Protein structure homology modeling using SWISS-MODEL workspace.

PubWeight™: 5.42‹?› | Rank: Top 1%

🔗 View Article (PMID 19131951)

Published in Nat Protoc on January 01, 2009

Authors

Lorenza Bordoli1, Florian Kiefer, Konstantin Arnold, Pascal Benkert, James Battey, Torsten Schwede

Author Affiliations

1: Biozentrum, University of Basel, Klingelbergstrasse 50-70, CH 4056 Basel, Switzerland.

Articles citing this

(truncated to the top 100)

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res (2014) 8.86

Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics (2010) 5.08

Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins (2009) 3.64

QMEAN server for protein model quality estimation. Nucleic Acids Res (2009) 3.39

Excess of de novo deleterious mutations in genes associated with glutamatergic systems in nonsyndromic intellectual disability. Am J Hum Genet (2011) 2.86

The Protein Model Portal--a comprehensive resource for protein structure and model information. Database (Oxford) (2013) 2.76

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun (2013) 1.80

Bacillus thuringiensis: a genomics and proteomics perspective. Bioeng Bugs (2011) 1.77

Deaminase-independent inhibition of parvoviruses by the APOBEC3A cytidine deaminase. PLoS Pathog (2009) 1.65

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proc Natl Acad Sci U S A (2012) 1.61

Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa. Sci Rep (2015) 1.49

Optical control of metabotropic glutamate receptors. Nat Neurosci (2013) 1.45

Interferon lambda 4 signals via the IFNλ receptor to regulate antiviral activity against HCV and coronaviruses. EMBO J (2013) 1.40

Unexpected challenges in treating multidrug-resistant Gram-negative bacteria: resistance to ceftazidime-avibactam in archived isolates of Pseudomonas aeruginosa. Antimicrob Agents Chemother (2014) 1.24

APOBEC3B and AID have similar nuclear import mechanisms. J Mol Biol (2012) 1.22

OpenStructure: a flexible software framework for computational structural biology. Bioinformatics (2010) 1.22

Mechanical coupling maintains the fidelity of NMDA receptor-mediated currents. Nat Neurosci (2014) 1.14

Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS One (2009) 1.13

Characterization of phospholipase C gamma enzymes with gain-of-function mutations. J Biol Chem (2009) 1.09

The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes. Nucleic Acids Res (2009) 1.08

Modelling three-dimensional protein structures for applications in drug design. Drug Discov Today (2013) 1.05

Protease-activated receptor 1 (PAR1) and PAR4 heterodimers are required for PAR1-enhanced cleavage of PAR4 by α-thrombin. J Biol Chem (2013) 1.04

A new bright green-emitting fluorescent protein--engineered monomeric and dimeric forms. FEBS J (2010) 1.04

Structure-based discovery of antibacterial drugs. Nat Rev Microbiol (2010) 1.04

Structure of the mammalian ribosomal pre-termination complex associated with eRF1.eRF3.GDPNP. Nucleic Acids Res (2013) 1.02

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. J Proteome Res (2013) 1.00

Cross-phosphorylation of bacterial serine/threonine and tyrosine protein kinases on key regulatory residues. Front Microbiol (2014) 1.00

Design of meningococcal factor H binding protein mutant vaccines that do not bind human complement factor H. Infect Immun (2012) 0.99

Crystal structure of the Gtr1p(GTP)-Gtr2p(GDP) protein complex reveals large structural rearrangements triggered by GTP-to-GDP conversion. J Biol Chem (2012) 0.97

Structural annotation of Mycobacterium tuberculosis proteome. PLoS One (2011) 0.97

Hypomorphic temperature-sensitive alleles of NSDHL cause CK syndrome. Am J Hum Genet (2010) 0.97

Chemical genetics of zipper-interacting protein kinase reveal myosin light chain as a bona fide substrate in permeabilized arterial smooth muscle. J Biol Chem (2011) 0.97

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic Acids Res (2015) 0.95

Identification of enoxacin as an inhibitor of osteoclast formation and bone resorption by structure-based virtual screening. J Med Chem (2009) 0.95

The cholesterol-dependent cytolysins pneumolysin and streptolysin O require binding to red blood cell glycans for hemolytic activity. Proc Natl Acad Sci U S A (2014) 0.94

Directed evolution of a far-red fluorescent rhodopsin. Proc Natl Acad Sci U S A (2014) 0.94

Locking and blocking the viral landscape of an alphavirus with neutralizing antibodies. J Virol (2014) 0.94

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. BMC Genomics (2014) 0.94

Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria. Proc Natl Acad Sci U S A (2013) 0.93

Mapping human protease-activated receptor 4 (PAR4) homodimer interface to transmembrane helix 4. J Biol Chem (2012) 0.93

Multiple interactions between cytoplasmic domains regulate slow deactivation of Kv11.1 channels. J Biol Chem (2014) 0.93

Diuresis and reduced urinary osmolality in rats produced by small-molecule UT-A-selective urea transport inhibitors. FASEB J (2014) 0.93

The emerging role of RNA-binding proteins in the life cycle of Trypanosoma brucei. Cell Microbiol (2014) 0.93

Kinetic characterization and phosphoregulation of the Francisella tularensis 1-deoxy-D-xylulose 5-phosphate reductoisomerase (MEP synthase). PLoS One (2009) 0.93

Cysteine peptidases and their inhibitors in Tetranychus urticae: a comparative genomic approach. BMC Genomics (2012) 0.92

Drug metabolism by CYP2C8.3 is determined by substrate dependent interactions with cytochrome P450 reductase and cytochrome b5. Biochem Pharmacol (2011) 0.92

Engineered single-domain antibodies with high protease resistance and thermal stability. PLoS One (2011) 0.92

Monoclonal antibodies neutralize Bacillus cereus Nhe enterotoxin by inhibiting ordered binding of its three exoprotein components. Infect Immun (2011) 0.91

Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum. Biochim Biophys Acta (2010) 0.91

Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery. PLoS Pathog (2012) 0.91

Analysis of ADP-glucose pyrophosphorylase expression during turion formation induced by abscisic acid in Spirodela polyrhiza (greater duckweed). BMC Plant Biol (2012) 0.91

Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora. J Biol Chem (2012) 0.90

Selectivity of fungal sesquiterpene synthases: role of the active site's H-1 alpha loop in catalysis. Appl Environ Microbiol (2010) 0.90

The cardiac acetyl-lysine proteome. PLoS One (2013) 0.90

Essential amino acid residues of BioY reveal that dimers are the functional S unit of the Rhodobacter capsulatus biotin transporter. J Bacteriol (2012) 0.89

Activating mutations in TOR are in similar structures as oncogenic mutations in PI3KCalpha. ACS Chem Biol (2009) 0.89

Recruitment of glycosyl hydrolase proteins in a cone snail venomous arsenal: further insights into biomolecular features of Conus venoms. Mar Drugs (2012) 0.89

Structural analysis of Mg2+ and Ca2+ binding, myristoylation, and dimerization of the neuronal calcium sensor and visinin-like protein 1 (VILIP-1). J Biol Chem (2010) 0.89

Identification and suppression of the p-coumaroyl CoA:hydroxycinnamyl alcohol transferase in Zea mays L. Plant J (2014) 0.88

Hal Is a Bacillus anthracis heme acquisition protein. J Bacteriol (2012) 0.88

Sesquiterpene synthases Cop4 and Cop6 from Coprinus cinereus: catalytic promiscuity and cyclization of farnesyl pyrophosphate geometric isomers. Chembiochem (2010) 0.88

Structure and assembly of an inner membrane platform for initiation of type IV pilus biogenesis. Proc Natl Acad Sci U S A (2013) 0.88

Calcineurin orchestrates dimorphic transitions, antifungal drug responses and host-pathogen interactions of the pathogenic mucoralean fungus Mucor circinelloides. Mol Microbiol (2015) 0.88

Distinct genetic architectures for syndromic and nonsyndromic congenital heart defects identified by exome sequencing. Nat Genet (2016) 0.88

Structure-function analysis of STRUBBELIG, an Arabidopsis atypical receptor-like kinase involved in tissue morphogenesis. PLoS One (2011) 0.87

Mutations in the glycoprotein of vesicular stomatitis virus affect cytopathogenicity: potential for oncolytic virotherapy. J Virol (2011) 0.87

Eukaryotic extracellular catalase-peroxidase from Magnaporthe grisea - Biophysical/chemical characterization of the first representative from a novel phytopathogenic KatG group. Biochimie (2011) 0.87

Illustrating and homology modeling the proteins of the Zika virus. F1000Res (2016) 0.86

A novel missense mutation in the connexin30 causes nonsyndromic hearing loss. PLoS One (2011) 0.86

The RclR protein is a reactive chlorine-specific transcription factor in Escherichia coli. J Biol Chem (2013) 0.86

Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi. Gene (2009) 0.86

A cathepsin F-like peptidase involved in barley grain protein mobilization, HvPap-1, is modulated by its own propeptide and by cystatins. J Exp Bot (2012) 0.86

Membrane binding and subcellular localization of retroviral Gag proteins are differentially regulated by MA interactions with phosphatidylinositol-(4,5)-bisphosphate and RNA. MBio (2014) 0.86

The coenzyme A disulphide reductase of Borrelia burgdorferi is important for rapid growth throughout the enzootic cycle and essential for infection of the mammalian host. Mol Microbiol (2011) 0.86

GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm. Plant Cell (2014) 0.85

Functional and structural identification of amino acid residues of the P2X2 receptor channel critical for the voltage- and [ATP]-dependent gating. J Physiol (2009) 0.85

Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton. Front Plant Sci (2013) 0.85

Cleavage specificity analysis of six type II transmembrane serine proteases (TTSPs) using PICS with proteome-derived peptide libraries. PLoS One (2014) 0.85

Complex formation between NheB and NheC is necessary to induce cytotoxic activity by the three-component Bacillus cereus Nhe enterotoxin. PLoS One (2013) 0.85

Serine phosphorylation is critical for the activation of ubiquitin-specific protease 1 and its interaction with WD40-repeat protein UAF1. Biochemistry (2012) 0.85

Structural and biochemical studies of the hedamycin type II polyketide ketoreductase (HedKR): molecular basis of stereo- and regiospecificities. Biochemistry (2011) 0.84

Structural and biochemical characterization of the vaccinia virus envelope protein D8 and its recognition by the antibody LA5. J Virol (2012) 0.84

Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase. Acta Crystallogr D Biol Crystallogr (2012) 0.84

Ovalbumin-related protein X is a heparin-binding ov-serpin exhibiting antimicrobial activities. J Biol Chem (2013) 0.84

HcpR of Porphyromonas gingivalis is required for growth under nitrosative stress and survival within host cells. Infect Immun (2012) 0.84

Prediction of the functional effect of novel SLC25A13 variants using a S. cerevisiae model of AGC2 deficiency. J Inherit Metab Dis (2012) 0.84

Single point mutations in the small cytoplasmic loop of ACA8, a plasma membrane Ca2+-ATPase of Arabidopsis thaliana, generate partially deregulated pumps. J Biol Chem (2009) 0.84

Cardiolipin Interactions with Proteins. Biophys J (2015) 0.83

Identification of functionally important conserved trans-membrane residues of bacterial PIB -type ATPases. Mol Microbiol (2014) 0.83

Short RNA molecules with high binding affinity to the KH motif of A-kinase anchoring protein 1 (AKAP1): implications for the regulation of steroidogenesis. Mol Endocrinol (2012) 0.83

Two alcohol binding residues interact across a domain interface of the L1 neural cell adhesion molecule and regulate cell adhesion. J Biol Chem (2011) 0.83

Deceleration of the E1P-E2P transition and ion transport by mutation of potentially salt bridge-forming residues Lys-791 and Glu-820 in gastric H+/K+-ATPase. J Biol Chem (2010) 0.83

Fluoxetine, an antidepressant, suppresses glioblastoma by evoking AMPAR-mediated calcium-dependent apoptosis. Oncotarget (2015) 0.83

Pore helices play a dynamic role as integrators of domain motion during Kv11.1 channel inactivation gating. J Biol Chem (2013) 0.83

Detecting Aquaporin Function and Regulation. Front Chem (2016) 0.83

Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability. PLoS Negl Trop Dis (2010) 0.83

In silico cloning and characterization of the glycerol-3-phosphate dehydrogenase (GPDH) gene family in the green microalga Chlamydomonas reinhardtii. Curr Microbiol (2012) 0.82

Clinical, molecular and functional investigation on an infant with neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD). PLoS One (2014) 0.82

Listeria monocytogenes aguA1, but not aguA2, encodes a functional agmatine deiminase: biochemical characterization of its catalytic properties and roles in acid tolerance. J Biol Chem (2013) 0.82

Efflux-mediated fluoroquinolone resistance in the multidrug-resistant Pseudomonas aeruginosa clinical isolate PA7: identification of a novel MexS variant involved in upregulation of the mexEF-oprN multidrug efflux operon. Front Microbiol (2015) 0.82

Articles cited by this

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31

Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol (1993) 64.61

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis (1997) 57.27

The Pfam protein families database. Nucleic Acids Res (2004) 56.46

Inference of macromolecular assemblies from crystalline state. J Mol Biol (2007) 44.95

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (2005) 34.83

Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol (1999) 33.07

The Pfam protein families database. Nucleic Acids Res (2007) 30.53

InterProScan--an integration platform for the signature-recognition methods in InterPro. Bioinformatics (2001) 28.35

SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res (2003) 25.86

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2005) 22.98

The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70

Protein homology detection by HMM-HMM comparison. Bioinformatics (2004) 21.92

The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res (2005) 21.68

Errors in protein structures. Nature (1996) 18.70

Comparative protein structure modeling of genes and genomes. Annu Rev Biophys Biomol Struct (2000) 17.81

Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol (2005) 17.63

The relation between the divergence of sequence and structure in proteins. EMBO J (1986) 16.66

SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res (2004) 15.21

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res (2006) 13.44

New developments in the InterPro database. Nucleic Acids Res (2007) 12.49

Protein structure prediction and structural genomics. Science (2001) 11.76

Twilight zone of protein sequence alignments. Protein Eng (1999) 9.83

Modeling of loops in protein structures. Protein Sci (2000) 9.68

A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci (2003) 9.25

PQS: a protein quaternary structure file server. Trends Biochem Sci (1998) 9.24

The PROSITE database. Nucleic Acids Res (2006) 8.11

Proteins. One thousand families for the molecular biologist. Nature (1992) 7.83

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci (2002) 7.40

A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry (1994) 6.64

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J Mol Biol (1990) 6.08

The extended protein kinase C superfamily. Biochem J (1998) 5.84

Determining the architectures of macromolecular assemblies. Nature (2007) 4.94

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins (2001) 4.85

Assessing protein structures with a non-local atomic interaction energy. J Mol Biol (1998) 4.42

Natively unfolded proteins. Curr Opin Struct Biol (2005) 4.39

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res (2004) 4.30

QMEAN: A comprehensive scoring function for model quality assessment. Proteins (2008) 3.90

Intrinsic disorder and functional proteomics. Biophys J (2006) 3.84

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res (2006) 3.84

Tools for comparative protein structure modeling and analysis. Nucleic Acids Res (2003) 3.68

Modeling structurally variable regions in homologous proteins with rosetta. Proteins (2004) 3.64

Assessment of CASP7 predictions for template-based modeling targets. Proteins (2007) 3.50

Automated server predictions in CASP7. Proteins (2007) 3.40

The base excision repair pathway. Trends Biochem Sci (1995) 3.24

Crystal structure of the cys2 activator-binding domain of protein kinase C delta in complex with phorbol ester. Cell (1995) 3.08

A mechanistic perspective on the chemistry of DNA repair glycosylases. Chem Rev (2003) 2.84

Topological characteristics of helical repeat proteins. Curr Opin Struct Biol (1999) 2.75

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding. Structure (1996) 2.53

EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res (2003) 2.50

Predicting reliable regions in protein alignments from sequence profiles. J Mol Biol (2003) 2.42

Identification of correct regions in protein models using structural, alignment, and consensus information. Protein Sci (2006) 2.39

Protein structure computing in the genomic era. Res Microbiol (2000) 2.38

Assessment of homology-based predictions in CASP5. Proteins (2003) 2.29

Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins (2005) 2.27

Prediction of disordered regions in proteins from position specific score matrices. Proteins (2003) 2.09

About the use of protein models. Bioinformatics (2002) 2.05

Progress from CASP6 to CASP7. Proteins (2007) 2.04

Assessment of CASP7 structure predictions for template free targets. Proteins (2007) 1.98

Utility of homology models in the drug discovery process. Drug Discov Today (2004) 1.98

Loop modeling: Sampling, filtering, and scoring. Proteins (2008) 1.81

Sequence comparison and protein structure prediction. Curr Opin Struct Biol (2006) 1.70

Conducting research on the web: 2007 update for the bioinformatics links directory. Nucleic Acids Res (2007) 1.66

Protein complexes: structure prediction challenges for the 21st century. Curr Opin Struct Biol (2005) 1.43

The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Mol Biol Cell (2006) 1.42

M4T: a comparative protein structure modeling server. Nucleic Acids Res (2007) 1.32

Automated protein structure homology modeling: a progress report. Pharmacogenomics (2004) 1.19

A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD. Mol Microbiol (2006) 1.11

Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats. Nucleic Acids Res (2007) 1.06

Local quality assessment in homology models using statistical potentials and support vector machines. Protein Sci (2007) 1.00

An assessment of COMPOSER: a rule-based approach to modelling protein structure. Biochem Soc Symp (1990) 0.92

Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinformatics (2006) 0.89

Near-optimal sequence alignment. Curr Opin Struct Biol (1996) 0.88

Membrane phospholipid degradation and protein kinase C for cell signalling. Neurosci Res (1992) 0.85

Articles by these authors

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (2005) 34.83

The SWISS-MODEL Repository and associated resources. Nucleic Acids Res (2008) 11.61

Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics (2010) 5.08

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res (2004) 4.30

Critical assessment of methods of protein structure prediction (CASP)--round x. Proteins (2013) 3.78

ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res (2012) 3.70

Assessment of CASP7 predictions for template-based modeling targets. Proteins (2007) 3.50

Automated server predictions in CASP7. Proteins (2007) 3.40

QMEAN server for protein model quality estimation. Nucleic Acids Res (2009) 3.39

Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: a historical perspective. Electrophoresis (2009) 3.25

The SWISS-MODEL Repository: new features and functionalities. Nucleic Acids Res (2006) 3.00

The Protein Model Portal--a comprehensive resource for protein structure and model information. Database (Oxford) (2013) 2.76

Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes Dev (2009) 2.44

Outcome of a workshop on archiving structural models of biological macromolecules. Structure (2006) 2.32

Assessment of template based protein structure predictions in CASP9. Proteins (2011) 2.14

The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res (2008) 2.03

The Protein Model Portal. J Struct Funct Genomics (2008) 2.01

CASP9 target classification. Proteins (2011) 1.75

Assessment of the assessment: evaluation of the model quality estimates in CASP10. Proteins (2013) 1.60

Assessment of disorder predictions in CASP7. Proteins (2007) 1.51

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics (2013) 1.50

Assessment of ligand-binding residue predictions in CASP9. Proteins (2011) 1.47

The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Mol Biol Cell (2006) 1.42

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Structure (2013) 1.39

The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. J Struct Funct Genomics (2011) 1.36

QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information. BMC Struct Biol (2009) 1.33

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust. Proteins (2009) 1.24

Domain definition and target classification for CASP7. Proteins (2007) 1.23

OpenStructure: a flexible software framework for computational structural biology. Bioinformatics (2010) 1.22

Automated protein structure homology modeling: a progress report. Pharmacogenomics (2004) 1.19

Mutations in the TMPRSS3 gene are a rare cause of childhood nonsyndromic deafness in Caucasian patients. J Mol Med (Berl) (2001) 1.19

Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal. Methods Mol Biol (2012) 1.18

Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology. J Biol Chem (2007) 1.17

Novel inhibitors of dengue virus methyltransferase: discovery by in vitro-driven virtual screening on a desktop computer grid. J Med Chem (2010) 1.13

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins (2014) 1.12

The mouse eugenol odorant receptor: structural and functional plasticity of a broadly tuned odorant binding pocket. Biochemistry (2010) 1.10

How inaccuracies in protein structure models affect estimates of protein-ligand interactions: computational analysis of HIV-I protease inhibitor binding. Proteins (2006) 1.08

Comparison of 68Ga-DOTANOC and 68Ga-DOTATATE PET/CT within patients with gastroenteropancreatic neuroendocrine tumors. J Nucl Med (2013) 1.08

Asp1424Asn MYH9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly/Fechtner syndrome. Blood (2003) 1.04

Novel cargo-binding site in the beta and delta subunits of coatomer. J Cell Biol (2007) 1.00

Assessment of ligand binding site predictions in CASP10. Proteins (2014) 0.93

Sulfonylureas and glinides exhibit peroxisome proliferator-activated receptor gamma activity: a combined virtual screening and biological assay approach. Mol Pharmacol (2006) 0.89

Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins (2011) 0.89

Improving your target-template alignment with MODalign. Bioinformatics (2012) 0.89

Covalent and three-dimensional structure of the cyclodextrinase from Flavobacterium sp. no. 92. Eur J Biochem (2003) 0.83

Refinement of unbound protein docking studies using biological knowledge. Proteins (2005) 0.81

Dual activities of odorants on olfactory and nuclear hormone receptors. J Biol Chem (2009) 0.79

Computational analysis of methyl transfer reactions in dengue virus methyltransferase. J Phys Chem B (2014) 0.78

Zinc-selective inhibition of the promiscuous bacterial amide-hydrolase DapE: implications of metal heterogeneity for evolution and antibiotic drug design. Metallomics (2014) 0.77

Diagnosis and treatment of iron deficiency in medical inpatients at a Swiss tertiary university referral hospital: a retrospective observational cohort study of clinical practice. Swiss Med Wkly (2013) 0.75

ECCB 2012: The 11th European Conference on Computational Biology. Bioinformatics (2012) 0.75