Published in Comput Biol Chem on June 25, 2009
Signal processing in complex chemotaxis pathways. Nat Rev Microbiol (2011) 2.52
Context-dependent interaction leads to emergent search behavior in social aggregates. Proc Natl Acad Sci U S A (2009) 1.82
Secondary bacterial flagellar system improves bacterial spreading by increasing the directional persistence of swimming. Proc Natl Acad Sci U S A (2014) 0.96
Modeling local interactions during the motion of cyanobacteria. J Theor Biol (2012) 0.94
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Modeling novelty habituation during exploratory activity in Drosophila. Behav Processes (2013) 0.76
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Cyclic dermal BMP signalling regulates stem cell activation during hair regeneration. Nature (2008) 4.67
Stoichiometry and turnover in single, functioning membrane protein complexes. Nature (2006) 4.48
Conformational spread as a mechanism for cooperativity in the bacterial flagellar switch. Science (2010) 3.08
Signal processing in complex chemotaxis pathways. Nat Rev Microbiol (2011) 2.52
The maximum number of torque-generating units in the flagellar motor of Escherichia coli is at least 11. Proc Natl Acad Sci U S A (2006) 2.25
Inherent noise can facilitate coherence in collective swarm motion. Proc Natl Acad Sci U S A (2009) 2.19
Mathematical modeling of cell population dynamics in the colonic crypt and in colorectal cancer. Proc Natl Acad Sci U S A (2007) 1.99
Self-organizing and stochastic behaviors during the regeneration of hair stem cells. Science (2011) 1.96
Signal-dependent turnover of the bacterial flagellar switch protein FliM. Proc Natl Acad Sci U S A (2010) 1.79
Two-component systems and their co-option for eukaryotic signal transduction. Curr Biol (2011) 1.74
Mathematical oncology: cancer summed up. Nature (2003) 1.67
Rhodobacter sphaeroides: complexity in chemotactic signalling. Trends Microbiol (2008) 1.62
Spatial organization in bacterial chemotaxis. EMBO J (2010) 1.62
A PHABULOSA/cytokinin feedback loop controls root growth in Arabidopsis. Curr Biol (2012) 1.61
Metabolic changes during carcinogenesis: potential impact on invasiveness. J Theor Biol (2006) 1.59
Angiogenesis and vascular remodelling in normal and cancerous tissues. J Math Biol (2008) 1.55
Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris. Proc Natl Acad Sci U S A (2010) 1.48
Localization of MreB in Rhodobacter sphaeroides under conditions causing changes in cell shape and membrane structure. J Bacteriol (2005) 1.42
Inducible-expression plasmid for Rhodobacter sphaeroides and Paracoccus denitrificans. Appl Environ Microbiol (2009) 1.40
The third chemotaxis locus of Rhodobacter sphaeroides is essential for chemotaxis. Mol Microbiol (2002) 1.38
Multiscale modelling of vascular tumour growth in 3D: the roles of domain size and boundary conditions. PLoS One (2011) 1.36
An analysis of B cell selection mechanisms in germinal centers. Math Med Biol (2006) 1.32
Phosphotransfer in Rhodobacter sphaeroides chemotaxis. J Mol Biol (2002) 1.29
Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex. PLoS Biol (2010) 1.29
The positioning of cytoplasmic protein clusters in bacteria. Proc Natl Acad Sci U S A (2006) 1.28
The CheYs of Rhodobacter sphaeroides. J Biol Chem (2006) 1.26
The role of acidity in solid tumour growth and invasion. J Theor Biol (2005) 1.23
Interactions between Shh, Sostdc1 and Wnt signaling and a new feedback loop for spatial patterning of the teeth. Development (2011) 1.21
A molecular brake, not a clutch, stops the Rhodobacter sphaeroides flagellar motor. Proc Natl Acad Sci U S A (2009) 1.18
Deciphering chemotaxis pathways using cross species comparisons. BMC Syst Biol (2010) 1.16
Load-dependent assembly of the bacterial flagellar motor. MBio (2013) 1.14
ParA-like protein uses nonspecific chromosomal DNA binding to partition protein complexes. Proc Natl Acad Sci U S A (2012) 1.12
Mixed-mode pattern in Doublefoot mutant mouse limb--Turing reaction-diffusion model on a growing domain during limb development. J Theor Biol (2005) 1.12
Examples of mathematical modeling: tales from the crypt. Cell Cycle (2007) 1.11
Chemotaxis in Rhodobacter sphaeroides requires an atypical histidine protein kinase. J Biol Chem (2004) 1.11
Quantification of flagellar motor stator dynamics through in vivo proton-motive force control. Mol Microbiol (2012) 1.10
A theoretical investigation of the effect of proliferation and adhesion on monoclonal conversion in the colonic crypt. J Theor Biol (2012) 1.07
Multiscale mechanisms of cell migration during development: theory and experiment. Development (2012) 1.07
A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides. BMC Syst Biol (2009) 1.04
Spots and stripes: pleomorphic patterning of stem cells via p-ERK-dependent cell chemotaxis shown by feather morphogenesis and mathematical simulation. Dev Biol (2009) 1.03
Structure of bacterial cytoplasmic chemoreceptor arrays and implications for chemotactic signaling. Elife (2014) 1.03
Four signalling domains in the hybrid histidine protein kinase RodK of Myxococcus xanthus are required for activity. Mol Microbiol (2006) 1.03
Constitutive dimerization of the G-protein coupled receptor, neurotensin receptor 1, reconstituted into phospholipid bilayers. Biophys J (2009) 1.02
Multi-cellular rosettes in the mouse visceral endoderm facilitate the ordered migration of anterior visceral endoderm cells. PLoS Biol (2012) 1.02
Transmembrane helix dynamics of bacterial chemoreceptors supports a piston model of signalling. PLoS Comput Biol (2011) 1.02
Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris. Mol Microbiol (2012) 1.01
Requirements for chemotaxis protein localization in Rhodobacter sphaeroides. Mol Microbiol (2005) 1.01
In vivo and in vitro analysis of the Rhodobacter sphaeroides chemotaxis signaling complexes. Methods Enzymol (2007) 1.00
A bifunctional kinase-phosphatase in bacterial chemotaxis. Proc Natl Acad Sci U S A (2008) 1.00
Speed of pattern appearance in reaction-diffusion models: implications in the pattern formation of limb bud mesenchyme cells. Bull Math Biol (2004) 0.99
Non-linear incidence and stability of infectious disease models. Math Med Biol (2005) 0.98
Differential localization of Mre proteins with PBP2 in Rhodobacter sphaeroides. J Bacteriol (2006) 0.97
On the proportion of cancer stem cells in a tumour. J Theor Biol (2010) 0.97
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB. Bioinformatics (2011) 0.97
A mathematical model of tumour and blood pHe regulation: The HCO3-/CO2 buffering system. Math Biosci (2010) 0.97
Genome sequence of Rhodobacter sphaeroides Strain WS8N. J Bacteriol (2011) 0.96
Reptile scale paradigm: Evo-Devo, pattern formation and regeneration. Int J Dev Biol (2009) 0.95
Tactic responses to oxygen in the phototrophic bacterium Rhodobacter sphaeroides WS8N. J Bacteriol (2002) 0.95
Systems model of T cell receptor proximal signaling reveals emergent ultrasensitivity. PLoS Comput Biol (2013) 0.94
Modeling chemotaxis reveals the role of reversed phosphotransfer and a bi-functional kinase-phosphatase. PLoS Comput Biol (2010) 0.94
Tumour-stromal interactions in acid-mediated invasion: a mathematical model. J Theor Biol (2010) 0.94
Interpreting two-photon imaging data of lymphocyte motility. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.93
Age-related changes in speed and mechanism of adult skeletal muscle stem cell migration. Stem Cells (2012) 0.93
Mechanism of bacterial signal transduction revealed by molecular dynamics of Tsr dimers and trimers of dimers in lipid vesicles. PLoS Comput Biol (2012) 0.92
Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res (2009) 0.92
From segment to somite: segmentation to epithelialization analyzed within quantitative frameworks. Dev Dyn (2007) 0.92
Growth-induced mass flows in fungal networks. Proc Biol Sci (2010) 0.92
Specificity of localization and phosphotransfer in the CheA proteins of Rhodobacter sphaeroides. Mol Microbiol (2010) 0.91
Distinct mechanisms underlie pattern formation in the skin and skin appendages. Birth Defects Res C Embryo Today (2006) 0.91
Mode transitions in a model reaction-diffusion system driven by domain growth and noise. Bull Math Biol (2006) 0.91
A numerical approach to the study of spatial pattern formation in the ligaments of arcoid bivalves. Bull Math Biol (2002) 0.90
Coupling of multicellular morphogenesis and cellular differentiation by an unusual hybrid histidine protein kinase in Myxococcus xanthus. Mol Microbiol (2005) 0.90
Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies. Int J Dev Biol (2009) 0.90
Collagen bundle morphometry in skin and scar tissue: a novel distance mapping method provides superior measurements compared to Fourier analysis. J Microsc (2011) 0.90
Two chemosensory operons of Rhodobacter sphaeroides are regulated independently by sigma 28 and sigma 54. J Bacteriol (2006) 0.90
Novel methods for analysing bacterial tracks reveal persistence in Rhodobacter sphaeroides. PLoS Comput Biol (2013) 0.90
A fibrocontractive mechanochemical model of dermal wound closure incorporating realistic growth factor kinetics. Bull Math Biol (2012) 0.90
Modelling spatially regulated beta-catenin dynamics and invasion in intestinal crypts. Biophys J (2010) 0.89
Implementing vertex dynamics models of cell populations in biology within a consistent computational framework. Prog Biophys Mol Biol (2013) 0.89
Modeling the skin pattern of fishes. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.89
Mathematical models for somite formation. Curr Top Dev Biol (2008) 0.89
Stochastic reaction and diffusion on growing domains: understanding the breakdown of robust pattern formation. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.89
Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology. C R Biol (2002) 0.88
Episodic, transient systemic acidosis delays evolution of the malignant phenotype: Possible mechanism for cancer prevention by increased physical activity. Biol Direct (2010) 0.88
Polar localization of CheA2 in Rhodobacter sphaeroides requires specific Che homologs. J Bacteriol (2003) 0.88
Conformational spread in the flagellar motor switch: a model study. PLoS Comput Biol (2012) 0.88
Mathematical modelling of tumour acidity. J Theor Biol (2008) 0.88
A lyapunov function and global properties for sir and seir epidemiological models with nonlinear incidence. Math Biosci Eng (2004) 0.88
From a discrete to a continuum model of cell dynamics in one dimension. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.87
Stability analysis of non-autonomous reaction-diffusion systems: the effects of growing domains. J Math Biol (2009) 0.87
Feedback control architecture and the bacterial chemotaxis network. PLoS Comput Biol (2011) 0.87
Flagellar hook flexibility is essential for bundle formation in swimming Escherichia coli cells. J Bacteriol (2012) 0.86
Going from microscopic to macroscopic on nonuniform growing domains. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.86
Theoretical insights into bacterial chemotaxis. Wiley Interdiscip Rev Syst Biol Med (2012) 0.86