Published in Stud Health Technol Inform on January 01, 2008
The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinformatics (2011) 1.13
Improving the extraction of complex regulatory events from scientific text by using ontology-based inference. J Biomed Semantics (2011) 1.04
Modeling structure-function relationships in synthetic DNA sequences using attribute grammars. PLoS Comput Biol (2009) 1.03
Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task. BMC Bioinformatics (2015) 0.93
Ontology design patterns to disambiguate relations between genes and gene products in GENIA. J Biomed Semantics (2011) 0.89
Extracting rate changes in transcriptional regulation from MEDLINE abstracts. BMC Bioinformatics (2014) 0.80
Evaluation and cross-comparison of lexical entities of biological interest (LexEBI). PLoS One (2013) 0.79
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. BioData Min (2016) 0.77
Identifying and classifying biomedical perturbations in text. Nucleic Acids Res (2008) 0.75
Differential gene expression in disease: a comparison between high-throughput studies and the literature. BMC Med Genomics (2017) 0.75
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res (2004) 18.75
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinformatics (2005) 6.58
Mammographic breast density as an intermediate phenotype for breast cancer. Lancet Oncol (2005) 3.99
The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol (2003) 3.86
The conserved Bardet-Biedl syndrome proteins assemble a coat that traffics membrane proteins to cilia. Cell (2010) 3.83
MEDSYNDIKATE--a natural language system for the extraction of medical information from findings reports. Int J Med Inform (2002) 2.70
CXCR4 regulates interneuron migration in the developing neocortex. J Neurosci (2003) 2.44
Regulation of μ-opioid receptors: desensitization, phosphorylation, internalization, and tolerance. Pharmacol Rev (2013) 2.42
MeSH Up: effective MeSH text classification for improved document retrieval. Bioinformatics (2009) 2.38
Receptor endocytosis counteracts the development of opioid tolerance. Mol Pharmacol (2004) 2.36
High-performance gene name normalization with GeNo. Bioinformatics (2009) 2.26
Internalization of sst2, sst3, and sst5 receptors: effects of somatostatin agonists and antagonists. J Nucl Med (2006) 2.23
Effect of the A118G polymorphism on binding affinity, potency and agonist-mediated endocytosis, desensitization, and resensitization of the human mu-opioid receptor. J Neurochem (2004) 2.07
Spatial location and its relevance for terminological inferences in bio-ontologies. BMC Bioinformatics (2007) 1.93
UKPMC: a full text article resource for the life sciences. Nucleic Acids Res (2010) 1.92
Text mining for biology--the way forward: opinions from leading scientists. Genome Biol (2008) 1.91
Assessment of disease named entity recognition on a corpus of annotated sentences. BMC Bioinformatics (2008) 1.89
The roles of versican V1 and V2 isoforms in cell proliferation and apoptosis. Mol Biol Cell (2005) 1.85
Cxcr7 controls neuronal migration by regulating chemokine responsiveness. Neuron (2011) 1.76
Text mining: powering the database revolution. Nature (2007) 1.74
CALBC silver standard corpus. J Bioinform Comput Biol (2010) 1.74
Use of description logic classification to reason about consequences of penetrating injuries. AMIA Annu Symp Proc (2005) 1.72
Protein annotation by EBIMed. Nat Biotechnol (2006) 1.69
Part-whole representation and reasoning in formal biomedical ontologies. Artif Intell Med (2005) 1.66
GOAnnotator: linking protein GO annotations to evidence text. J Biomed Discov Collab (2006) 1.66
Trifunctional somatostatin-based derivatives designed for targeted radiotherapy using auger electron emitters. J Nucl Med (2005) 1.64
Minimally invasive plate osteosynthesis of subtrochanteric femur fractures with a locking plate: a prospective series of 20 fractures. Arch Orthop Trauma Surg (2009) 1.59
Interoperability between phenotype and anatomy ontologies. Bioinformatics (2010) 1.58
A power law global error model for the identification of differentially expressed genes in microarray data. BMC Bioinformatics (2004) 1.56
Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade. Appl Environ Microbiol (2005) 1.56
Discovery of complex mixtures of novel long-chain quorum sensing signals in free-living and host-associated marine alphaproteobacteria. Chembiochem (2005) 1.56
Heterodimerization of somatostatin and opioid receptors cross-modulates phosphorylation, internalization, and desensitization. J Biol Chem (2002) 1.54
Using argumentation to extract key sentences from biomedical abstracts. Int J Med Inform (2006) 1.50
Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinformatics (2010) 1.50
Computer-assisted generation of a protein-interaction database for nuclear receptors. Mol Endocrinol (2003) 1.47
Composition of human skin microbiota affects attractiveness to malaria mosquitoes. PLoS One (2011) 1.47
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics (2013) 1.44
MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline. Bioinformatics (2008) 1.43
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J Biomed Semantics (2011) 1.43
Potent anti-inflammatory and antinociceptive activity of the endothelin receptor antagonist bosentan in monoarthritic mice. Arthritis Res Ther (2011) 1.42
Agonist-selective patterns of µ-opioid receptor phosphorylation revealed by phosphosite-specific antibodies. Br J Pharmacol (2011) 1.40
Heterodimerization of substance P and mu-opioid receptors regulates receptor trafficking and resensitization. J Biol Chem (2003) 1.40
CXCR4 and Gab1 cooperate to control the development of migrating muscle progenitor cells. Genes Dev (2005) 1.40
Volatiles released by a Streptomyces species isolated from the North Sea. Chem Biodivers (2005) 1.38
Autoinducer-2-regulated genes in Streptococcus mutans UA159 and global metabolic effect of the luxS mutation. J Bacteriol (2007) 1.37
Integrating protein-protein interactions and text mining for protein function prediction. BMC Bioinformatics (2008) 1.36
Biosynthesis of volatiles by the myxobacterium Myxococcus xanthus. Chembiochem (2004) 1.35
Regional and cellular localization of the CXCl12/SDF-1 chemokine receptor CXCR7 in the developing and adult rat brain. J Comp Neurol (2008) 1.35
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinformatics (2011) 1.35
Differential attraction of malaria mosquitoes to volatile blends produced by human skin bacteria. PLoS One (2010) 1.34
Differential beta-arrestin trafficking and endosomal sorting of somatostatin receptor subtypes. J Biol Chem (2004) 1.32
Creating knowledge repositories from biomedical reports: the MEDSYNDIKATE text mining system. Pac Symp Biocomput (2002) 1.31
Differential effects of octreotide and pasireotide on somatostatin receptor internalization and trafficking in vitro. J Clin Endocrinol Metab (2008) 1.31
Identification and biosynthesis of tropone derivatives and sulfur volatiles produced by bacteria of the marine Roseobacter clade. Org Biomol Chem (2009) 1.30
On-demand three-dimensional freeform fabrication of multi-layered hydrogel scaffold with fluidic channels. Biotechnol Bioeng (2010) 1.30
Enhanced expression of the CXCl12/SDF-1 chemokine receptor CXCR7 after cerebral ischemia in the rat brain. J Neuroimmunol (2008) 1.27
Patterns of SDF-1alpha and SDF-1gamma mRNAs, migration pathways, and phenotypes of CXCR4-expressing neurons in the developing rat telencephalon. J Comp Neurol (2007) 1.27
Towards an upper level ontology for molecular biology. AMIA Annu Symp Proc (2006) 1.25
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PLoS One (2011) 1.24
Somatostatin signaling in neuronal cilia is critical for object recognition memory. J Neurosci (2010) 1.23
Reassessment of sst2 somatostatin receptor expression in human normal and neoplastic tissues using the novel rabbit monoclonal antibody UMB-1. J Clin Endocrinol Metab (2008) 1.23
Automatic recognition of conceptualization zones in scientific articles and two life science applications. Bioinformatics (2012) 1.21
Results of an Internet survey of myoelectric prosthetic hand users. Prosthet Orthot Int (2007) 1.20
Facilitating the development of controlled vocabularies for metabolomics technologies with text mining. BMC Bioinformatics (2008) 1.20
Membrane glycoprotein M6a interacts with the micro-opioid receptor and facilitates receptor endocytosis and recycling. J Biol Chem (2007) 1.18
Versican V1 isoform induces neuronal differentiation and promotes neurite outgrowth. Mol Biol Cell (2004) 1.17
Somatostatin receptor subtypes in human pheochromocytoma: subcellular expression pattern and functional relevance for octreotide scintigraphy. J Clin Endocrinol Metab (2003) 1.17
Biosynthesis of the off-flavor 2-methylisoborneol by the myxobacterium Nannocystis exedens. Angew Chem Int Ed Engl (2007) 1.16
Nonoperative management of solitary eosinophilic granulomas of the calvaria. J Neurosurg Pediatr (2013) 1.16
Immunohistochemical identification of the PTHR1 parathyroid hormone receptor in normal and neoplastic human tissues. Eur J Endocrinol (2010) 1.16
Isosemantic rendering of clinical information using formal ontologies and RDF. Stud Health Technol Inform (2013) 1.15
Comparing of IRS and Her2 as immunohistochemical scoring schemes in gastroenteropancreatic neuroendocrine tumors. Int J Clin Exp Pathol (2012) 1.15
A cost comparison of management of chronic hepatitis B and its associated complications in Hong Kong and Singapore. J Clin Gastroenterol (2004) 1.15
Indium-111-pentetreotide scintigraphy and somatostatin receptor subtype 2 expression: new prognostic factors for malignant well-differentiated endocrine tumors. J Clin Oncol (2008) 1.15
Logic-based remodeling of the Digital Anatomist Foundational Model. AMIA Annu Symp Proc (2003) 1.14
PET of CXCR4 expression by a (68)Ga-labeled highly specific targeted contrast agent. J Nucl Med (2011) 1.13
The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinformatics (2011) 1.13
Deciphering µ-opioid receptor phosphorylation and dephosphorylation in HEK293 cells. Br J Pharmacol (2012) 1.13
Seed odor mediates an obligate ant-plant mutualism in Amazonian rainforests. Proc Natl Acad Sci U S A (2008) 1.13
Neuronal types expressing mu- and delta-opioid receptor mRNA in the rat hippocampal formation. J Comp Neurol (2004) 1.13
Biological network extraction from scientific literature: state of the art and challenges. Brief Bioinform (2013) 1.12
Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb. BMC Bioinformatics (2009) 1.12
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics (2014) 1.12
Tropodithietic acid production in Phaeobacter gallaeciensis is regulated by N-acyl homoserine lactone-mediated quorum sensing. J Bacteriol (2011) 1.11
Cross-language MeSH indexing using morpho-semantic normalization. AMIA Annu Symp Proc (2003) 1.11
The @neurIST ontology of intracranial aneurysms: providing terminological services for an integrated IT infrastructure. AMIA Annu Symp Proc (2007) 1.11
New structural variants of homoserine lactones in bacteria. Chembiochem (2009) 1.11
Tonic activation of CXC chemokine receptor 4 in immature granule cells supports neurogenesis in the adult dentate gyrus. J Neurosci (2008) 1.11
Pasireotide and octreotide stimulate distinct patterns of sst2A somatostatin receptor phosphorylation. Mol Endocrinol (2010) 1.10
A novel type of geosmin biosynthesis in myxobacteria. J Org Chem (2005) 1.10
Molecular imaging with ⁶⁸Ga-SSTR PET/CT and correlation to immunohistochemistry of somatostatin receptors in neuroendocrine tumours. Eur J Nucl Med Mol Imaging (2011) 1.10
The German specialist lexicon. Proc AMIA Symp (2002) 1.10