Published in Nucleic Acids Res on January 20, 2009
Differential DNA mismatch repair underlies mutation rate variation across the human genome. Nature (2015) 1.34
DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae. Genetics (2013) 1.17
Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions. Nucleic Acids Res (2010) 1.06
Drosophila p53 is required to increase the levels of the dKDM4B demethylase after UV-induced DNA damage to demethylate histone H3 lysine 9. J Biol Chem (2010) 0.97
Chromatin modifications and DNA repair: beyond double-strand breaks. Front Genet (2014) 0.96
Evidence that the histone methyltransferase Dot1 mediates global genomic repair by methylating histone H3 on lysine 79. J Biol Chem (2011) 0.95
A cassette of N-terminal amino acids of histone H2B are required for efficient cell survival, DNA repair and Swi/Snf binding in UV irradiated yeast. Nucleic Acids Res (2009) 0.95
High-resolution characterization of CPD hotspot formation in human fibroblasts. Nucleic Acids Res (2013) 0.94
Loss of H3 K79 trimethylation leads to suppression of Rtt107-dependent DNA damage sensitivity through the translesion synthesis pathway. J Biol Chem (2010) 0.92
Sirtuins in epigenetic regulation. Chem Rev (2015) 0.88
Novel functional residues in the core domain of histone H2B regulate yeast gene expression and silencing and affect the response to DNA damage. Mol Cell Biol (2010) 0.85
Silenced yeast chromatin is maintained by Sir2 in preference to permitting histone acetylations for efficient NER. Nucleic Acids Res (2010) 0.82
Chromatin structure following UV-induced DNA damage-repair or death? Int J Mol Sci (2011) 0.82
Implication of posttranslational histone modifications in nucleotide excision repair. Int J Mol Sci (2012) 0.82
Overview for the histone codes for DNA repair. Prog Mol Biol Transl Sci (2012) 0.81
Histone ubiquitylation and its roles in transcription and DNA damage response. DNA Repair (Amst) (2015) 0.78
Histone variant Htz1 promotes histone H3 acetylation to enhance nucleotide excision repair in Htz1 nucleosomes. Nucleic Acids Res (2013) 0.78
Contributions of histone H3 nucleosome core surface mutations to chromatin structures, silencing and DNA repair. PLoS One (2011) 0.76
Histone H3 K79 methylation states play distinct roles in UV-induced sister chromatid exchange and cell cycle checkpoint arrest in Saccharomyces cerevisiae. Nucleic Acids Res (2014) 0.76
Repair of UV-induced DNA lesions in natural Saccharomyces cerevisiae telomeres is moderated by Sir2 and Sir3, and inhibited by yKu-Sir4 interaction. Nucleic Acids Res (2017) 0.75
Histone modifications as regulators of life and death in Saccharomyces cerevisiae. Microb Cell (2015) 0.75
A Novel Histone Crosstalk Pathway Important for Regulation of UV-Induced DNA Damage Repair in Saccharomyces cerevisiae. Genetics (2017) 0.75
Translating the histone code. Science (2001) 56.77
Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell (1987) 8.23
Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell (2006) 8.12
DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell (1985) 7.62
The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae. Annu Rev Biochem (2003) 7.22
In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment. Methods (1999) 6.76
Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks. Nature (2004) 6.72
Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell (2002) 6.29
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell (2004) 4.99
Activation of Rad53 kinase in response to DNA damage and its effect in modulating phosphorylation of the lagging strand DNA polymerase. EMBO J (1999) 4.64
Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association. Genes Dev (2002) 4.07
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell (2001) 4.06
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression. J Biol Chem (2002) 4.05
Molecular mechanisms of mammalian global genome nucleotide excision repair. Chem Rev (2006) 3.38
Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions. EMBO J (2001) 3.27
Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation. Proc Natl Acad Sci U S A (2003) 3.09
Common themes in mechanisms of gene silencing. Mol Cell (2001) 2.88
Regulated nucleosome mobility and the histone code. Nat Struct Mol Biol (2004) 2.76
A core nucleosome surface crucial for transcriptional silencing. Nat Genet (2002) 2.67
Cellular machineries for chromosomal DNA repair. Genes Dev (2004) 2.66
Nucleotide excision repair in yeast. Mutat Res (2000) 2.54
Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc Natl Acad Sci U S A (1992) 2.41
The DNA damage checkpoint response requires histone H2B ubiquitination by Rad6-Bre1 and H3 methylation by Dot1. J Biol Chem (2005) 2.27
The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Mol Cell Biol (1994) 2.26
Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev (2003) 2.15
When repair meets chromatin. First in series on chromatin dynamics. EMBO Rep (2002) 2.07
Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair. EMBO J (1999) 1.89
UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation. EMBO J (2001) 1.81
Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin. J Biol Chem (2004) 1.78
Complicated tails: histone modifications and the DNA damage response. Cell (2005) 1.74
Chromatin analysis in yeast using NP-40 permeabilised sphaeroplasts. Nucleic Acids Res (1993) 1.72
Differential repair of UV damage in Saccharomyces cerevisiae. Nucleic Acids Res (1989) 1.67
DNA repair and the role of chromatin structure. Curr Opin Cell Biol (1991) 1.52
Chromatin structure snap-shots: rapid nuclease digestion of chromatin in yeast. Nucleic Acids Res (1995) 1.49
UV irradiation stimulates histone acetylation and chromatin remodeling at a repressed yeast locus. Proc Natl Acad Sci U S A (2005) 1.43
Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae. EMBO J (2002) 1.36
Differential repair of UV damage in rad mutants of Saccharomyces cerevisiae: a possible function of G2 arrest upon UV irradiation. Mol Cell Biol (1990) 1.31
Redundant roles for histone H3 N-terminal lysine residues in subtelomeric gene repression in Saccharomyces cerevisiae. Genetics (2004) 1.30
Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor. J Biol Chem (1997) 1.27
Histone modifications in response to DNA damage. Mutat Res (2007) 1.25
Nucleotide excision repair in chromatin and the right of entry. DNA Repair (Amst) (2005) 1.23
Interaction of the yeast RAD7 and SIR3 proteins: implications for DNA repair and chromatin structure. Genes Dev (1994) 1.21
Methylation of histone H3 lysine-79 by Dot1p plays multiple roles in the response to UV damage in Saccharomyces cerevisiae. DNA Repair (Amst) (2007) 1.21
Yeast autonomously replicating sequence binding factor is involved in nucleotide excision repair. Genes Dev (1999) 1.17
Repair of UV lesions in nucleosomes--intrinsic properties and remodeling. DNA Repair (Amst) (2005) 1.10
Repair of UV lesions in silenced chromatin provides in vivo evidence for a compact chromatin structure. J Biol Chem (2003) 1.07
The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Mol Cell Biol (2006) 1.06
Saccharomyces cerevisiae Rad16 mediates ultraviolet-dependent histone H3 acetylation required for efficient global genome nucleotide-excision repair. EMBO Rep (2007) 1.04
Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae. Mol Cell Biol (2007) 0.92
A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast. Nucleic Acids Res (2008) 0.92
Regulation of the Saccharomyces cerevisiae DNA repair gene RAD16. Nucleic Acids Res (1995) 0.89
Nucleotide excision repair in chromatin: the shape of things to come. DNA Repair (Amst) (2005) 0.85
UV sensitive mutations in histone H3 in Saccharomyces cerevisiae that alter specific K79 methylation states genetically act through distinct DNA repair pathways. Curr Genet (2008) 0.83
Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (2002) 43.52
Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences. Bioinformatics (2005) 2.41
Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes. Proc Natl Acad Sci U S A (2003) 1.60
Nucleosome structure and repair of N-methylpurines in the GAL1-10 genes of Saccharomyces cerevisiae. J Biol Chem (2002) 1.53
Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair. Nat Struct Mol Biol (2006) 1.51
Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae. EMBO J (2002) 1.36
Redundant roles for histone H3 N-terminal lysine residues in subtelomeric gene repression in Saccharomyces cerevisiae. Genetics (2004) 1.30
Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription. Mol Cell Biol (2006) 1.28
Role of the mammalian SWI/SNF chromatin remodeling complex in the cellular response to UV damage. Cell Cycle (2008) 1.25
Nucleotide excision repair in chromatin and the right of entry. DNA Repair (Amst) (2005) 1.23
Transcription-coupled repair in RNA polymerase I-transcribed genes of yeast. Proc Natl Acad Sci U S A (2002) 1.14
Rotational dynamics of DNA on the nucleosome surface markedly impact accessibility to a DNA repair enzyme. Proc Natl Acad Sci U S A (2010) 1.13
Dissecting transcription-coupled and global genomic repair in the chromatin of yeast GAL1-10 genes. J Biol Chem (2004) 1.11
Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A. Mol Cell Biol (2010) 1.11
Inhibition of nucleotide excision repair by high mobility group protein HMGA1. J Biol Chem (2005) 1.09
UV damage in DNA promotes nucleosome unwrapping. J Biol Chem (2010) 1.06
ChromatinDB: a database of genome-wide histone modification patterns for Saccharomyces cerevisiae. Bioinformatics (2007) 1.05
The structural location of DNA lesions in nucleosome core particles determines accessibility by base excision repair enzymes. J Biol Chem (2013) 0.99
Base excision repair in nucleosomes lacking histone tails. DNA Repair (Amst) (2005) 0.97
Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface. J Biol Chem (2005) 0.96
A cassette of N-terminal amino acids of histone H2B are required for efficient cell survival, DNA repair and Swi/Snf binding in UV irradiated yeast. Nucleic Acids Res (2009) 0.95
High-resolution characterization of CPD hotspot formation in human fibroblasts. Nucleic Acids Res (2013) 0.94
Simultaneous mutation of methylated lysine residues in histone H3 causes enhanced gene silencing, cell cycle defects, and cell lethality in Saccharomyces cerevisiae. Mol Cell Biol (2007) 0.92
A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast. Nucleic Acids Res (2008) 0.92
Yeast deubiquitinase Ubp3 interacts with the 26 S proteasome to facilitate Rad4 degradation. J Biol Chem (2010) 0.92
Regulation of gene transcription by the histone H2A N-terminal domain. Mol Cell Biol (2007) 0.92
Osiris: an integrated promoter database for Oryza sativa L. Bioinformatics (2008) 0.92
Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae. Bioinformatics (2009) 0.92
The emerging roles of ATP-dependent chromatin remodeling enzymes in nucleotide excision repair. Int J Mol Sci (2012) 0.90
Altering the chromatin landscape for nucleotide excision repair. Mutat Res (2009) 0.89
Polycistronic coexpression and nondenaturing purification of histone octamers. Anal Biochem (2012) 0.88
Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin). J Biol Chem (2014) 0.85
Repair-independent chromatin assembly onto active ribosomal genes in yeast after UV irradiation. Mol Cell Biol (2005) 0.85
Novel functional residues in the core domain of histone H2B regulate yeast gene expression and silencing and affect the response to DNA damage. Mol Cell Biol (2010) 0.85
Rapid changes in transcription and chromatin structure of ribosomal genes in yeast during growth phase transitions. Exp Cell Res (2005) 0.85
High-mobility group A1 proteins inhibit expression of nucleotide excision repair factor xeroderma pigmentosum group A. Cancer Res (2007) 0.85
The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast. DNA Repair (Amst) (2007) 0.84
Genetic and genomewide analysis of simultaneous mutations in acetylated and methylated lysine residues in histone H3 in Saccharomyces cerevisiae. Genetics (2008) 0.84
Modulation of Rad26- and Rpb9-mediated DNA repair by different promoter elements. J Biol Chem (2006) 0.84
Binding of zinc finger protein transcription factor IIIA to its cognate DNA sequence with single UV photoproducts at specific sites and its effect on DNA repair. J Biol Chem (2003) 0.82
Analysis of DNA repair on nucleosome templates. Methods Enzymol (2004) 0.82
RiceRBP: A Resource for Experimentally Identified RNA Binding Proteins in Oryza sativa. Front Plant Sci (2012) 0.81
Proficient repair in chromatin remodeling defective ino80 mutants of Saccharomyces cerevisiae highlights replication defects as the main contributor to DNA damage sensitivity. DNA Repair (Amst) (2010) 0.81
Gene-specific nucleotide excision repair is impaired in human cells expressing elevated levels of high mobility group A1 nonhistone proteins. DNA Repair (Amst) (2007) 0.80
Proteomic analysis of cytoskeleton-associated RNA binding proteins in developing rice seed. J Proteome Res (2009) 0.79
RiceRBP: a database of experimentally identified RNA-binding proteins in Oryza sativa L. Plant Sci (2010) 0.79
Assays for chromatin remodeling during nucleotide excision repair in Saccharomyces cerevisiae. Methods (2009) 0.79
DNA repair in a protein-DNA complex: searching for the key to get in. Mutat Res (2005) 0.79
Preface. DNA Repair (Amst) (2005) 0.76
Rad26, the transcription-coupled repair factor in yeast, is required for removal of stalled RNA polymerase-II following UV irradiation. PLoS One (2013) 0.76
Base excision repair in a glucocorticoid response element: effect of glucocorticoid receptor binding. J Biol Chem (2010) 0.75