Published in Methods Mol Biol on January 01, 2008
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Systematic discovery of Xist RNA binding proteins. Cell (2015) 2.26
Long non-coding RNA MALAT1 promotes tumour growth and metastasis in colorectal cancer through binding to SFPQ and releasing oncogene PTBP2 from SFPQ/PTBP2 complex. Br J Cancer (2014) 1.56
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes. Proc Natl Acad Sci U S A (2012) 1.56
Closing the loop: 3C versus DNA FISH. Genome Biol (2016) 1.01
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The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer. Genome Res (2015) 1.01
Stepwise activation of the ATR signaling pathway upon increasing replication stress impacts fragile site integrity. PLoS Genet (2013) 0.96
Rbm20 regulates titin alternative splicing as a splicing repressor. Nucleic Acids Res (2013) 0.95
Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis. Genes Dev (2015) 0.93
Efficient and versatile CRISPR engineering of human neurons in culture to model neurological disorders. Wellcome Open Res (2016) 0.92
Cdyl, a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2. Mol Cell Biol (2013) 0.92
Genetic and pharmacological reactivation of the mammalian inactive X chromosome. Proc Natl Acad Sci U S A (2014) 0.91
Higher-order looping and nuclear organization of Tcra facilitate targeted rag cleavage and regulated rearrangement in recombination centers. Cell Rep (2013) 0.90
3'-UTR-located inverted Alu repeats facilitate mRNA translational repression and stress granule accumulation. Nucleus (2012) 0.89
BAF180 promotes cohesion and prevents genome instability and aneuploidy. Cell Rep (2014) 0.86
Deletion of an X-inactivation boundary disrupts adjacent gene silencing. PLoS Genet (2013) 0.85
Combined immunofluorescence and DNA FISH on 3D-preserved interphase nuclei to study changes in 3D nuclear organization. J Vis Exp (2013) 0.84
SETDB1, HP1 and SUV39 promote repositioning of 53BP1 to extend resection during homologous recombination in G2 cells. Nucleic Acids Res (2015) 0.84
Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing. Epigenetics Chromatin (2016) 0.83
Combined DNA-RNA fluorescent in situ hybridization (FISH) to study X chromosome inactivation in differentiated female mouse embryonic stem cells. J Vis Exp (2014) 0.82
Quick fluorescent in situ hybridization protocol for Xist RNA combined with immunofluorescence of histone modification in X-chromosome inactivation. J Vis Exp (2014) 0.78
Active chromatin marks are retained on X chromosomes lacking gene or repeat silencing despite XIST/Xist expression in somatic cell hybrids. PLoS One (2010) 0.77
Identifying proteins that bind to specific RNAs - focus on simple repeat expansion diseases. Nucleic Acids Res (2016) 0.76
Methods for the analysis of early oogenesis in zebrafish. Dev Biol (2016) 0.76
Chromosomal aneuploidies induced upon Lamin B2 depletion are mislocalized in the interphase nucleus. Chromosoma (2016) 0.75
The "lnc" between 3D chromatin structure and X chromosome inactivation. Semin Cell Dev Biol (2016) 0.75
Allele-specific analysis of cell fusion-mediated pluripotent reprograming reveals distinct and predictive susceptibilities of human X-linked genes to reactivation. Genome Biol (2017) 0.75
Transcriptional Analysis by Nascent RNA FISH of In Vivo Trophoblast Giant Cells or In Vitro Short-term Cultures of Ectoplacental Cone Explants. J Vis Exp (2016) 0.75
Lamin B2 modulates nucleolar morphology, dynamics and function. Mol Cell Biol (2017) 0.75
Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence. Cell (2003) 11.40
Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature (2012) 9.75
Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol Cell Biol (2006) 5.99
Epigenetic dynamics of imprinted X inactivation during early mouse development. Science (2003) 5.80
LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation. Cell (2010) 3.70
Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation. Nat Cell Biol (2006) 3.66
Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes. Nat Genet (2001) 3.63
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced. Genes Dev (2006) 3.41
Imprinted X-inactivation in extra-embryonic endoderm cell lines from mouse blastocysts. Development (2005) 2.91
Retracted RNAi-dependent and independent control of LINE1 accumulation and mobility in mouse embryonic stem cells. PLoS Genet (2013) 2.91
Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development. Nature (2011) 2.75
The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA. Genes Dev (2011) 2.53
Regulation of X-chromosome inactivation by the X-inactivation centre. Nat Rev Genet (2011) 2.50
Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development. Mol Cell Biol (2009) 2.47
Evidence for de novo imprinted X-chromosome inactivation independent of meiotic inactivation in mice. Nature (2005) 2.46
Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome. Mol Cell Biol (2004) 2.43
Role of histone methyltransferase G9a in CpG methylation of the Prader-Willi syndrome imprinting center. J Biol Chem (2003) 2.25
X inactivation and the complexities of silencing a sex chromosome. Curr Opin Cell Biol (2009) 2.09
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments. Genome Res (2013) 2.05
High-resolution analysis of epigenetic changes associated with X inactivation. Genome Res (2009) 2.02
Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation. PLoS Genet (2009) 1.96
The pluripotent genome in three dimensions is shaped around pluripotency factors. Nature (2013) 1.82
Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One (2011) 1.82
MicroRNA regulation of Cbx7 mediates a switch of Polycomb orthologs during ESC differentiation. Cell Stem Cell (2012) 1.72
Antisense RNA in imprinting: spreading silence through Air. Trends Genet (2002) 1.57
Dynamic changes in paternal X-chromosome activity during imprinted X-chromosome inactivation in mice. Proc Natl Acad Sci U S A (2009) 1.56
Smchd1-dependent and -independent pathways determine developmental dynamics of CpG island methylation on the inactive X chromosome. Dev Cell (2012) 1.47
Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods? Bioessays (2013) 1.45
Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation. Cell (2011) 1.36
HiTC: exploration of high-throughput 'C' experiments. Bioinformatics (2012) 1.29
An essential role for the DXPas34 tandem repeat and Tsix transcription in the counting process of X chromosome inactivation. Proc Natl Acad Sci U S A (2006) 1.28
Noncoding RNAs and epigenetic mechanisms during X-chromosome inactivation. Annu Rev Cell Dev Biol (2014) 1.25
Evolutionary diversity and developmental regulation of X-chromosome inactivation. Hum Genet (2011) 1.20
Structural organization of the inactive X chromosome in the mouse. Nature (2016) 1.15
Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles. RNA (2011) 1.13
Relationship of XIST expression and responses of ovarian cancer to chemotherapy. Mol Cancer Ther (2002) 1.13
X-chromosome inactivation in mouse embryonic stem cells: analysis of histone modifications and transcriptional activity using immunofluorescence and FISH. Methods Enzymol (2004) 1.12
X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors. Cancer Res (2007) 1.12
Role and control of X chromosome dosage in mammalian development. Curr Opin Genet Dev (2013) 1.12
Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. Mol Cell Biol (2013) 1.07
A phosphorylated subpopulation of the histone variant macroH2A1 is excluded from the inactive X chromosome and enriched during mitosis. Proc Natl Acad Sci U S A (2008) 1.07
Initiation of epigenetic reprogramming of the X chromosome in somatic nuclei transplanted to a mouse oocyte. EMBO Rep (2005) 1.05
Recent advances in X-chromosome inactivation research. Curr Opin Cell Biol (2012) 1.05
Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions. J Cell Biol (2010) 1.04
Fifty years of X-inactivation research. Development (2011) 1.04
Deep-sequencing protocols influence the results obtained in small-RNA sequencing. PLoS One (2012) 1.03
Lessons from comparative analysis of X-chromosome inactivation in mammals. Chromosome Res (2009) 1.03
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. Bioinformatics (2012) 0.98
Nuclear organization and dosage compensation. Cold Spring Harb Perspect Biol (2010) 0.94
Unusual chromatin status and organization of the inactive X chromosome in murine trophoblast giant cells. Development (2013) 0.93
Non-rigid registration of 3D multi-channel microscopy images of cell nuclei. Med Image Comput Comput Assist Interv (2006) 0.92
Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. Bioinformatics (2010) 0.87
X chromosome inactivation: when dosage counts. Cell (2009) 0.85
Beyond sense: the role of antisense RNA in controlling Xist expression. Semin Cell Dev Biol (2003) 0.83
Live-cell imaging combined with immunofluorescence, RNA, or DNA FISH to study the nuclear dynamics and expression of the X-inactivation center. Methods Mol Biol (2013) 0.81
Small RNAs derived from structural non-coding RNAs. Methods (2013) 0.79
Changes in the organization of the genome during the mammalian cell cycle. Genome Biol (2013) 0.77
High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale. Methods Mol Biol (2015) 0.76
Correction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells. PLoS Genet (2015) 0.75
Rnf12--a jack of all trades in X inactivation? PLoS Genet (2011) 0.75
LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation. Cell (2016) 0.75
Cell nucleus. Curr Opin Cell Biol (2013) 0.75
Corrigendum: Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells. Nat Genet (2017) 0.75
US Military Child and Adolescent Psychiatry Training Programs and Careers of Military Child Psychiatrists. Acad Psychiatry (2015) 0.75
The dynamics of epigenetic changes in a range of organisms. Curr Top Dev Biol (2013) 0.75
[Inactivation of X chromosome: cells know how to count two X chromosomes]. Med Sci (Paris) (2008) 0.75
[Establishing transcriptional silencing of the X chromosome during early embryogenesis]. Biol Aujourdhui (2010) 0.75
Epigenetic mechanisms in development and disease. Semin Cell Dev Biol (2010) 0.75
[Initiation of X chromosome inactivation during early embryogenesis in mice and in humans]. Bull Acad Natl Med (2013) 0.75
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