Published in J Am Soc Mass Spectrom on August 12, 2008
Peroxynitrite-mediated oxidative modifications of complex II: relevance in myocardial infarction. Biochemistry (2010) 0.93
VDAC3 as a sensor of oxidative state of the intermembrane space of mitochondria: the putative role of cysteine residue modifications. Oncotarget (2016) 0.86
Mitochondrial Redox Dysfunction and Environmental Exposures. Antioxid Redox Signal (2015) 0.82
Translation Control of Swarming Proficiency in Bacillus subtilis by 5-Amino-pentanolylated Elongation Factor P. J Biol Chem (2016) 0.79
Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol (1993) 64.61
Generation of superoxide anion by the NADH dehydrogenase of bovine heart mitochondria. Biochem J (1980) 4.62
Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus. Science (2006) 4.47
Persistent inhibition of cell respiration by nitric oxide: crucial role of S-nitrosylation of mitochondrial complex I and protective action of glutathione. Proc Natl Acad Sci U S A (1998) 3.10
The NADH:ubiquinone oxidoreductase (complex I) of respiratory chains. Q Rev Biophys (1992) 3.06
Bovine complex I is a complex of 45 different subunits. J Biol Chem (2006) 3.01
Simulation of multiple isotropic spin-trap EPR spectra. J Magn Reson B (1994) 2.69
A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data. BMC Bioinformatics (2007) 2.48
Nuclear and mitochondrial compartmentation of oxidative stress and redox signaling. Annu Rev Pharmacol Toxicol (2006) 2.48
The nuclear encoded subunits of complex I from bovine heart mitochondria. Biochim Biophys Acta (2003) 2.37
Reversible glutathionylation of complex I increases mitochondrial superoxide formation. J Biol Chem (2003) 2.28
Characterization of superoxide-producing sites in isolated brain mitochondria. J Biol Chem (2003) 2.20
Analysis of the subunit composition of complex I from bovine heart mitochondria. Mol Cell Proteomics (2003) 2.06
Glutaredoxin 2 catalyzes the reversible oxidation and glutathionylation of mitochondrial membrane thiol proteins: implications for mitochondrial redox regulation and antioxidant DEFENSE. J Biol Chem (2004) 1.99
Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB. Nat Struct Mol Biol (2008) 1.81
Glutathionylation of mitochondrial proteins. Antioxid Redox Signal (2005) 1.79
Electron-capture dissociation tandem mass spectrometry. Curr Opin Biotechnol (2004) 1.73
Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine. J Proteome Res (2007) 1.66
Purification and molecular and enzymic properties of mitochondrial NADH dehydrogenase. Arch Biochem Biophys (1979) 1.59
Preparation and properties of NADH: ubiquinone oxidoreductase (complexI), EC 1.6.5.3. Methods Enzymol (1978) 1.52
The phosphorylation of subunits of complex I from bovine heart mitochondria. J Biol Chem (2004) 1.43
Superoxide generation from mitochondrial NADH dehydrogenase induces self-inactivation with specific protein radical formation. J Biol Chem (2005) 1.38
Oxidative stress and S-nitrosylation of proteins in cells. Br J Pharmacol (2000) 1.33
Disulphide formation on mitochondrial protein thiols. Biochem Soc Trans (2005) 1.31
Mass spectrometry unravels disulfide bond formation as the mechanism that activates a molecular chaperone. J Biol Chem (2000) 1.30
Monte carlo simulation-based algorithms for analysis of shotgun proteomic data. J Proteome Res (2008) 1.26
Superoxide radical formation by pure complex I (NADH:ubiquinone oxidoreductase) from Yarrowia lipolytica. J Biol Chem (2005) 1.20
Site-specific S-glutathiolation of mitochondrial NADH ubiquinone reductase. Biochemistry (2007) 1.19
Definition of the mitochondrial proteome by measurement of molecular masses of membrane proteins. Proc Natl Acad Sci U S A (2006) 1.09
Determination of disulfide bonds in highly bridged disulfide-linked peptides by matrix-assisted laser desorption/ionization mass spectrometry with postsource decay. Anal Chem (1998) 1.05
Interactions of mitochondrial thiols with nitric oxide. Antioxid Redox Signal (2003) 1.05
Characterization of cysteine residues and disulfide bonds in proteins by liquid chromatography/electrospray ionization tandem mass spectrometry. J Mass Spectrom (2000) 1.02
The determination of the oxidation-reduction states of ubiquinone (coenzyme Q) in rat-liver mitochondria. Biochim Biophys Acta (1966) 0.98
Crystallization and initial crystallographic analysis of the disulfide bond isomerase DsbC in complex with the alpha domain of the electron transporter DsbD. J Struct Biol (2001) 0.98
Determination of the disulfide bond arrangement of dengue virus NS1 protein. J Biol Chem (2004) 0.97
Determination of disulfide bond assignment of human vitamin K-dependent gamma-glutamyl carboxylase by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Biol Chem (2003) 0.97
Characterizing closely spaced, complex disulfide bond patterns in peptides and proteins by liquid chromatography/electrospray ionization tandem mass spectrometry. J Mass Spectrom (2002) 0.92
Proteomic analysis of the subunit composition of complex I (NADH:ubiquinone oxidoreductase) from bovine heart mitochondria. Methods Mol Biol (2007) 0.91
Disulfide bond structure and N-glycosylation sites of the extracellular domain of the human interleukin-6 receptor. J Biol Chem (1999) 0.90
The Keilin-Hartree heart muscle preparation. Methods Enzymol (1979) 0.89
Mass spectrometric based mapping of the disulfide bonding patterns of integrin alpha chains. Biochemistry (2003) 0.88
Determination of the disulfide bond arrangement of Newcastle disease virus hemagglutinin neuraminidase. Correlation with a beta-sheet propeller structural fold predicted for paramyxoviridae attachment proteins. J Biol Chem (2000) 0.87
Characterisation of disulfide-bond dynamics in non-native states of lysozyme and its disulfide deletion mutants by NMR. Chembiochem (2005) 0.86
Peptide binding and NMR analysis of the interaction between SAP97 PDZ2 and GluR-A: potential involvement of a disulfide bond. Biochemistry (2006) 0.85
Positions of disulfide bonds and N-glycosylation site in juvenile hormone binding protein. Arch Biochem Biophys (2004) 0.84
Determination of a high-precision NMR structure of the minicollagen cysteine rich domain from Hydra and characterization of its disulfide bond formation. FEBS Lett (2004) 0.83
Determination of the disulfide bond pattern of the endogenous and recombinant angiogenesis inhibitor endostatin by mass spectrometry. Rapid Commun Mass Spectrom (2001) 0.81
Determination of the disulfide bond pattern of a novel C-type lectin from snake venom by mass spectrometry. Rapid Commun Mass Spectrom (2001) 0.80
Development of disulfide peptide mapping and determination of disulfide structure of recombinant human osteoprotegerin chimera produced in Escherichia coli. Arch Biochem Biophys (2000) 0.80
Determination of the carbohydrate composition and the disulfide bond linkages of bovine lactoperoxidase by mass spectrometry. J Mass Spectrom (2000) 0.80
Determination of tumor necrosis factor binding protein disulfide structure: deviation of the fourth domain structure from the TNFR/NGFR family cysteine-rich region signature. Biochemistry (1997) 0.79
Peptide mapping and disulfide bond analysis of the cytoplasmic region of an intrinsic membrane protein by mass spectrometry. Anal Biochem (2001) 0.78
Collision-activated cleavage of a peptide/antibiotic disulfide linkage: possible evidence for intramolecular disulfide bond rearrangement upon collisional activation. Rapid Commun Mass Spectrom (2004) 0.76
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nat Biotechnol (2013) 4.85
Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes. Mol Cell (2007) 3.38
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. J Am Med Inform Assoc (2007) 3.09
Portability of an algorithm to identify rheumatoid arthritis in electronic health records. J Am Med Inform Assoc (2012) 2.94
A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries. J Am Med Inform Assoc (2011) 2.70
Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo. Nature (2004) 2.69
Identification of novel histone post-translational modifications by peptide mass fingerprinting. Chromosoma (2003) 2.67
Data from clinical notes: a perspective on the tension between structure and flexible documentation. J Am Med Inform Assoc (2011) 2.57
Prospective derivation and validation of a clinical prediction rule for recurrent Clostridium difficile infection. Gastroenterology (2008) 2.50
A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data. BMC Bioinformatics (2007) 2.48
S-glutathionylation uncouples eNOS and regulates its cellular and vascular function. Nature (2010) 2.35
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut (2013) 2.32
MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data. Proteomics (2009) 2.27
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J Am Med Inform Assoc (2010) 1.94
Can graphene be used as a substrate for Raman enhancement? Nano Lett (2010) 1.78
Mitochondrial complex II in the post-ischemic heart: oxidative injury and the role of protein S-glutathionylation. J Biol Chem (2007) 1.68
Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine. J Proteome Res (2007) 1.66
Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record. Pharmacogenomics (2012) 1.66
A hybrid system for temporal information extraction from clinical text. J Am Med Inform Assoc (2013) 1.63
LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray. PLoS One (2012) 1.59
Phosphorylation of endothelial nitric-oxide synthase regulates superoxide generation from the enzyme. J Biol Chem (2008) 1.55
Isolation and identification of a Paenibacillus polymyxa strain that coproduces a novel lantibiotic and polymyxin. Appl Environ Microbiol (2006) 1.54
Tetraspanin CD37 directly mediates transduction of survival and apoptotic signals. Cancer Cell (2012) 1.52
Endothelium-derived nitric oxide regulates postischemic myocardial oxygenation and oxygen consumption by modulation of mitochondrial electron transport. Circulation (2005) 1.51
Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features. BMC Med Inform Decis Mak (2013) 1.46
Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly. Mol Cell (2005) 1.45
Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs. J Am Med Inform Assoc (2012) 1.43
Integrating existing natural language processing tools for medication extraction from discharge summaries. J Am Med Inform Assoc (2010) 1.41
Opioid use after cardiac surgery in children with Down syndrome. Pediatr Crit Care Med (2013) 1.40
A1 adenosine receptor knockout mice exhibit increased renal injury following ischemia and reperfusion. Am J Physiol Renal Physiol (2003) 1.38
Superoxide generation from mitochondrial NADH dehydrogenase induces self-inactivation with specific protein radical formation. J Biol Chem (2005) 1.38
Influence of source and drain contacts on the properties of indium-gallium-zinc-oxide thin-film transistors based on amorphous carbon nanofilm as barrier layer. ACS Appl Mater Interfaces (2015) 1.38
Applying active learning to high-throughput phenotyping algorithms for electronic health records data. J Am Med Inform Assoc (2013) 1.36
A flexible approach for highly multiplexed candidate gene targeted resequencing. PLoS One (2011) 1.35
H1 histones: current perspectives and challenges. Nucleic Acids Res (2013) 1.35
Shotgun lipidomic analysis of human meibomian gland secretions with electrospray ionization tandem mass spectrometry. Invest Ophthalmol Vis Sci (2010) 1.33
A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time. BMC Bioinformatics (2008) 1.31
A study of transportability of an existing smoking status detection module across institutions. AMIA Annu Symp Proc (2012) 1.31
Development and evaluation of an ensemble resource linking medications to their indications. J Am Med Inform Assoc (2013) 1.28
Identification of histone demethylases in Saccharomyces cerevisiae. J Biol Chem (2007) 1.28
Monte carlo simulation-based algorithms for analysis of shotgun proteomic data. J Proteome Res (2008) 1.26
Combined use of fasting plasma glucose and glycated hemoglobin A1c in the screening of diabetes and impaired glucose tolerance. Acta Diabetol (2009) 1.26
EBV-encoded dUTPase induces immune dysregulation: Implications for the pathophysiology of EBV-associated disease. Virology (2006) 1.25
Age-related changes in mesenchymal stem cells derived from rhesus macaque bone marrow. Aging Cell (2011) 1.24
Intronic miR-301 feedback regulates its host gene, ska2, in A549 cells by targeting MEOX2 to affect ERK/CREB pathways. Biochem Biophys Res Commun (2010) 1.23
Database search algorithm for identification of intact cross-links in proteins and peptides using tandem mass spectrometry. J Proteome Res (2010) 1.23
A comparative study of current Clinical Natural Language Processing systems on handling abbreviations in discharge summaries. AMIA Annu Symp Proc (2012) 1.22
Differential expression of histone post-translational modifications in acute myeloid and chronic lymphocytic leukemia determined by high-pressure liquid chromatography and mass spectrometry. J Am Soc Mass Spectrom (2004) 1.22
ICD-9 tobacco use codes are effective identifiers of smoking status. J Am Med Inform Assoc (2013) 1.22
In vivo contextual requirements for UAG translation as pyrrolysine. Mol Microbiol (2006) 1.21
The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients. Pharmacogenet Genomics (2012) 1.21
DNA methylation-regulated miR-193a-3p dictates resistance of hepatocellular carcinoma to 5-fluorouracil via repression of SRSF2 expression. J Biol Chem (2011) 1.19
[Study on 1389 men who have sex with men regarding their HIV high-risk behaviors and associated factors in mainland China in 2004]. Zhonghua Liu Xing Bing Xue Za Zhi (2007) 1.19
Peptide mass mapping of acetylated isoforms of histone H4 from mouse lymphosarcoma cells treated with histone deacetylase (HDACs) inhibitors. J Am Soc Mass Spectrom (2005) 1.19
Site-specific S-glutathiolation of mitochondrial NADH ubiquinone reductase. Biochemistry (2007) 1.19
Applying active learning to assertion classification of concepts in clinical text. J Biomed Inform (2011) 1.18
A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine. Proc Natl Acad Sci U S A (2007) 1.18
Applying active learning to supervised word sense disambiguation in MEDLINE. J Am Med Inform Assoc (2013) 1.17
Peroxynitrite induces destruction of the tetrahydrobiopterin and heme in endothelial nitric oxide synthase: transition from reversible to irreversible enzyme inhibition. Biochemistry (2010) 1.16
Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme. EMBO J (2010) 1.16
Synthesis and in vitro antimycobacterial activity of B-ring modified diaryl ether InhA inhibitors. Bioorg Med Chem Lett (2008) 1.15
The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine. Nature (2011) 1.14
Combining use of a panel of ssDNA aptamers in the detection of Staphylococcus aureus. Nucleic Acids Res (2009) 1.14
The residue mass of L-pyrrolysine in three distinct methylamine methyltransferases. J Biol Chem (2005) 1.14
Proteomic analysis of protein tyrosine nitration after ischemia reperfusion injury: mitochondria as the major target. Biochim Biophys Acta (2008) 1.14
A3 adenosine receptor knockout mice are protected against ischemia- and myoglobinuria-induced renal failure. Am J Physiol Renal Physiol (2002) 1.13
In vivo NCL targeting affects breast cancer aggressiveness through miRNA regulation. J Exp Med (2013) 1.13
Identification of fatty acids and fatty acid amides in human meibomian gland secretions. Invest Ophthalmol Vis Sci (2007) 1.12
Protein tyrosine nitration of the flavin subunit is associated with oxidative modification of mitochondrial complex II in the post-ischemic myocardium. J Biol Chem (2008) 1.12
Interdisciplinary dialogue for education, collaboration, and innovation: intelligent Biology and Medicine in and beyond 2013. BMC Genomics (2013) 1.11
Immunochemical detection of hemoglobin-derived radicals formed by reaction with hydrogen peroxide: involvement of a protein-tyrosyl radical. Free Radic Biol Med (2003) 1.11
Mass spectrometry-based proteomic analyses in contact lens-related dry eye. Cornea (2009) 1.11
The novel deacetylase inhibitor AR-42 demonstrates pre-clinical activity in B-cell malignancies in vitro and in vivo. PLoS One (2010) 1.11
Recognition of medication information from discharge summaries using ensembles of classifiers. BMC Med Inform Decis Mak (2012) 1.10
Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records. J Am Med Inform Assoc (2012) 1.10
Comparative study of SBP-box gene family in Arabidopsis and rice. Gene (2007) 1.09
Cathelicidin signaling via the Toll-like receptor protects against colitis in mice. Gastroenterology (2011) 1.09
Preterm and term cervical ripening in CD1 Mice (Mus musculus): similar or divergent molecular mechanisms? Biol Reprod (2009) 1.09
Preservation of mitochondrial function with cardiopulmonary resuscitation in prolonged cardiac arrest in rats. J Mol Cell Cardiol (2009) 1.08
Using contextual and lexical features to restructure and validate the classification of biomedical concepts. BMC Bioinformatics (2007) 1.07
Mechanism of 4-HNE mediated inhibition of hDDAH-1: implications in no regulation. Biochemistry (2008) 1.07
Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer. Genome Biol (2014) 1.05
Substance P modulates colitis-associated fibrosis. Am J Pathol (2010) 1.05
Shear-induced reactive nitrogen species inhibit mitochondrial respiratory complex activities in cultured vascular endothelial cells. Am J Physiol Cell Physiol (2006) 1.05
Identification of an aptamer targeting hnRNP A1 by tissue slide-based SELEX. J Pathol (2009) 1.04
Direct and indirect roles of cytochrome b in the mediation of superoxide generation and NO catabolism by mitochondrial succinate-cytochrome c reductase. J Biol Chem (2006) 1.04
Development of a natural language processing system to identify timing and status of colonoscopy testing in electronic medical records. AMIA Annu Symp Proc (2009) 1.03
Ischemic preconditioning prevents in vivo hyperoxygenation in postischemic myocardium with preservation of mitochondrial oxygen consumption. Am J Physiol Heart Circ Physiol (2007) 1.03
Involvement of protein radical, protein aggregation, and effects on NO metabolism in the hypochlorite-mediated oxidation of mitochondrial cytochrome c. Free Radic Biol Med (2004) 1.03
The radical trap 5,5-dimethyl-1-pyrroline N-oxide exerts dose-dependent protection against myocardial ischemia-reperfusion injury through preservation of mitochondrial electron transport. J Pharmacol Exp Ther (2009) 1.02
Identification of protein-derived tyrosyl radical in the reaction of cytochrome c and hydrogen peroxide: characterization by ESR spin-trapping, HPLC and MS. Biochem J (2002) 1.02
The role of tumor necrosis factor alpha in down-regulation of osteoblast Phex gene expression in experimental murine colitis. Gastroenterology (2006) 1.02
The tumor suppressive role of CAMK2N1 in castration-resistant prostate cancer. Oncotarget (2014) 1.01
Genomics in 2012: challenges and opportunities in the next generation sequencing era. BMC Genomics (2012) 1.01
Liquid chromatography mass spectrometry profiling of histones. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 1.00