006) 2.15
C4-dicarboxylate carriers and sensors in bacteria. Biochim Biophys Acta (2002) 1.99
The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea. FEMS Microbiol Rev (2001) 1.72
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci U S A (2004) 1.62
Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome. Proc Natl Acad Sci U S A (2006) 1.61
Bacterial toxicity of potassium tellurite: unveiling an ancient enigma. PLoS One (2007) 1.49
Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol (2004) 1.48
Cold-adapted enzymes from marine Antarctic microorganisms. Mar Biotechnol (NY) (2006) 1.17
Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria. J Appl Genet (2003) 1.17
Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments. J Bacteriol (2006) 1.16
Gene fusions and gene duplications: relevance to genomic annotation and functional analysis. BMC Genomics (2005) 1.15
Vibrio cholerae strains possess multiple strategies for abiotic and biotic surface colonization. J Bacteriol (2007) 1.12
Subfreezing activity of microorganisms and the potential habitability of Mars' polar regions. Astrobiology (2003) 1.11
Cold-loving microbes, plants, and animals--fundamental and applied aspects. Naturwissenschaften (2006) 1.10
Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes. Gene (2006) 1.10
Codon usage domains over bacterial chromosomes. PLoS Comput Biol (2006) 1.09
Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice. Int J Syst Evol Microbiol (2006) 1.03
Functional consequences of single:double ring transitions in chaperonins: life in the cold. Mol Microbiol (2004) 1.02
Psychromonas antarcticus gen. nov., sp. nov., A new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, antarctica Arch Microbiol (1998) 0.92
Subfreezing growth of the sea ice bacterium "Psychromonas ingrahamii". Microb Ecol (2004) 0.87
Persistent biases in the amino acid composition of prokaryotic proteins. Bioessays (2006) 0.84
Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics (2010) 42.80
Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol (2006) 14.24
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet (2009) 8.51
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nat Biotechnol (2003) 6.11
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol (2008) 5.38
Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature (2003) 5.04
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc Natl Acad Sci U S A (2009) 4.80
Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat Biotechnol (2003) 4.78
Nucleotide sequence database policies. Science (2002) 4.72
Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol Microbiol (2003) 3.86
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol (2009) 3.63
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A (2005) 3.37
Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. J Bacteriol (2006) 3.23
Base composition bias might result from competition for metabolic resources. Trends Genet (2002) 3.17
SubtiList: the reference database for the Bacillus subtilis genome. Nucleic Acids Res (2002) 2.99
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol (2009) 2.94
Universal biases in protein composition of model prokaryotes. Proteins (2005) 2.90
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res (2005) 2.89
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol (2003) 2.63
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology (2009) 2.62
Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae. J Bacteriol (2010) 2.50
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol (2006) 2.43
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ Microbiol (2008) 2.40
Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. PLoS One (2007) 2.28
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation. PLoS One (2012) 2.25
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol (2009) 2.24
Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat Genet (2003) 2.24
Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. J Bacteriol (2004) 2.23
Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol (2007) 2.15
Enigmatic, ultrasmall, uncultivated Archaea. Proc Natl Acad Sci U S A (2010) 2.12
Whole-genome analyses of speciation events in pathogenic Brucellae. Infect Immun (2005) 2.11
Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. Proc Natl Acad Sci U S A (2011) 1.96
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proc Natl Acad Sci U S A (2005) 1.93
Gene and translation initiation site prediction in metagenomic sequences. Bioinformatics (2012) 1.92
Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T. J Bacteriol (2010) 1.86
Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol (2007) 1.82
A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. J Bacteriol (2007) 1.82
Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics (2008) 1.82
The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J Bacteriol (2006) 1.79
Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata. J Bacteriol (2011) 1.79
Gene essentiality determines chromosome organisation in bacteria. Nucleic Acids Res (2003) 1.74
Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter. Proc Natl Acad Sci U S A (2002) 1.73
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli. Microbiology (2004) 1.71
Bacterial variations on the methionine salvage pathway. BMC Microbiol (2004) 1.68
Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity. Chem Biol Interact (2007) 1.65
How essential are nonessential genes? Mol Biol Evol (2005) 1.63
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. J Bacteriol (2012) 1.60
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet (2007) 1.59
The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Mol Biol Evol (2004) 1.56
Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis. Genome Announc (2013) 1.51
The methionine salvage pathway in Bacillus subtilis. BMC Microbiol (2002) 1.48
S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum. Nucleic Acids Res (2008) 1.47
Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol (2009) 1.46
Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine. J Bacteriol (2002) 1.45
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. ISME J (2011) 1.43
Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida. Genome Announc (2013) 1.42
Three different systems participate in L-cystine uptake in Bacillus subtilis. J Bacteriol (2004) 1.40
The complete genome sequence of Bacillus thuringiensis Al Hakam. J Bacteriol (2007) 1.40
Construction and validation of the Rhodobacter sphaeroides 2.4.1 DNA microarray: transcriptome flexibility at diverse growth modes. J Bacteriol (2004) 1.40
The sequence and analysis of duplication-rich human chromosome 16. Nature (2004) 1.38
The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes. PLoS Pathog (2010) 1.37
Persistence drives gene clustering in bacterial genomes. BMC Genomics (2008) 1.37
Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment. Appl Environ Microbiol (2008) 1.35
Synthetic biology: discovering new worlds and new words. EMBO Rep (2008) 1.35
Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Appl Environ Microbiol (2009) 1.34
Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes. BMC Bioinformatics (2002) 1.33
Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725. J Bacteriol (2009) 1.33
Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass. J Bacteriol (2012) 1.32
Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. PLoS One (2007) 1.31
Improved genome annotation for Zymomonas mobilis. Nat Biotechnol (2009) 1.30
Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Res (2009) 1.29
YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity. Nucleic Acids Res (2007) 1.29
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. J Bacteriol (2008) 1.27
Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections. BMC Microbiol (2006) 1.27
Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (2010) 1.26
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol (2010) 1.25
The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination. Microbiology (2002) 1.25
Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens. Appl Environ Microbiol (2002) 1.25
Global control of cysteine metabolism by CymR in Bacillus subtilis. J Bacteriol (2006) 1.24
Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS One (2007) 1.24
Complete genome sequences of six strains of the genus Methylobacterium. J Bacteriol (2012) 1.23
Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255. Appl Environ Microbiol (2006) 1.21
Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis. Eur J Hum Genet (2005) 1.21
The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects. J Bacteriol (2004) 1.21
Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments. Proc Natl Acad Sci U S A (2008) 1.19
In vitro assembly and GTP hydrolysis by bacterial tubulins BtubA and BtubB. J Cell Biol (2005) 1.18