Published in Nat Rev Genet on July 01, 2009
Origins of specificity in protein-DNA recognition. Annu Rev Biochem (2010) 4.43
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements. Genome Res (2012) 3.61
RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science (2014) 3.48
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature (2012) 2.85
HITS-CLIP: panoramic views of protein-RNA regulation in living cells. Wiley Interdiscip Rev RNA (2010) 2.59
High nucleosome occupancy is encoded at human regulatory sequences. PLoS One (2010) 2.43
De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol (2010) 2.05
Comparative studies of gene expression and the evolution of gene regulation. Nat Rev Genet (2012) 1.79
Nucleosome sequence preferences influence in vivo nucleosome organization. Nat Struct Mol Biol (2010) 1.72
Synthetic biology: understanding biological design from synthetic circuits. Nat Rev Genet (2009) 1.70
What does physics have to do with cancer? Nat Rev Cancer (2011) 1.59
Eukaryotic transcriptional dynamics: from single molecules to cell populations. Nat Rev Genet (2013) 1.57
Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes. Nat Commun (2011) 1.46
The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli. PLoS One (2014) 1.44
Regulation of transcription in plants: mechanisms controlling developmental switches. Nat Rev Genet (2010) 1.38
Effect of promoter architecture on the cell-to-cell variability in gene expression. PLoS Comput Biol (2011) 1.37
Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types. Genome Res (2013) 1.33
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development. Genome Biol (2014) 1.24
Adaptive evolution: evaluating empirical support for theoretical predictions. Nat Rev Genet (2012) 1.22
Impact of chromatin structure on sequence variability in the human genome. Nat Struct Mol Biol (2011) 1.21
Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2011) 1.21
Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc Natl Acad Sci U S A (2010) 1.15
Genome recognition by MYC. Cold Spring Harb Perspect Med (2014) 1.10
Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels. Mol Syst Biol (2012) 1.10
P-value-based regulatory motif discovery using positional weight matrices. Genome Res (2012) 1.09
Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities. Nucleic Acids Res (2009) 1.09
Unraveling determinants of transcription factor binding outside the core binding site. Genome Res (2015) 1.06
Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nat Methods (2013) 1.06
Mapping yeast transcriptional networks. Genetics (2013) 1.06
Operator sequence alters gene expression independently of transcription factor occupancy in bacteria. Cell Rep (2012) 1.05
Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription. Genes Dev (2014) 1.05
A framework for modelling gene regulation which accommodates non-equilibrium mechanisms. BMC Biol (2014) 1.03
Direct observation of frequency modulated transcription in single cells using light activation. Elife (2013) 1.03
Experimental strategies for studying transcription factor-DNA binding specificities. Brief Funct Genomics (2010) 1.01
Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions. Genes Dev (2010) 1.01
Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast. Biophys J (2011) 0.99
Post-translational modifications of histones that influence nucleosome dynamics. Chem Rev (2014) 0.99
Cellular resolution models for even skipped regulation in the entire Drosophila embryo. Elife (2013) 0.98
The embryo as a laboratory: quantifying transcription in Drosophila. Trends Genet (2014) 0.97
What do expression dynamics tell us about the mechanism of transcription? Curr Opin Genet Dev (2011) 0.97
The DNA sequence-dependence of nucleosome positioning in vivo and in vitro. J Biomol Struct Dyn (2010) 0.96
Stem cell differentiation as a many-body problem. Proc Natl Acad Sci U S A (2014) 0.94
Mapping the fine structure of a eukaryotic promoter input-output function. Nat Genet (2013) 0.94
Nucleosome mapping across the CFTR locus identifies novel regulatory factors. Nucleic Acids Res (2013) 0.92
Combining protein and mRNA quantification to decipher transcriptional regulation. Nat Methods (2015) 0.91
Computational models for large-scale simulations of facilitated diffusion. Mol Biosyst (2012) 0.90
Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast. BMC Genomics (2011) 0.89
Divergent DNA-binding specificities of a group of ETHYLENE RESPONSE FACTOR transcription factors involved in plant defense. Plant Physiol (2013) 0.89
A lattice model for transcription factor access to nucleosomal DNA. Biophys J (2010) 0.88
Functional sub-division of the Drosophila genome via chromatin looping: the emerging importance of CP190. Nucleus (2013) 0.88
Structural and mechanistic basis of zinc regulation across the E. coli Zur regulon. PLoS Biol (2014) 0.88
Transcription factor and chromatin features predict genes associated with eQTLs. Nucleic Acids Res (2012) 0.87
Evolution of gene regulatory networks by fluctuating selection and intrinsic constraints. PLoS Comput Biol (2010) 0.86
Time-scale separation--Michaelis and Menten's old idea, still bearing fruit. FEBS J (2013) 0.86
Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression. Integr Biol (Camb) (2012) 0.86
Nucleosome occupancy reveals regulatory elements of the CFTR promoter. Nucleic Acids Res (2011) 0.85
Hybrid incompatibility arises in a sequence-based bioenergetic model of transcription factor binding. Genetics (2014) 0.85
Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families. Nucleic Acids Res (2009) 0.85
Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest. Nucleic Acids Res (2013) 0.84
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction. Genome Res (2014) 0.84
Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions. PLoS One (2012) 0.83
Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression. Comput Struct Biotechnol J (2014) 0.83
A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation. BMC Plant Biol (2011) 0.83
TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning. Genome Biol (2014) 0.83
Cancer genomics identifies disrupted epigenetic genes. Hum Genet (2013) 0.83
Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions. PLoS Comput Biol (2013) 0.82
Towards an evolutionary model of transcription networks. PLoS Comput Biol (2011) 0.82
Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. Elife (2017) 0.82
Analysis of primary structure of chromatin with next-generation sequencing. Epigenomics (2010) 0.82
Temporal hierarchy of gene expression mediated by transcription factor binding affinity and activation dynamics. MBio (2015) 0.82
Function does not follow form in gene regulatory circuits. Sci Rep (2015) 0.81
Transcription factor co-localization patterns affect human cell type-specific gene expression. BMC Genomics (2012) 0.81
The prolactin gene: a paradigm of tissue-specific gene regulation with complex temporal transcription dynamics. J Neuroendocrinol (2012) 0.81
A locally convoluted cluster model for nucleosome positioning signals in chemical map. J Am Stat Assoc (2014) 0.80
Modeling DNA-bending in the nucleosome: role of AA periodicity. J Phys Chem B (2011) 0.80
Control of gene expression by modulated self-assembly. Nucleic Acids Res (2011) 0.80
Systems biophysics of gene expression. Biophys J (2013) 0.80
Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescales. Genome Biol Evol (2012) 0.80
Isochores and the regulation of gene expression in the human genome. Genome Biol Evol (2011) 0.80
Increased subtlety of transcription factor binding increases complexity of genome regulation. Proc Natl Acad Sci U S A (2014) 0.80
Mapping mouse hemangioblast maturation from headfold stages. Dev Biol (2012) 0.80
DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks. Biophys J (2015) 0.79
Differential regulation drives plasticity in sex determination gene networks. BMC Evol Biol (2010) 0.79
CpG domains downstream of TSSs promote high levels of gene expression. Nucleic Acids Res (2014) 0.79
ChIPs and regulatory bits. Nat Biotechnol (2010) 0.79
Incorporating chromatin accessibility data into sequence-to-expression modeling. Biophys J (2015) 0.79
Information Integration and Energy Expenditure in Gene Regulation. Cell (2016) 0.79
Comparison of the theoretical and real-world evolutionary potential of a genetic circuit. Phys Biol (2014) 0.78
The influence of transcription factor competition on the relationship between occupancy and affinity. PLoS One (2013) 0.78
Genome-wide measurement of protein-DNA binding dynamics using competition ChIP. Nat Protoc (2013) 0.78
Dissection of androgen receptor-promoter interactions: steroid receptors partition their interaction energetics in parallel with their phylogenetic divergence. J Mol Biol (2013) 0.78
Binding site number variation and high-affinity binding consensus of Myb-SANT-like transcription factor Adf-1 in Drosophilidae. Nucleic Acids Res (2010) 0.78
Nucleosome regulatory dynamics in response to TGFβ. Nucleic Acids Res (2014) 0.78
Steroid receptor-DNA interactions: toward a quantitative connection between energetics and transcriptional regulation. Nucleic Acids Res (2013) 0.76
Understanding nucleosome dynamics and their links to gene expression and DNA replication. Nat Rev Mol Cell Biol (2017) 0.76
Tunicates: exploring the sea shores and roaming the open ocean. A tribute to Thomas Huxley. Open Biol (2015) 0.75
Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. PLoS One (2012) 0.75
Computational challenges in modeling gene regulatory events. Transcription (2016) 0.75
Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities. Nucleic Acids Res (2015) 0.75
Prediction of fine-tuned promoter activity from DNA sequence. F1000Res (2016) 0.75
Genome-wide mapping of in vivo protein-DNA interactions. Science (2007) 64.92
Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol (1976) 33.01
Transcriptional regulatory code of a eukaryotic genome. Nature (2004) 27.21
Dynamic regulation of nucleosome positioning in the human genome. Cell (2008) 15.60
A genomic code for nucleosome positioning. Nature (2006) 15.38
Genome-scale identification of nucleosome positions in S. cerevisiae. Science (2005) 15.04
Noise in eukaryotic gene expression. Nature (2003) 13.01
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature (2006) 12.92
Control of stochasticity in eukaryotic gene expression. Science (2004) 12.85
A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell (1999) 11.90
Cooperation between complexes that regulate chromatin structure and transcription. Cell (2002) 10.38
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet (2007) 9.56
Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A (1981) 9.45
Sequence periodicities in chicken nucleosome core DNA. J Mol Biol (1986) 8.84
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature (2007) 8.68
Nucleosome organization in the Drosophila genome. Nature (2008) 8.65
Controlling the double helix. Nature (2003) 8.61
Noise in protein expression scales with natural protein abundance. Nat Genet (2006) 8.03
The structure of DNA in the nucleosome core. Nature (2003) 7.94
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell (2008) 7.93
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res (2008) 7.89
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res (2008) 7.77
Dynamics of replication-independent histone turnover in budding yeast. Science (2007) 6.41
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat Genet (2004) 6.33
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol (2008) 6.30
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell (2005) 6.17
Chromatin remodelling at promoters suppresses antisense transcription. Nature (2007) 6.11
On schemes of combinatorial transcription logic. Proc Natl Acad Sci U S A (2003) 6.02
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol (2008) 5.88
Nucleosome positions predicted through comparative genomics. Nat Genet (2006) 5.81
The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation. J Mol Biol (1985) 5.79
P-element-mediated enhancer detection: a versatile method to study development in Drosophila. Genes Dev (1989) 5.76
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol (2008) 5.71
Transcriptional regulation by the numbers: models. Curr Opin Genet Dev (2005) 5.20
High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res (2009) 5.11
Predicting expression patterns from regulatory sequence in Drosophila segmentation. Nature (2008) 5.08
ATP-dependent chromatin-remodeling complexes. Mol Cell Biol (2000) 5.07
A systems approach to measuring the binding energy landscapes of transcription factors. Science (2007) 5.06
Nucleosome positioning signals in genomic DNA. Genome Res (2007) 4.99
Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism. Nucleic Acids Res (1988) 4.92
Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet (2008) 4.69
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Species-specific transcription in mice carrying human chromosome 21. Science (2008) 4.03
Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Res (2006) 3.89
Quantifying DNA-protein interactions by double-stranded DNA arrays. Nat Biotechnol (1999) 3.87
The nucleosome: from genomic organization to genomic regulation. Cell (2004) 3.83
Global position and recruitment of HATs and HDACs in the yeast genome. Mol Cell (2004) 3.74
Cooperative DNA binding of the yeast transcriptional activator GAL4. Proc Natl Acad Sci U S A (1988) 3.72
Extensive low-affinity transcriptional interactions in the yeast genome. Genome Res (2006) 3.67
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. Bioinformatics (2006) 3.67
A genetic signature of interspecies variations in gene expression. Nat Genet (2006) 3.61
Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. BMC Bioinformatics (2002) 3.61
Transcriptional control in the segmentation gene network of Drosophila. PLoS Biol (2004) 3.47
Genetic properties influencing the evolvability of gene expression. Science (2007) 3.45
Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning. J Mol Biol (2004) 3.43
Analysis of combinatorial cis-regulation in synthetic and genomic promoters. Nature (2008) 3.30
A probabilistic method to detect regulatory modules. Bioinformatics (2003) 3.24
Genomic sequence is highly predictive of local nucleosome depletion. PLoS Comput Biol (2007) 3.24
Chromatin decouples promoter threshold from dynamic range. Nature (2008) 3.24
Collaborative competition mechanism for gene activation in vivo. Mol Cell Biol (2003) 3.10
The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nat Struct Mol Biol (2006) 3.05
Induction of meiosis in Saccharomyces cerevisiae depends on conversion of the transcriptional represssor Ume6 to a positive regulator by its regulated association with the transcriptional activator Ime1. Mol Cell Biol (1996) 2.79
Action at a distance: DNA-looping and initiation of transcription. Trends Biochem Sci (1995) 2.64
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter. EMBO J (1988) 2.62
A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites. J Mol Biol (1996) 2.57
Genome-wide characterization of fission yeast DNA replication origins. EMBO J (2006) 2.53
Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci U S A (2007) 2.51
Explicit equilibrium modeling of transcription-factor binding and gene regulation. Genome Biol (2005) 2.50
A general model for nucleic acid helicases and their "coupling" within macromolecular machines. Cell (2001) 2.46
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proc Natl Acad Sci U S A (2008) 2.25
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet (2009) 2.22
Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter. Mol Cell Biol (2004) 1.92
A quantitative model of transcription factor-activated gene expression. Nat Struct Mol Biol (2008) 1.86
Systematic functional characterization of cis-regulatory motifs in human core promoters. Genome Res (2008) 1.83
Predicting human nucleosome occupancy from primary sequence. PLoS Comput Biol (2008) 1.66
The Drosophila morphogenetic protein Bicoid binds DNA cooperatively. Development (1996) 1.59
DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Proc Natl Acad Sci U S A (2007) 1.53
The stability of nucleosomes at the replication fork. J Mol Biol (1996) 1.51
Modulation of promoter occupancy by cooperative DNA binding and activation-domain function is a major determinant of transcriptional regulation by activators in vivo. Proc Natl Acad Sci U S A (1996) 1.48
Distinct frequency-distributions of homopolymeric DNA tracts in different genomes. Nucleic Acids Res (1998) 1.48
Dynamics of ATP-dependent chromatin assembly by ACF. Nature (2002) 1.47
On the relation between promoter divergence and gene expression evolution. Mol Syst Biol (2008) 1.43
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends Genet (2004) 1.38
The interaction of transcription factors with nucleosomal DNA. Bioessays (1992) 1.38
Crossing the line between activation and repression. Trends Genet (2005) 1.09
In Vitro and in Vivo nucleosome positioning on the ovine beta-lactoglobulin gene are related. J Mol Biol (2006) 1.05
Multiple redundant sequence elements within the fission yeast ura4 replication origin enhancer. BMC Mol Biol (2001) 0.93
Modelling transcriptional interference and DNA looping in gene regulation. J Mol Biol (2007) 0.93
The effects of transcription on the nucleosome structure of four Dictyostelium genes. Nucleic Acids Res (1989) 0.89
A genomic code for nucleosome positioning. Nature (2006) 15.38
The DNA-encoded nucleosome organization of a eukaryotic genome. Nature (2008) 11.41
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol (2008) 5.71
Rapid spontaneous accessibility of nucleosomal DNA. Nat Struct Mol Biol (2004) 5.00
Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr Opin Struct Biol (2009) 3.43
High flexibility of DNA on short length scales probed by atomic force microscopy. Nat Nanotechnol (2006) 3.23
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol (2007) 3.18
What controls nucleosome positions? Trends Genet (2009) 3.15
Spontaneous sharp bending of double-stranded DNA. Mol Cell (2004) 3.11
Collaborative competition mechanism for gene activation in vivo. Mol Cell Biol (2003) 3.10
Nucleosomes facilitate their own invasion. Nat Struct Mol Biol (2004) 2.91
High nucleosome occupancy is encoded at human regulatory sequences. PLoS One (2010) 2.43
A map of nucleosome positions in yeast at base-pair resolution. Nature (2012) 2.30
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet (2009) 2.22
Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity. Biopolymers (2007) 2.19
Controls of nucleosome positioning in the human genome. PLoS Genet (2012) 2.14
Using DNA mechanics to predict in vitro nucleosome positions and formation energies. Nucleic Acids Res (2009) 1.93
Nucleosome sequence preferences influence in vivo nucleosome organization. Nat Struct Mol Biol (2010) 1.72
Spontaneous access to DNA target sites in folded chromatin fibers. J Mol Biol (2008) 1.69
Improved alignment of nucleosome DNA sequences using a mixture model. Nucleic Acids Res (2005) 1.60
What does physics have to do with cancer? Nat Rev Cancer (2011) 1.59
Dynamics of nucleosome invasion by DNA binding proteins. J Mol Biol (2011) 1.35
Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae. PLoS Comput Biol (2008) 1.34
A physical sciences network characterization of non-tumorigenic and metastatic cells. Sci Rep (2013) 1.33
Mechanism of transcriptional silencing in yeast. Cell (2005) 1.31
Dynamics and function of compact nucleosome arrays. Nat Struct Mol Biol (2009) 1.30
Predicting nucleosome positioning using a duration Hidden Markov Model. BMC Bioinformatics (2010) 1.29
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol (2010) 1.25
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy. Genome Res (2010) 1.19
The activation-induced cytidine deaminase (AID) efficiently targets DNA in nucleosomes but only during transcription. J Exp Med (2009) 1.12
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning. Proc Natl Acad Sci U S A (2013) 1.04
Structural constraints in collaborative competition of transcription factors against the nucleosome. J Mol Biol (2011) 1.03
Nucleosome switches. Phys Rev Lett (2008) 0.96
The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo. Elife (2014) 0.95
Nucleosome mapping across the CFTR locus identifies novel regulatory factors. Nucleic Acids Res (2013) 0.92
Molecular basis of transcriptional silencing in budding yeast. Biochem Cell Biol (2004) 0.92
High-resolution nucleosome mapping of targeted regions using BAC-based enrichment. Nucleic Acids Res (2013) 0.91
A chemical approach to mapping nucleosomes at base pair resolution in yeast. Methods Enzymol (2012) 0.90
Stopped-flow fluorescence resonance energy transfer for analysis of nucleosome dynamics. Methods (2007) 0.89
Two-step mechanism for modifier of transcription 1 (Mot1) enzyme-catalyzed displacement of TATA-binding protein (TBP) from DNA. J Biol Chem (2012) 0.89
Program review. Challenges and opportunities for training the next generation of biophysicists: perspectives of the directors of the Molecular Biophysics Training Program at Northwestern University. Biopolymers (2008) 0.85
Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs. BMC Genomics (2013) 0.83
In vitro selection of DNAs with an increased propensity to form small circles. Biopolymers (2015) 0.83
Modeling DNA-bending in the nucleosome: role of AA periodicity. J Phys Chem B (2011) 0.80
Structure-based identification of new high-affinity nucleosome binding sequences. J Mol Biol (2012) 0.79
High-density nucleosome occupancy map of human chromosome 9p21-22 reveals chromatin organization of the type I interferon gene cluster. J Interferon Cytokine Res (2014) 0.76