Published in J Biol Chem on March 10, 2009
SHAPE-directed RNA secondary structure prediction. Methods (2010) 2.40
Advances in RNA structure analysis by chemical probing. Curr Opin Struct Biol (2010) 2.24
3' cap-independent translation enhancers of plant viruses. Annu Rev Microbiol (2013) 1.23
Tombusvirus recruitment of host translational machinery via the 3' UTR. RNA (2010) 1.06
The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure (2011) 1.00
Structural plasticity of Barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs. Virology (2010) 0.99
A ribosome-binding, 3' translational enhancer has a T-shaped structure and engages in a long-distance RNA-RNA interaction. J Virol (2012) 0.95
Translation initiation mediated by RNA looping. Proc Natl Acad Sci U S A (2015) 0.90
Long-distance kissing loop interactions between a 3' proximal Y-shaped structure and apical loops of 5' hairpins enhance translation of Saguaro cactus virus. Virology (2011) 0.89
Poly(A)-binding protein facilitates translation of an uncapped/nonpolyadenylated viral RNA by binding to the 3' untranslated region. J Virol (2012) 0.86
Tombusvirus Y-shaped translational enhancer forms a complex with eIF4F and can be functionally replaced by heterologous translational enhancers. J Virol (2012) 0.86
Regulation of Translation Initiation under Biotic and Abiotic Stresses. Int J Mol Sci (2013) 0.83
The kissing-loop T-shaped structure translational enhancer of Pea enation mosaic virus can bind simultaneously to ribosomes and a 5' proximal hairpin. J Virol (2013) 0.82
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. Nucleic Acids Res (2016) 0.82
Evidence for a novel gene associated with human influenza A viruses. Virol J (2009) 0.81
The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers. J Virol (2014) 0.81
Multiple Cis-acting elements modulate programmed -1 ribosomal frameshifting in Pea enation mosaic virus. Nucleic Acids Res (2015) 0.80
Untranslated regions of diverse plant viral RNAs vary greatly in translation enhancement efficiency. BMC Biotechnol (2012) 0.80
Cis- and trans-regulation of luteovirus gene expression by the 3' end of the viral genome. Virus Res (2015) 0.80
Dissecting virus-plant interactions through proteomics approaches. Curr Proteomics (2010) 0.79
Progress and outlook in structural biology of large viral RNAs. Virus Res (2014) 0.79
A Viral mRNA Motif at the 3'-Untranslated Region that Confers Translatability in a Cell-Specific Manner. Implications for Virus Evolution. Sci Rep (2016) 0.77
Position of the kissing-loop interaction associated with PTE-type 3'CITEs can affect enhancement of cap-independent translation. Virology (2014) 0.76
The mammalian orthoreovirus bicistronic M3 mRNA initiates translation using a 5' end-dependent, scanning mechanism that does not require interaction of 5'-3' untranslated regions. Virus Res (2014) 0.75
Functional analysis of Kaposi's sarcoma-associated herpesvirus vFLIP expression reveals a new mode of IRES-mediated translation. RNA (2014) 0.75
The Triticum Mosaic Virus 5' Leader Binds to Both eIF4G and eIFiso4G for Translation. PLoS One (2017) 0.75
Linking Α to Ω: diverse and dynamic RNA-based mechanisms to regulate gene expression by 5'-to-3' communication. F1000Res (2016) 0.75
Non-canonical Translation in Plant RNA Viruses. Front Plant Sci (2017) 0.75
A Sequence-Independent, Unstructured Internal Ribosome Entry Site Is Responsible for Internal Expression of the Coat Protein of Turnip Crinkle Virus. J Virol (2017) 0.75
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem (1976) 903.81
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annu Rev Biochem (1999) 14.59
Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem (1991) 11.92
Regulation of cap-dependent translation by eIF4E inhibitory proteins. Nature (2005) 6.69
Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell (1998) 6.47
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc (2005) 6.46
Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc (2006) 6.14
Gene-specific regulation by general translation factors. Cell (2002) 6.05
Molecular mechanisms of translation initiation in eukaryotes. Proc Natl Acad Sci U S A (2001) 5.80
The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev (2002) 4.96
Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell (1997) 4.75
A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions. Proc Natl Acad Sci U S A (1993) 4.00
Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E. Cell (2003) 3.46
Eukaryotic translation initiation factors and regulators. Curr Opin Struct Biol (2003) 2.63
Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. J Mol Biol (2002) 2.53
The mRNA cap-binding protein eIF4E in post-transcriptional gene expression. Nat Struct Mol Biol (2004) 2.37
Translation factors promote the formation of two states of the closed-loop mRNP. Nature (2008) 2.31
Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol Cell (2001) 1.97
Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr Biol (2002) 1.95
Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci (2005) 1.80
A viral sequence in the 3'-untranslated region mimics a 5' cap in facilitating translation of uncapped mRNA. EMBO J (1997) 1.80
The plant translational apparatus. Plant Mol Biol (1996) 1.72
Isolation and sequence of the cDNAs encoding the subunits of the isozyme form of wheat protein synthesis initiation factor 4F. J Biol Chem (1992) 1.70
A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc Natl Acad Sci U S A (2002) 1.65
Divergent IRES elements in invertebrates. Virus Res (2005) 1.58
Cap-independent translation of plant viral RNAs. Virus Res (2005) 1.56
Long-distance RNA-RNA interactions in plant virus gene expression and replication. Annu Rev Phytopathol (2006) 1.53
Complex formation between potyvirus VPg and translation eukaryotic initiation factor 4E correlates with virus infectivity. J Virol (2000) 1.50
5'-3' RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mrna: a potential common mechanism for tombusviridae. J Biol Chem (2004) 1.47
Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region. RNA (2000) 1.42
The 5'-leader of tobacco mosaic virus promotes translation through enhanced recruitment of eIF4F. Nucleic Acids Res (2002) 1.40
The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs. Biochem Soc Trans (2007) 1.40
The 5' and 3' untranslated regions of satellite tobacco necrosis virus RNA affect translational efficiency and dependence on a 5' cap structure. J Biol Chem (1993) 1.40
An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon. Plant J (2006) 1.39
eIF4G functionally differs from eIFiso4G in promoting internal initiation, cap-independent translation, and translation of structured mRNAs. J Biol Chem (2001) 1.38
Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations. J Mol Biol (2003) 1.37
Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J (2008) 1.34
Cap-independent translational enhancement of turnip crinkle virus genomic and subgenomic RNAs. J Virol (2000) 1.34
The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA (2008) 1.29
A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA. J Biol Chem (1995) 1.29
Strain-specific interaction of the tobacco etch virus NIa protein with the translation initiation factor eIF4E in the yeast two-hybrid system. Virology (2000) 1.24
Analysis of the mRNA cap-binding ability of human eukaryotic initiation factor-4E by use of recombinant wild-type and mutant forms. Eur J Biochem (1996) 1.23
The 3' cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA (2007) 1.22
Analysis of a 3'-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA termini. RNA (2006) 1.22
The 3' untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element. J Virol (2004) 1.20
Cap-independent translational enhancement by the 3' untranslated region of red clover necrotic mosaic virus RNA1. J Virol (2003) 1.20
A novel interaction of Cap-binding protein complexes eukaryotic initiation factor (eIF) 4F and eIF(iso)4F with a region in the 3'-untranslated region of satellite tobacco necrosis virus. J Biol Chem (2004) 1.19
Plant translation initiation factors: it is not easy to be green. Biochem Soc Trans (2004) 1.17
Features of the autonomous function of the translational enhancer domain of satellite tobacco necrosis virus. RNA (1998) 1.16
Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element. RNA (2006) 1.10
The structure of eukaryotic translation initiation factor-4E from wheat reveals a novel disulfide bond. Plant Physiol (2007) 1.10
Potyvirus genome-linked protein, VPg, directly affects wheat germ in vitro translation: interactions with translation initiation factors eIF4F and eIFiso4F. J Biol Chem (2007) 1.05
A translational enhancer element on the 3'-proximal end of the Panicum mosaic virus genome. FEBS Lett (2006) 1.04
Secondary structure in the 5'-leader or 3'-untranslated region reduces protein yield but does not affect the functional interaction between the 5'-cap and the poly(A) tail. FEBS Lett (1999) 1.03
Mechanism of plant eIF4E-mediated resistance against a Carmovirus (Tombusviridae): cap-independent translation of a viral RNA controlled in cis by an (a)virulence determinant. Plant J (2008) 1.03
Molecular biology of umbraviruses: phantom warriors. J Gen Virol (2003) 1.02
Expression and purification of recombinant wheat translation initiation factors eIF1, eIF1A, eIF4A, eIF4B, eIF4F, eIF(iso)4F, and eIF5. Methods Enzymol (2007) 1.02
The chimeric nature of the genome of pea enation mosaic virus: the independent replication of RNA 2. J Gen Virol (1993) 0.99
High affinity RNA for mammalian initiation factor 4E interferes with mRNA-cap binding and inhibits translation. RNA (2005) 0.98
Cap-independent translation of tobacco etch virus is conferred by an RNA pseudoknot in the 5'-leader. J Biol Chem (2005) 0.97
Infectious cDNA transcripts of Maize necrotic streak virus: infectivity and translational characteristics. Virology (2006) 0.94
Structural changes of eIF4E upon binding to the mRNA 5' monomethylguanosine and trimethylguanosine Cap. Biochemistry (2008) 0.94
Fluorescence study of the binding of m7GpppG and rabbit globin mRNA to protein synthesis initiation factors 4A, 4E, and 4F. Biochemistry (1990) 0.93
The RNA2 5' leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism. J Gen Virol (2007) 0.92
Tobacco etch virus mRNA preferentially binds wheat germ eukaryotic initiation factor (eIF) 4G rather than eIFiso4G. J Biol Chem (2006) 0.90
Mutational analysis of plant cap-binding protein eIF4E reveals key amino acids involved in biochemical functions and potyvirus infection. J Virol (2008) 0.89
Expression and suppression of circulative aphid transmission in pea enation mosaic virus. J Gen Virol (1997) 0.82
An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci U S A (2008) 2.54
Translational control in positive strand RNA plant viruses. Virology (2006) 1.75
A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc Natl Acad Sci U S A (2002) 1.65
Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell (2006) 1.62
Dicistroviruses. Annu Rev Entomol (2010) 1.61
Cap-independent translation of plant viral RNAs. Virus Res (2005) 1.56
3' cap-independent translation enhancers of plant viruses. Annu Rev Microbiol (2013) 1.23
The 3' cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA (2007) 1.22
The 3' untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element. J Virol (2004) 1.20
The 3prime prime or minute-terminal structure required for replication of Barley yellow dwarf virus RNA contains an embedded 3prime prime or minute end. Virology (2002) 1.13
Interaction of the trans-frame potyvirus protein P3N-PIPO with host protein PCaP1 facilitates potyvirus movement. PLoS Pathog (2012) 1.12
Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element. RNA (2006) 1.10
Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking. New Phytol (2013) 1.03
The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure (2011) 1.00
Structural plasticity of Barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs. Virology (2010) 0.99
A peptide that binds the pea aphid gut impedes entry of Pea enation mosaic virus into the aphid hemocoel. Virology (2010) 0.92
trans regulation of cap-independent translation by a viral subgenomic RNA. J Virol (2006) 0.89
Cation-dependent folding of 3' cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G. Nucleic Acids Res (2013) 0.89
Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2. Virology (2004) 0.88
The readthrough domain of pea enation mosaic virus coat protein is not essential for virus stability in the hemolymph of the pea aphid. Arch Virol (2009) 0.83
The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses. Front Microbiol (2013) 0.83
A glassy-winged sharpshooter cell line supports replication of Rhopalosiphum padi virus (Dicistroviridae). J Invertebr Pathol (2006) 0.83
Infectious genomic RNA of Rhopalosiphum padi virus transcribed in vitro from a full-length cDNA clone. Virology (2008) 0.82
Baculovirus-expressed virus-like particles of Pea enation mosaic virus vary in size and encapsidate baculovirus mRNAs. Virus Res (2008) 0.81
Complete nucleotide sequences of the small and medium RNA genome segments of Kairi virus (family Bunyaviridae). Arch Virol (2009) 0.80
Untranslated regions of diverse plant viral RNAs vary greatly in translation enhancement efficiency. BMC Biotechnol (2012) 0.80
Rose spring dwarf-associated virus has RNA structural and gene-expression features like those of Barley yellow dwarf virus. Virology (2008) 0.80
Cis and trans requirements for rolling circle replication of a satellite RNA. J Virol (2004) 0.80
Preparation and electroporation of oat protoplasts from cell suspension culture. Curr Protoc Microbiol (2007) 0.77
Crystallization and preliminary X-ray diffraction analysis of the barley yellow dwarf virus cap-independent translation element. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.76
A baculovirus-expressed dicistrovirus that is infectious to aphids. J Virol (2007) 0.76
In vivo analyses of viral RNA translation. Methods Mol Biol (2008) 0.76
Rapid full-length cloning of nonpolyadenylated RNA virus genomes. Curr Protoc Microbiol (2007) 0.76
A baculovirus-expressed dicistrovirus that is infectious to aphids. J Virol (2014) 0.76
In vitro analysis of translation enhancers. Methods Mol Biol (2008) 0.75
Pollen Contaminated With Field-Relevant Levels of Cyhalothrin Affects Honey Bee Survival, Nutritional Physiology, and Pollen Consumption Behavior. J Econ Entomol (2016) 0.75