A transposon-based genetic screen in mice identifies genes altered in colorectal cancer.

PubWeight™: 4.16‹?› | Rank: Top 1%

🔗 View Article (PMC 2743559)

Published in Science on February 26, 2009

Authors

Timothy K Starr1, Raha Allaei, Kevin A T Silverstein, Rodney A Staggs, Aaron L Sarver, Tracy L Bergemann, Mihir Gupta, M Gerard O'Sullivan, Ilze Matise, Adam J Dupuy, Lara S Collier, Scott Powers, Ann L Oberg, Yan W Asmann, Stephen N Thibodeau, Lino Tessarollo, Neal G Copeland, Nancy A Jenkins, Robert T Cormier, David A Largaespada

Author Affiliations

1: Department of Genetics, Cell Biology and Development, Center for Genome Engineering, Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA. star0044@umn.edu

Articles citing this

(truncated to the top 100)

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature (2011) 13.30

Recurrent R-spondin fusions in colon cancer. Nature (2012) 5.10

Somatic mutations in p85alpha promote tumorigenesis through class IA PI3K activation. Cancer Cell (2009) 4.47

The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature (2012) 3.23

Making sense of cancer genomic data. Genes Dev (2011) 3.01

Clonal selection drives genetic divergence of metastatic medulloblastoma. Nature (2012) 2.96

A hyperactive piggyBac transposase for mammalian applications. Proc Natl Acad Sci U S A (2011) 2.68

Harnessing transposons for cancer gene discovery. Nat Rev Cancer (2010) 2.44

Repression of the miR-143/145 cluster by oncogenic Ras initiates a tumor-promoting feed-forward pathway. Genes Dev (2010) 2.37

Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states. BMC Cancer (2009) 2.32

PiggyBac transposon mutagenesis: a tool for cancer gene discovery in mice. Science (2010) 2.31

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma. Cell (2013) 2.28

A transposon and transposase system for human application. Mol Ther (2010) 2.28

High-throughput insertional mutagenesis screens in mice to identify oncogenic networks. Nat Rev Cancer (2009) 2.06

Insertional mutagenesis identifies multiple networks of cooperating genes driving intestinal tumorigenesis. Nat Genet (2011) 2.02

Secreted and transmembrane wnt inhibitors and activators. Cold Spring Harb Perspect Biol (2013) 2.01

A modified sleeping beauty transposon system that can be used to model a wide variety of human cancers in mice. Cancer Res (2009) 1.86

Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proc Natl Acad Sci U S A (2012) 1.82

Non-germline genetically engineered mouse models for translational cancer research. Nat Rev Cancer (2010) 1.80

Cell of origin strongly influences genetic selection in a mouse model of T-ALL. Blood (2011) 1.78

Forward genetic screen for malignant peripheral nerve sheath tumor formation identifies new genes and pathways driving tumorigenesis. Nat Genet (2013) 1.60

All y'all need to know 'bout retroelements in cancer. Semin Cancer Biol (2010) 1.52

Smad4-mediated TGF-beta signaling in tumorigenesis. Int J Biol Sci (2010) 1.47

Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture. Nat Med (2014) 1.47

Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. PLoS One (2012) 1.40

Melanoma: a model for testing new agents in combination therapies. J Transl Med (2010) 1.39

Subtypes of primary colorectal tumors correlate with response to targeted treatment in colorectal cell lines. BMC Med Genomics (2012) 1.39

Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors. PLoS One (2011) 1.38

Whole-body sleeping beauty mutagenesis can cause penetrant leukemia/lymphoma and rare high-grade glioma without associated embryonic lethality. Cancer Res (2009) 1.34

From cancer genomes to oncogenic drivers, tumour dependencies and therapeutic targets. Nat Rev Cancer (2012) 1.32

Global methylation in exposure biology and translational medical science. Environ Health Perspect (2011) 1.28

Cellular signaling and biological functions of R-spondins. Cell Signal (2011) 1.25

A method for stable transgenesis of radial glia lineage in rat neocortex by piggyBac mediated transposition. J Neurosci Methods (2012) 1.25

A Sleeping Beauty forward genetic screen identifies new genes and pathways driving osteosarcoma development and metastasis. Nat Genet (2015) 1.23

Genetically engineered mouse models in cancer research. Adv Cancer Res (2010) 1.18

Sleeping beauty transposition from nonintegrating lentivirus. Mol Ther (2009) 1.18

Novel dimensions of piRNAs in cancer. Cancer Lett (2013) 1.13

Our changing view of the genomic landscape of cancer. J Pathol (2010) 1.13

A Sleeping Beauty mutagenesis screen reveals a tumor suppressor role for Ncoa2/Src-2 in liver cancer. Proc Natl Acad Sci U S A (2012) 1.12

Pathology of rodent models of intestinal cancer: progress report and recommendations. Gastroenterology (2013) 1.12

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors. Genome Res (2011) 1.12

Analyzing the number of common integration sites of viral vectors--new methods and computer programs. PLoS One (2011) 1.10

The R-spondin family of proteins: emerging regulators of WNT signaling. Int J Biochem Cell Biol (2012) 1.09

A Sleeping Beauty transposon-mediated screen identifies murine susceptibility genes for adenomatous polyposis coli (Apc)-dependent intestinal tumorigenesis. Proc Natl Acad Sci U S A (2011) 1.09

Lentiviral vector-based insertional mutagenesis identifies genes associated with liver cancer. Nat Methods (2013) 1.08

The expanding universe of transposon technologies for gene and cell engineering. Mob DNA (2010) 1.08

Life in the fast lane: mammalian disease models in the genomics era. Cell (2012) 1.08

Colorectal cancer. Nat Rev Dis Prim (2015) 1.07

The mouse genetics toolkit: revealing function and mechanism. Genome Biol (2011) 1.05

Murine models of colorectal cancer. Mamm Genome (2009) 1.03

Regulation of CUG-binding protein 1 (CUGBP1) binding to target transcripts upon T cell activation. J Biol Chem (2011) 1.02

The role of KCNQ1 in mouse and human gastrointestinal cancers. Oncogene (2013) 1.02

Chromatin landscapes of retroviral and transposon integration profiles. PLoS Genet (2014) 1.02

Evaluating risks of insertional mutagenesis by DNA transposons in gene therapy. Transl Res (2013) 1.01

TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data. BMC Bioinformatics (2012) 1.01

Genetic reconstitution of tumorigenesis in primary intestinal cells. Proc Natl Acad Sci U S A (2013) 1.00

The Challenge of Cancer Genomics in Rare Nervous System Neoplasms: Malignant Peripheral Nerve Sheath Tumors as a Paradigm for Cross-Species Comparative Oncogenomics. Am J Pathol (2015) 0.99

Coordinate regulation of mRNA decay networks by GU-rich elements and CELF1. Curr Opin Genet Dev (2011) 0.99

Animal models of colorectal cancer. Cancer Metastasis Rev (2013) 0.99

Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage. Genes Dev (2014) 0.98

Sleeping beauty-mediated somatic mutagenesis implicates CSF1 in the formation of high-grade astrocytomas. Cancer Res (2010) 0.98

New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens. Nucleic Acids Res (2012) 0.98

The Candidate Cancer Gene Database: a database of cancer driver genes from forward genetic screens in mice. Nucleic Acids Res (2014) 0.97

Unexpectedly high copy number of random integration but low frequency of persistent expression of the Sleeping Beauty transposase after trans delivery in primary human T cells. Hum Gene Ther (2010) 0.97

L1 retrotransposons, cancer stem cells and oncogenesis. FEBS J (2013) 0.97

Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors. Proc Natl Acad Sci U S A (2012) 0.96

piggyBac transposon somatic mutagenesis with an activated reporter and tracker (PB-SMART) for genetic screens in mice. PLoS One (2011) 0.95

Sleeping Beauty mutagenesis in a mouse medulloblastoma model defines networks that discriminate between human molecular subgroups. Proc Natl Acad Sci U S A (2013) 0.95

PTEN and NF1 inactivation in Schwann cells produces a severe phenotype in the peripheral nervous system that promotes the development and malignant progression of peripheral nerve sheath tumors. Cancer Res (2012) 0.94

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis. BMC Genomics (2011) 0.94

Mobilizing diversity: transposable element insertions in genetic variation and disease. Mob DNA (2010) 0.93

RSPO-LGR4 functions via IQGAP1 to potentiate Wnt signaling. Proc Natl Acad Sci U S A (2014) 0.93

Interaction with both ZNRF3 and LGR4 is required for the signalling activity of R-spondin. EMBO Rep (2013) 0.93

Transposon-based screens for cancer gene discovery in mouse models. Semin Cancer Biol (2010) 0.93

Detection of genomic aberrations in molecularly defined Burkitt's lymphoma by array-based, high resolution, single nucleotide polymorphism analysis. Haematologica (2010) 0.93

Retroviral vectors: post entry events and genomic alterations. Viruses (2011) 0.92

Computational identification of insertional mutagenesis targets for cancer gene discovery. Nucleic Acids Res (2011) 0.92

A selective chemical probe for exploring the role of CDK8 and CDK19 in human disease. Nat Chem Biol (2015) 0.90

Oocyte-derived R-spondin2 promotes ovarian follicle development. FASEB J (2013) 0.89

Transgenic mice overexpressing neuregulin-1 model neurofibroma-malignant peripheral nerve sheath tumor progression and implicate specific chromosomal copy number variations in tumorigenesis. Am J Pathol (2013) 0.89

Mutated in colorectal cancer (MCC) is a novel oncogene in B lymphocytes. J Hematol Oncol (2014) 0.88

Sex bias occurrence of hepatocellular carcinoma in Poly7 molecular subclass is associated with EGFR. Hepatology (2012) 0.88

Cancer gene discovery: exploiting insertional mutagenesis. Mol Cancer Res (2013) 0.88

Remobilization of Tol2 transposons in Xenopus tropicalis. BMC Dev Biol (2010) 0.87

Assessing the mechanism and therapeutic potential of modulators of the human Mediator complex-associated protein kinases. Elife (2016) 0.87

Aberrant RSPO3-LGR4 signaling in Keap1-deficient lung adenocarcinomas promotes tumor aggressiveness. Oncogene (2014) 0.87

Protein tyrosine phosphatase kappa (PTPRK) is a negative regulator of adhesion and invasion of breast cancer cells, and associates with poor prognosis of breast cancer. J Cancer Res Clin Oncol (2013) 0.86

Enhancing diagnosis, prognosis, and therapeutic outcome prediction of gliomas using genomics. OMICS (2012) 0.86

EVI1 oncoprotein interacts with a large and complex network of proteins and integrates signals through protein phosphorylation. Proc Natl Acad Sci U S A (2013) 0.86

Sleeping Beauty transposon screen identifies signaling modules that cooperate with STAT5 activation to induce B-cell acute lymphoblastic leukemia. Oncogene (2015) 0.86

Identification of a neuronal transcription factor network involved in medulloblastoma development. Acta Neuropathol Commun (2013) 0.85

Transposon Mutagenesis Screen Identifies Potential Lung Cancer Drivers and CUL3 as a Tumor Suppressor. Mol Cancer Res (2015) 0.85

Somatic mutagenesis with a Sleeping Beauty transposon system leads to solid tumor formation in zebrafish. PLoS One (2011) 0.85

Genetic screens using the piggyBac transposon. Methods (2010) 0.84

New approaches for modelling sporadic genetic disease in the mouse. Dis Model Mech (2009) 0.84

Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model. Proc Natl Acad Sci U S A (2013) 0.83

Genetic signature of histiocytic sarcoma revealed by a sleeping beauty transposon genetic screen in mice. PLoS One (2014) 0.83

LGR4 and Its Role in Intestinal Protection and Energy Metabolism. Front Endocrinol (Lausanne) (2015) 0.83

CFTR is a tumor suppressor gene in murine and human intestinal cancer. Oncogene (2016) 0.83

RNA sequencing of Sleeping Beauty transposon-induced tumors detects transposon-RNA fusions in forward genetic cancer screens. Genome Res (2015) 0.82

Articles cited by this

MicroRNA expression profiles classify human cancers. Nature (2005) 69.12

The genomic landscapes of human breast and colorectal cancers. Science (2007) 38.12

A census of human cancer genes. Nat Rev Cancer (2004) 36.20

ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia (2004) 17.08

Disruption of overlapping transcripts in the ROSA beta geo 26 gene trap strain leads to widespread expression of beta-galactosidase in mouse embryos and hematopoietic cells. Proc Natl Acad Sci U S A (1997) 8.35

Tissue-specific and inducible Cre-mediated recombination in the gut epithelium. Genesis (2004) 6.83

Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse. Nature (2005) 6.40

Identification by Real-time PCR of 13 mature microRNAs differentially expressed in colorectal cancer and non-tumoral tissues. Mol Cancer (2006) 6.39

CDK8 is a colorectal cancer oncogene that regulates beta-catenin activity. Nature (2008) 6.24

Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system. Nature (2005) 6.20

Identification of a gene located at chromosome 5q21 that is mutated in colorectal cancers. Science (1991) 6.15

Inactivation of hCDC4 can cause chromosomal instability. Nature (2004) 5.71

COSMIC 2005. Br J Cancer (2006) 5.07

Colorectal cancer and genetic alterations in the Wnt pathway. Oncogene (2006) 4.14

High-resolution genome-wide mapping of transposon integration in mammals. Mol Cell Biol (2005) 3.10

R-Spondin proteins: a novel link to beta-catenin activation. Cell Cycle (2006) 2.56

The onset and extent of genomic instability in sporadic colorectal tumor progression. Proc Natl Acad Sci U S A (1999) 2.41

ASPP: a new family of oncogenes and tumour suppressor genes. Br J Cancer (2007) 1.94

SND1, a component of RNA-induced silencing complex, is up-regulated in human colon cancers and implicated in early stage colon carcinogenesis. Cancer Res (2007) 1.62

Evidence that in xeroderma pigmentosum variant cells, which lack DNA polymerase eta, DNA polymerase iota causes the very high frequency and unique spectrum of UV-induced mutations. Cancer Res (2007) 1.56

High-resolution mapping of DNA methylation in human genome using oligonucleotide tiling array. Hum Genet (2006) 1.31

Promoter methylation of the mutated in colorectal cancer gene is a frequent early event in colorectal cancer. Oncogene (2007) 1.28

Genome-wide expression patterns of invasion front, inner tumor mass and surrounding normal epithelium of colorectal tumors. Mol Cancer (2007) 1.06

Articles by these authors

A microRNA polycistron as a potential human oncogene. Nature (2005) 40.21

Pluripotency of mesenchymal stem cells derived from adult marrow. Nature (2002) 19.57

CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet (2006) 13.63

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature (2011) 13.30

A highly efficient recombineering-based method for generating conditional knockout mutations. Genome Res (2003) 12.94

Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approach. Cell (2006) 12.72

Tumor microsatellite-instability status as a predictor of benefit from fluorouracil-based adjuvant chemotherapy for colon cancer. N Engl J Med (2003) 12.17

Simple and highly efficient BAC recombineering using galK selection. Nucleic Acids Res (2005) 11.23

Genomic instability in mice lacking histone H2AX. Science (2002) 10.23

Correction of X-linked chronic granulomatous disease by gene therapy, augmented by insertional activation of MDS1-EVI1, PRDM16 or SETBP1. Nat Med (2006) 9.68

Onset and progression in inherited ALS determined by motor neurons and microglia. Science (2006) 9.42

Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature (2012) 8.31

Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation. Genome Res (2003) 7.86

Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. Proc Natl Acad Sci U S A (2012) 7.14

Defective mismatch repair as a predictive marker for lack of efficacy of fluorouracil-based adjuvant therapy in colon cancer. J Clin Oncol (2010) 6.87

c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells. Cell (2012) 6.49

Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse. Nature (2005) 6.40

Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system. Nature (2005) 6.20

Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer. Nat Genet (2008) 6.10

Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. Nat Genet (2009) 6.04

Mutant presenilins specifically elevate the levels of the 42 residue beta-amyloid peptide in vivo: evidence for augmentation of a 42-specific gamma secretase. Hum Mol Genet (2003) 5.92

Immunohistochemistry versus microsatellite instability testing in phenotyping colorectal tumors. J Clin Oncol (2002) 5.91

Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Nat Genet (2013) 5.58

Androgen receptor splice variants mediate enzalutamide resistance in castration-resistant prostate cancer cell lines. Cancer Res (2012) 5.50

An oncogenomics-based in vivo RNAi screen identifies tumor suppressors in liver cancer. Cell (2008) 5.47

Recurrent R-spondin fusions in colon cancer. Nature (2012) 5.10

The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature (2011) 4.94

Timing of antiretroviral therapy after diagnosis of cryptococcal meningitis. N Engl J Med (2014) 4.91

Identification of Vangl2 and Scrb1 as planar polarity genes in mammals. Nature (2003) 4.56

Adenoma-linked barrier defects and microbial products drive IL-23/IL-17-mediated tumour growth. Nature (2012) 4.41

RTCGD: retroviral tagged cancer gene database. Nucleic Acids Res (2004) 4.41

New genes involved in cancer identified by retroviral tagging. Nat Genet (2002) 4.14

DNA mismatch repair status and colon cancer recurrence and survival in clinical trials of 5-fluorouracil-based adjuvant therapy. J Natl Cancer Inst (2011) 4.08

Identification of an organelle receptor for myosin-Va. Nat Cell Biol (2002) 4.06

Lower cancer incidence in Amsterdam-I criteria families without mismatch repair deficiency: familial colorectal cancer type X. JAMA (2005) 3.99

Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proc Natl Acad Sci U S A (2003) 3.93

Cdk2 knockout mice are viable. Curr Biol (2003) 3.92

Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer. Proc Natl Acad Sci U S A (2007) 3.84

Melanocytes and the microphthalmia transcription factor network. Annu Rev Genet (2004) 3.78

EGAPP supplementary evidence review: DNA testing strategies aimed at reducing morbidity and mortality from Lynch syndrome. Genet Med (2009) 3.57

The E3 ligase Itch negatively regulates inflammatory signaling pathways by controlling the function of the ubiquitin-editing enzyme A20. Nat Immunol (2008) 3.55

Effect of oxaliplatin, fluorouracil, and leucovorin with or without cetuximab on survival among patients with resected stage III colon cancer: a randomized trial. JAMA (2012) 3.52

Bcl11a is essential for normal lymphoid development. Nat Immunol (2003) 3.48

A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma. Nat Biotechnol (2009) 3.44

BRAF mutations in colon cancer are not likely attributable to defective DNA mismatch repair. Cancer Res (2003) 3.39

The clinical phenotype of Lynch syndrome due to germ-line PMS2 mutations. Gastroenterology (2008) 3.35

Gene transfer into genomes of human cells by the sleeping beauty transposon system. Mol Ther (2003) 3.34

Human alpha-synuclein-harboring familial Parkinson's disease-linked Ala-53 --> Thr mutation causes neurodegenerative disease with alpha-synuclein aggregation in transgenic mice. Proc Natl Acad Sci U S A (2002) 3.33

The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature (2012) 3.23

Donors with group B KIR haplotypes improve relapse-free survival after unrelated hematopoietic cell transplantation for acute myelogenous leukemia. Blood (2008) 3.18

Effects of sex and age on bone microstructure at the ultradistal radius: a population-based noninvasive in vivo assessment. J Bone Miner Res (2005) 3.11

Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study. Nat Genet (2011) 3.07

Harnessing a high cargo-capacity transposon for genetic applications in vertebrates. PLoS Genet (2006) 2.99

Clonal selection drives genetic divergence of metastatic medulloblastoma. Nature (2012) 2.96

Clinical features and serum biomarkers in HIV immune reconstitution inflammatory syndrome after cryptococcal meningitis: a prospective cohort study. PLoS Med (2010) 2.94

Insertional mutagenesis identifies genes that promote the immortalization of primary bone marrow progenitor cells. Blood (2005) 2.93

Nonparametric tests of association of multiple genes with human disease. Am J Hum Genet (2005) 2.87

A cluster of cooperating tumor-suppressor gene candidates in chromosomal deletions. Proc Natl Acad Sci U S A (2012) 2.85

Parkinson's disease alpha-synuclein transgenic mice develop neuronal mitochondrial degeneration and cell death. J Neurosci (2006) 2.85

Incidence of childhood distal forearm fractures over 30 years: a population-based study. JAMA (2003) 2.81

Hermansky-Pudlak syndrome type 7 (HPS-7) results from mutant dysbindin, a member of the biogenesis of lysosome-related organelles complex 1 (BLOC-1). Nat Genet (2003) 2.78