Published in Plant J on August 08, 2009
Circadian control of global gene expression patterns. Annu Rev Genet (2010) 1.85
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. J Exp Bot (2011) 1.53
Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes. BMC Plant Biol (2015) 1.41
Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecol Evol (2013) 1.21
Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. BMC Genomics (2010) 1.20
Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). BMC Genomics (2011) 1.17
Network news: prime time for systems biology of the plant circadian clock. Curr Opin Genet Dev (2010) 1.07
Clone history shapes Populus drought responses. Proc Natl Acad Sci U S A (2011) 1.05
Comprehensive analysis of CCCH zinc finger family in poplar (Populus trichocarpa). BMC Genomics (2012) 1.03
How tree roots respond to drought. Front Plant Sci (2015) 0.91
Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.). BMC Genomics (2014) 0.91
Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics. PLoS One (2011) 0.91
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments. Plant Cell (2016) 0.91
Integrating circadian dynamics with physiological processes in plants. Nat Rev Genet (2015) 0.88
Roles of gibberellin catabolism and signaling in growth and physiological response to drought and short-day photoperiods in Populus trees. PLoS One (2014) 0.88
Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii. Plant Cell Rep (2013) 0.88
Constitutively elevated salicylic acid levels alter photosynthesis and oxidative state but not growth in transgenic populus. Plant Cell (2013) 0.87
Isolation and characterization of galactinol synthases from hybrid poplar. J Exp Bot (2011) 0.87
Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa. Elife (2017) 0.85
Developmental and environmental regulation of Aquaporin gene expression across Populus species: divergence or redundancy? PLoS One (2013) 0.83
Nitrogen metabolism of two contrasting poplar species during acclimation to limiting nitrogen availability. J Exp Bot (2013) 0.83
Drought induces alterations in the stomatal development program in Populus. J Exp Bot (2012) 0.83
Responses to environmental stresses in woody plants: key to survive and longevity. J Plant Res (2011) 0.80
Poplar trees reconfigure the transcriptome and metabolome in response to drought in a genotype- and time-of-day-dependent manner. BMC Genomics (2015) 0.80
Transcriptional profiling by cDNA-AFLP analysis showed differential transcript abundance in response to water stress in Populus hopeiensis. BMC Genomics (2012) 0.80
Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis. Plant J (2016) 0.79
Transcriptome-wide profiling and expression analysis of diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei under drought stress. PLoS One (2014) 0.79
Interplay between circadian rhythm, time of the day and osmotic stress constraints in the regulation of the expression of a Solanum Double B-box gene. Ann Bot (2014) 0.78
Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics (2015) 0.78
Adaptive mechanisms and genomic plasticity for drought tolerance identified in European black poplar (Populus nigra L.). Tree Physiol (2016) 0.77
Transcriptome-Wide Identification of Reference Genes for Expression Analysis of Soybean Responses to Drought Stress along the Day. PLoS One (2015) 0.76
Identification of TIFY Family Genes and Analysis of Their Expression Profiles in Response to Phytohormone Treatments and Melampsora larici-populina Infection in Poplar. Front Plant Sci (2017) 0.75
Global Reprogramming of Transcription in Chinese Fir (Cunninghamia lanceolata) during Progressive Drought Stress and after Rewatering. Int J Mol Sci (2015) 0.75
Gene expression patterns of two dominant tallgrass prairie species differ in response to warming and altered precipitation. Sci Rep (2016) 0.75
Comparative transcriptomic analysis reveals the roles of overlapping heat-/drought-responsive genes in poplars exposed to high temperature and drought. Sci Rep (2017) 0.75
Genome scans for divergent selection in natural populations of the widespread hardwood species Eucalyptus grandis (Myrtaceae) using microsatellites. Sci Rep (2016) 0.75
Crosstalk between diurnal rhythm and water stress reveals an altered primary carbon flux into soluble sugars in drought-treated rice leaves. Sci Rep (2017) 0.75
Metagenomic biomarker discovery and explanation. Genome Biol (2011) 11.29
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One (2007) 9.60
Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods (2012) 8.37
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
Stem cell gene expression programs influence clinical outcome in human leukemia. Nat Med (2011) 5.24
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol (2012) 4.68
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell (2002) 4.58
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput Biol (2013) 2.96
Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas. Clin Cancer Res (2010) 2.79
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ (2009) 2.76
Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues. Lab Invest (2009) 2.43
A predicted interactome for Arabidopsis. Plant Physiol (2007) 2.41
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
Characterisation of a pine MYB that regulates lignification. Plant J (2003) 2.26
mRNA transcript quantification in archival samples using multiplexed, color-coded probes. BMC Biotechnol (2011) 2.20
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell (2011) 2.13
Expansion and diversification of the Populus R2R3-MYB family of transcription factors. Plant Physiol (2008) 2.05
AtMYB61, an R2R3-MYB transcription factor controlling stomatal aperture in Arabidopsis thaliana. Curr Biol (2005) 1.78
MicroRNA-301 mediates proliferation and invasion in human breast cancer. Cancer Res (2011) 1.75
Elucidating the germination transcriptional program using small molecules. Plant Physiol (2008) 1.53
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc Natl Acad Sci U S A (2011) 1.49
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
The wound-, pathogen-, and ultraviolet B-responsive MYB134 gene encodes an R2R3 MYB transcription factor that regulates proanthocyanidin synthesis in poplar. Plant Physiol (2009) 1.46
Characterisation of Pt MYB1, an R2R3-MYB from pine xylem. Plant Mol Biol (2003) 1.44
Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell (2009) 1.44
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome. Database (Oxford) (2013) 1.40
Involvement of the R2R3-MYB, AtMYB61, in the ectopic lignification and dark-photomorphogenic components of the det3 mutant phenotype. Plant J (2004) 1.30
Light, the circadian clock, and sugar perception in the control of lignin biosynthesis. J Exp Bot (2005) 1.21
Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecol Evol (2013) 1.21
An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol (2008) 1.20
BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species. Plant J (2012) 1.20
A role for glycine in the gating of plant NMDA-like receptors. Plant J (2003) 1.19
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One (2011) 1.16
Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood. Appl Environ Microbiol (2011) 1.13
Potentially prognostic miRNAs in HPV-associated oropharyngeal carcinoma. Clin Cancer Res (2013) 1.13
The interaction between MYB proteins and their target DNA binding sites. Biochim Biophys Acta (2011) 1.11
Analysis of gene expression patterns during seed coat development in Arabidopsis. Mol Plant (2011) 1.08
Time of day shapes Arabidopsis drought transcriptomes. Plant J (2010) 1.08
Identification of innate immunity elicitors using molecular signatures of natural selection. Proc Natl Acad Sci U S A (2012) 1.08
Functional interactions between a glutamine synthetase promoter and MYB proteins. Plant J (2004) 1.07
Clone history shapes Populus drought responses. Proc Natl Acad Sci U S A (2011) 1.05
The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome. PLoS One (2011) 1.03
A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence. BMC Cancer (2011) 1.02
Comparison of lignin deposition in three ectopic lignification mutants. New Phytol (2005) 1.00
AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network. New Phytol (2012) 0.99
A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant Cell Physiol (2004) 0.99
MetaBase--the wiki-database of biological databases. Nucleic Acids Res (2011) 0.98
The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis. BMC Biol (2012) 0.98
Intraspecific variation in the Populus balsamifera drought transcriptome. Plant Cell Environ (2010) 0.97
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. BMC Bioinformatics (2007) 0.97
Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples. BMC Biotechnol (2010) 0.97
BlastDigester--a web-based program for efficient CAPS marker design. Trends Genet (2004) 0.94
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2. BMC Genomics (2012) 0.94
Constitutively high expression of the histidine biosynthetic pathway contributes to nickel tolerance in hyperaccumulator plants. Plant Cell (2005) 0.93
Forward and reverse genetics to identify genes involved in the age-related resistance response in Arabidopsis thaliana. Mol Plant Pathol (2009) 0.92
Interplay between sucrose and folate modulates auxin signaling in Arabidopsis. Plant Physiol (2013) 0.92
Developmental transcriptional profiling reveals key insights into Triticeae reproductive development. Plant J (2013) 0.90
The murine caecal microRNA signature depends on the presence of the endogenous microbiota. Int J Biol Sci (2011) 0.90
Genome-wide analysis of plant metal transporters, with an emphasis on poplar. Cell Mol Life Sci (2010) 0.89
Kanamycin reveals the role played by glutamate receptors in shaping plant resource allocation. Plant J (2005) 0.88
Changes in stomatal function and water use efficiency in potato plants with altered sucrolytic activity. Plant Cell Environ (2011) 0.86
The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature. BMC Plant Biol (2012) 0.85
CapsID: a web-based tool for developing parsimonious sets of CAPS molecular markers for genotyping. BMC Genet (2006) 0.85
MicroRNA signature obtained from the comparison of aggressive with indolent non-Hodgkin lymphomas: potential prognostic value in mantle-cell lymphoma. J Clin Oncol (2013) 0.85
Drought induces alterations in the stomatal development program in Populus. J Exp Bot (2012) 0.83
Post-translational modification of an R2R3-MYB transcription factor by a MAP Kinase during xylem development. New Phytol (2009) 0.82
A predicted protein interactome for rice. Rice (N Y) (2012) 0.82
Interactions between the R2R3-MYB transcription factor, AtMYB61, and target DNA binding sites. PLoS One (2013) 0.82
Gene expression analyses for elucidating mechanisms of hormonal action in plants. Methods Mol Biol (2009) 0.81
Constitutive expression of a fungal glucuronoyl esterase in Arabidopsis reveals altered cell wall composition and structure. Plant Biotechnol J (2012) 0.81
Endogenous overexpression of Populus MYB186 increases trichome density, improves insect pest resistance, and impacts plant growth. Plant J (2010) 0.81
RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions. BMC Genomics (2013) 0.80
A comparative genomic analysis of ESTs from Ustilago maydis. Funct Integr Genomics (2004) 0.80
C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families. BMC Genomics (2007) 0.80
Public data and open source tools for multi-assay genomic investigation of disease. Brief Bioinform (2015) 0.80
PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya. Bioinformatics (2011) 0.80
Varied growth, biomass and cellulose content in tobacco expressing yeast-derived invertases. Planta (2006) 0.80
Genes and nitrogen fuel wood formation. New Phytol (2009) 0.79
Seed bioinformatics. Methods Mol Biol (2011) 0.78
Bioinformatic tools in Arabidopsis research. Methods Mol Biol (2014) 0.77
Two-stage microbial community experimental design. ISME J (2013) 0.77