Published in Comp Funct Genomics on January 01, 2005
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell (2012) 2.32
Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs. EMBO J (2011) 1.98
A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae). BMC Plant Biol (2008) 1.75
Domestication and breeding of tomatoes: what have we gained and what can we gain in the future? Ann Bot (2007) 1.68
Diversity in conserved genes in tomato. BMC Genomics (2007) 1.52
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics (2010) 1.41
Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries. Plant Cell Physiol (2011) 1.19
Tomato Expression Database (TED): a suite of data presentation and analysis tools. Nucleic Acids Res (2006) 1.17
TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections. Plant Cell Physiol (2011) 1.16
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae. Plant Physiol (2008) 1.16
Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii. Plant Physiol (2010) 1.10
The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. BMC Genomics (2012) 1.09
TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species. Nucleic Acids Res (2006) 1.07
Genome-wide SNP genotyping to infer the effects on gene functions in tomato. DNA Res (2013) 1.01
Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition. BMC Genomics (2008) 0.99
Evolution of ribosomal DNA-derived satellite repeat in tomato genome. BMC Plant Biol (2009) 0.98
A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. J Exp Bot (2008) 0.97
Comparative genetics of hybrid incompatibility: sterility in two Solanum species crosses. Genetics (2008) 0.96
Endogenous pararetroviral sequences in tomato (Solanum lycopersicum) and related species. BMC Plant Biol (2007) 0.96
A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response. Planta (2010) 0.94
Comprehensive resources for tomato functional genomics based on the miniature model tomato micro-tom. Curr Genomics (2008) 0.92
Structural and functional genomics of tomato. Int J Plant Genomics (2008) 0.92
Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato. BMC Plant Biol (2008) 0.91
ISOL@: an Italian SOLAnaceae genomics resource. BMC Bioinformatics (2008) 0.90
Enhancing the health-promoting effects of tomato fruit for biofortified food. Mediators Inflamm (2014) 0.89
A novel approach to locate Phytophthora infestans resistance genes on the potato genetic map. Theor Appl Genet (2009) 0.86
SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes. BMC Plant Biol (2009) 0.83
Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome. BMC Bioinformatics (2007) 0.83
Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms. Int J Plant Genomics (2012) 0.83
Functional genomics of tomato in a post-genome-sequencing phase. Breed Sci (2013) 0.82
TOPAAS, a tomato and potato assembly assistance system for selection and finishing of bacterial artificial chromosomes. Plant Physiol (2006) 0.79
Availability of Micro-Tom mutant library combined with TILLING in molecular breeding of tomato fruit shelf-life. Breed Sci (2012) 0.78
LeMYC2 acts as a negative regulator of blue light mediated photomorphogenic growth, and promotes the growth of adult tomato plants. BMC Plant Biol (2014) 0.78
A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition. BMC Genomics (2016) 0.77
BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping. PLoS One (2010) 0.77
Role of Cyclic Nucleotide Gated Channels in Stress Management in Plants. Curr Genomics (2016) 0.76
Identification of key genes involved in root development of tomato using expressed sequence tag analysis. Physiol Mol Biol Plants (2015) 0.75
Plastid Proteomic Analysis in Tomato Fruit Development. PLoS One (2015) 0.75
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33
High density molecular linkage maps of the tomato and potato genomes. Genetics (1992) 11.83
Genetic regulation of fruit development and ripening. Plant Cell (2004) 4.20
Cell wall metabolism in fruit softening and quality and its manipulation in transgenic plants. Plant Mol Biol (2001) 3.47
Enrichment of gene-coding sequences in maize by genome filtration. Science (2003) 3.41
Maize genome sequencing by methylation filtration. Science (2003) 3.31
Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J Exp Bot (2002) 3.20
Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell (2002) 2.93
Evolution of genome size in Brassicaceae. Ann Bot (2005) 2.91
Solanaceae--a model for linking genomics with biodiversity. Comp Funct Genomics (2004) 2.68
Molecular basis of Pto-mediated resistance to bacterial speck disease in tomato. Annu Rev Phytopathol (2003) 2.64
The genetic, developmental, and molecular bases of fruit size and shape variation in tomato. Plant Cell (2004) 2.59
Molecular biology of fruit ripening and its manipulation with antisense genes. Plant Mol Biol (1992) 2.32
A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae. Genetics (2002) 2.24
In silico screening of a saturated mutation library of tomato. Plant J (2004) 2.21
Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol (2001) 2.02
Signal transduction systems regulating fruit ripening. Trends Plant Sci (2004) 2.02
A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing. Genome Res (2000) 1.95
Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Res (2002) 1.94
Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. J Exp Bot (2002) 1.91
Molecular and biochemical triggers of potato tuber development. Plant Physiol (2001) 1.75
High-Cot sequence analysis of the maize genome. Plant J (2003) 1.65
An anchored framework BAC map of mouse chromosome 11 assembled using multiplex oligonucleotide hybridization. Genomics (1998) 1.46
Genetic analysis of wound signaling in tomato. Evidence for a dual role of jasmonic acid in defense and female fertility. Plant Physiol (2001) 1.33
AvrPto-dependent Pto-interacting proteins and AvrPto-interacting proteins in tomato. Proc Natl Acad Sci U S A (2000) 1.31
Gene expression during tuber development in potato plants. FEBS Lett (1990) 1.25
Localization of single- and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH). Genetics (1999) 1.23
Types and frequencies of sequencing errors in methyl-filtered and high c0t maize genome survey sequences. Plant Physiol (2004) 1.18
Molecular genetics of tomato fruit ripening. Trends Genet (1993) 1.05
Sense and antisense inactivation of fruit ripening genes in tomato. Curr Top Microbiol Immunol (1995) 0.95
Medicago truncatula. Curr Biol (2004) 0.90
Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40
The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom (2010) 6.16
Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature (2003) 5.48
The genome sequence and structure of rice chromosome 1. Nature (2002) 4.99
Genome structure of the legume, Lotus japonicus. DNA Res (2008) 4.93
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res (2002) 4.65
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47
A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals. Nature (2003) 4.47
Sequence and analysis of rice chromosome 4. Nature (2002) 4.39
A plant receptor-like kinase required for both bacterial and fungal symbiosis. Nature (2002) 4.29
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci U S A (2007) 4.13
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res (2006) 3.74
Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet (2007) 3.66
Sequencing of a rice centromere uncovers active genes. Nat Genet (2004) 3.66
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond. Plant Physiol (2005) 3.65
In planta functions of the Arabidopsis cytokinin receptor family. Proc Natl Acad Sci U S A (2004) 3.47
Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol (2002) 3.47
Histidine kinase homologs that act as cytokinin receptors possess overlapping functions in the regulation of shoot and root growth in Arabidopsis. Plant Cell (2004) 3.24
Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Plant Cell (2004) 3.17
Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol (2007) 3.13
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
An integrated physical and genetic map of the rice genome. Plant Cell (2002) 3.07
Shoot control of root development and nodulation is mediated by a receptor-like kinase. Nature (2002) 3.04
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem (2005) 2.98
Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell (2002) 2.93
Heterosis: revisiting the magic. Trends Genet (2006) 2.91
Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell (2005) 2.87
Engineering increased vitamin C levels in plants by overexpression of a D-galacturonic acid reductase. Nat Biotechnol (2003) 2.85
12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol (2005) 2.72
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci U S A (2006) 2.61
Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiol (2005) 2.60
A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis. Science (2006) 2.59
Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol (2004) 2.57
Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. DNA Res (2002) 2.56
A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis. Science (2006) 2.55
Unused natural variation can lift yield barriers in plant breeding. PLoS Biol (2004) 2.49
A new class of regulatory genes underlying the cause of pear-shaped tomato fruit. Proc Natl Acad Sci U S A (2002) 2.46
Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations. Proc Natl Acad Sci U S A (2002) 2.43
Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics (2009) 2.42
ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development. Plant J (2004) 2.42
Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet (2005) 2.39
Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science (2004) 2.37
The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell (2005) 2.36
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Proc Natl Acad Sci U S A (2006) 2.36
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol (2011) 2.36
Accuracy of visual screening for cervical neoplasia: Results from an IARC multicentre study in India and Africa. Int J Cancer (2004) 2.33
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat Genet (2010) 2.32
Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato. Nat Genet (2007) 2.31
Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res (2008) 2.31
Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of beta-carotene and xanthophylls in plants. Plant Cell (2002) 2.25
Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res (2008) 2.25
A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae. Genetics (2002) 2.24
Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development. Nature (2006) 2.24
The tomato Aux/IAA transcription factor IAA9 is involved in fruit development and leaf morphogenesis. Plant Cell (2005) 2.23
High-density integrated linkage map based on SSR markers in soybean. DNA Res (2009) 2.23
A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics (2011) 2.22
In silico screening of a saturated mutation library of tomato. Plant J (2004) 2.21
Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genomics (2009) 2.21
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res (2010) 2.19
Overdominant quantitative trait loci for yield and fitness in tomato. Proc Natl Acad Sci U S A (2006) 2.19
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell (2003) 2.19
An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J (2003) 2.16
Distinct roles for jasmonate synthesis and action in the systemic wound response of tomato. Proc Natl Acad Sci U S A (2002) 2.15
Comparative sequencing in the genus Lycopersicon. Implications for the evolution of fruit size in the domestication of cultivated tomatoes. Genetics (2002) 2.14
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. Proc Natl Acad Sci U S A (2012) 2.11
Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J (2004) 2.11
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS One (2012) 2.09
Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization. Biochem Biophys Res Commun (2003) 2.09
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proc Natl Acad Sci U S A (2010) 2.07
Fleshy fruit expansion and ripening are regulated by the Tomato SHATTERPROOF gene TAGL1. Plant Cell (2009) 2.05
Comparison and integration of four barley genetic maps. Genome (1996) 2.03
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics (2009) 2.02
Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. Genome Res (2005) 2.01
Conservation of gene function in the solanaceae as revealed by comparative mapping of domestication traits in eggplant. Genetics (2002) 1.99
Metabolite annotations based on the integration of mass spectral information. Plant J (2008) 1.97
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis. Plant J (2005) 1.97
Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium. PLoS One (2011) 1.96
Genome sequencing of 161 Mycobacterium tuberculosis isolates from China identifies genes and intergenic regions associated with drug resistance. Nat Genet (2013) 1.95
Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots. Nature (2004) 1.94
A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. DNA Res (2007) 1.93
Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Plant Cell Physiol (2008) 1.92
Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J (2008) 1.91
Cell-to-cell movement of the CAPRICE protein in Arabidopsis root epidermal cell differentiation. Development (2005) 1.91
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 1.90
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet (2008) 1.88
A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J (2013) 1.87
Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots. Proc Natl Acad Sci U S A (2007) 1.86
Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol (2002) 1.86
A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. Proc Natl Acad Sci U S A (2006) 1.85
An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol Biol (2002) 1.83
Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis. Plant Cell (2008) 1.81
Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis. Plant Cell (2005) 1.81