PubRank

Pedro M Coutinho

Author PubWeight™ 196.85‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 2008 27.83
2 The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 2013 10.24
3 Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 2007 6.21
4 Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol 2007 5.79
5 Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 2010 5.79
6 Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 2008 5.38
7 Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol 2008 5.19
8 The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012 4.93
9 Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 2004 4.85
10 Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins. Protein Eng Des Sel 2006 4.13
11 Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A 2009 4.09
12 Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 2009 4.05
13 Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci U S A 2009 4.03
14 Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet 2011 3.52
15 Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnol Biofuels 2013 3.30
16 Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol 2006 3.30
17 Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science 2012 2.93
18 Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci U S A 2011 2.84
19 Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut. Proc Natl Acad Sci U S A 2007 2.79
20 Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 2009 2.75
21 Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci U S A 2009 2.71
22 The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi. Science 2011 2.67
23 Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature 2010 2.61
24 Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. PLoS Genet 2011 2.58
25 Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5). BMC Evol Biol 2012 2.54
26 Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol 2010 2.44
27 The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol 2008 2.43
28 Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol 2010 2.36
29 The convergence of carbohydrate active gene repertoires in human gut microbes. Proc Natl Acad Sci U S A 2008 2.33
30 Finding genomic ontology terms in text using evidence content. BMC Bioinformatics 2005 2.32
31 The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet 2009 2.29
32 Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 2011 2.17
33 Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nat Biotechnol 2011 2.11
34 Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. ISME J 2010 1.95
35 Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. Plant J 2006 1.91
36 Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proc Natl Acad Sci U S A 2010 1.89
37 A hierarchical classification of polysaccharide lyases for glycogenomics. Biochem J 2010 1.87
38 Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb Ecol 2010 1.74
39 Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc Natl Acad Sci U S A 2012 1.74
40 Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biol 2011 1.72
41 Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T. PLoS Genet 2008 1.64
42 Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res 2010 1.64
43 Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen. Plant Physiol 2005 1.62
44 Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proc Natl Acad Sci U S A 2012 1.61
45 Complete cellulase system in the marine bacterium Saccharophagus degradans strain 2-40T. J Bacteriol 2006 1.41
46 Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina. Appl Environ Microbiol 2012 1.39
47 Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. PLoS One 2009 1.37
48 Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis. BMC Genomics 2012 1.34
49 FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol 2008 1.31
50 The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS One 2009 1.28
51 Genome of the red alga Porphyridium purpureum. Nat Commun 2013 1.17
52 Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol 2012 1.17
53 How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity. Proc Natl Acad Sci U S A 2012 1.14
54 Modulation of cellulosome composition in Clostridium cellulolyticum: adaptation to the polysaccharide environment revealed by proteomic and carbohydrate-active enzyme analyses. Proteomics 2010 1.13
55 Podospora anserina hemicellulases potentiate the Trichoderma reesei secretome for saccharification of lignocellulosic biomass. Appl Environ Microbiol 2010 1.13
56 Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. PLoS One 2010 1.10
57 Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level. BMC Genomics 2011 1.10
58 A novel unsaturated β-glucuronyl hydrolase involved in ulvan degradation unveils the versatility of stereochemistry requirements in family GH105. J Biol Chem 2014 1.03
59 Glycogen metabolism loss: a common marker of parasitic behaviour in bacteria? Trends Genet 2002 1.02
60 Signature active site architectures illuminate the molecular basis for ligand specificity in family 35 carbohydrate binding module. Biochemistry 2010 1.01
61 Crystal structure of α-galactosidase from Lactobacillus acidophilus NCFM: insight into tetramer formation and substrate binding. J Mol Biol 2011 0.99
62 Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds. Carbohydr Res 2005 0.99
63 Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood. Appl Microbiol Biotechnol 2008 0.98
64 Effects of dietary fiber on the feline gastrointestinal metagenome. J Proteome Res 2012 0.96
65 The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. BMC Genomics 2014 0.94
66 Analysis of the structural and functional diversity of plant cell wall specific family 6 carbohydrate binding modules. Biochemistry 2009 0.94
67 Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin. BMC Genomics 2012 0.93
68 The α-glucuronidase Agu1 from Schizophyllum commune is a member of a novel glycoside hydrolase family (GH115). Appl Microbiol Biotechnol 2011 0.92
69 Aspergillus aculeatus beta-1,4-galactanase: substrate recognition and relations to other glycoside hydrolases in clan GH-A. Biochemistry 2002 0.90
70 A thermostable GH45 endoglucanase from yeast: impact of its atypical multimodularity on activity. Microb Cell Fact 2011 0.90
71 Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion. Appl Environ Microbiol 2012 0.88
72 Recognition of the helical structure of beta-1,4-galactan by a new family of carbohydrate-binding modules. J Biol Chem 2010 0.87
73 A new archaeal beta-glycosidase from Sulfolobus solfataricus: seeding a novel retaining beta-glycan-specific glycoside hydrolase family along with the human non-lysosomal glucosylceramidase GBA2. J Biol Chem 2010 0.86
74 A novel, noncatalytic carbohydrate-binding module displays specificity for galactose-containing polysaccharides through calcium-mediated oligomerization. J Biol Chem 2011 0.84
75 Carbohydrate-active enzymes from pigmented Bacilli: a genomic approach to assess carbohydrate utilization and degradation. BMC Microbiol 2011 0.84
76 Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain. Environ Microbiol 2013 0.84
77 Multiple rewards from a treasure trove of novel glycoside hydrolase and polysaccharide lyase structures: new folds, mechanistic details, and evolutionary relationships. Curr Opin Struct Biol 2013 0.83
78 Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. BMC Genomics 2013 0.82
79 Sphingomonas paucimobilis beta-glucosidase Bgl1: a member of a new bacterial subfamily in glycoside hydrolase family 1. Biochem J 2003 0.82
80 The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment. PLoS One 2011 0.82
81 First structural insights into α-L-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. J Biol Chem 2014 0.81
82 Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes. Appl Microbiol Biotechnol 2014 0.80
83 Gene overexpression and biochemical characterization of the biotechnologically relevant chlorogenic acid hydrolase from Aspergillus niger. Appl Environ Microbiol 2007 0.79
84 Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina. Appl Environ Microbiol 2013 0.78