Published in Nucleic Acids Res on December 01, 2011
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. BMC Bioinformatics (2014) 0.98
RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res (2013) 0.91
Taking Open Innovation to the Molecular Level - Strengths and Limitations. Mol Inform (2012) 0.81
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences. Bioinform Biol Insights (2015) 0.78
Linking genome-scale metabolic modeling and genome annotation. Methods Mol Biol (2013) 0.77
Community intelligence in knowledge curation: an application to managing scientific nomenclature. PLoS One (2013) 0.76
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. Database (Oxford) (2016) 0.75
Regulation of miR-29b-1/a transcription and identification of target mRNAs in CHO-K1 cells. Mol Cell Endocrinol (2017) 0.75
Ten Simple Rules for Developing Public Biological Databases. PLoS Comput Biol (2016) 0.75
Genome-wide miRNA response to anacardic acid in breast cancer cells. PLoS One (2017) 0.75
The miR-29 transcriptome in endocrine-sensitive and resistant breast cancer cells. Sci Rep (2017) 0.75
LiverWiki: a wiki-based database for human liver. BMC Bioinformatics (2017) 0.75
The COG database: an updated version includes eukaryotes. BMC Bioinformatics (2003) 60.98
The Pfam protein families database. Nucleic Acids Res (2009) 37.98
COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res (2010) 25.55
The ENZYME database in 2000. Nucleic Acids Res (2000) 23.85
The Database of Interacting Proteins: 2004 update. Nucleic Acids Res (2004) 23.67
ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res (2011) 14.51
The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res (2007) 14.24
Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res (2007) 13.44
FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res (2008) 12.15
The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res (2009) 11.49
The IntAct molecular interaction database in 2010. Nucleic Acids Res (2009) 9.85
GenBank. Nucleic Acids Res (2010) 8.63
The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res (2010) 7.68
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res (2010) 7.67
TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins. J Comput Biol (1994) 6.62
PubMed: bridging the information gap. CMAJ (2001) 6.49
BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Res (2010) 4.67
BRENDA, the enzyme information system in 2011. Nucleic Acids Res (2010) 3.83
WormBase 2007. Nucleic Acids Res (2007) 3.69
Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Res (2010) 2.93
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. Nucleic Acids Res (2010) 2.74
The EMBRACE web service collection. Nucleic Acids Res (2010) 2.26
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. J Biomed Inform (2010) 2.10
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Res (2011) 1.79
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi). BMC Genomics (2010) 1.44
HPID: the Human Protein Interaction Database. Bioinformatics (2004) 1.22
The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System--a one-stop gateway to online bioinformatics databases and software tools. Nucleic Acids Res (2006) 1.21
BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinformatics (2010) 1.18
OReFiL: an online resource finder for life sciences. BMC Bioinformatics (2007) 0.97
MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics. Appl Bioinformatics (2006) 0.96
Interoperability of CABRI Services and Biochemical Pathways Databases. Comp Funct Genomics (2004) 0.84
Once-only flexible sigmoidoscopy screening in prevention of colorectal cancer: a multicentre randomised controlled trial. Lancet (2010) 15.50
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science (2009) 10.21
An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One (2007) 9.60
The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group. Genome Res (2009) 7.87
The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Res (2006) 7.66
Mapping human genetic diversity in Asia. Science (2009) 7.40
Open software for biologists: from famine to feast. Nat Biotechnol (2006) 7.07
The Phage Proteomic Tree: a genome-based taxonomy for phage. J Bacteriol (2002) 6.09
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucleic Acids Res (2003) 5.70
Cell-specific targeting of nanoparticles by multivalent attachment of small molecules. Nat Biotechnol (2005) 5.19
Computed tomographic colonography versus colonoscopy for investigation of patients with symptoms suggestive of colorectal cancer (SIGGAR): a multicentre randomised trial. Lancet (2013) 5.14
Toward interoperable bioscience data. Nat Genet (2012) 4.72
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell (2002) 4.58
Osteogenesis associates with inflammation in early-stage atherosclerosis evaluated by molecular imaging in vivo. Circulation (2007) 4.20
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One (2008) 3.83
A public resource facilitating clinical use of genomes. Proc Natl Acad Sci U S A (2012) 3.72
MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinformatics (2006) 2.81
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ (2009) 2.76
Computed tomographic colonography versus barium enema for diagnosis of colorectal cancer or large polyps in symptomatic patients (SIGGAR): a multicentre randomised trial. Lancet (2013) 2.72
Wide variation in adenoma detection rates at screening flexible sigmoidoscopy. Gastroenterology (2004) 2.55
Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell (2006) 2.45
A predicted interactome for Arabidopsis. Plant Physiol (2007) 2.41
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
Dynamical networks in tRNA:protein complexes. Proc Natl Acad Sci U S A (2009) 2.31
Planning the human variome project: the Spain report. Hum Mutat (2009) 2.22
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci U S A (2010) 2.15
Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genet (2007) 2.08
Expansion and diversification of the Populus R2R3-MYB family of transcription factors. Plant Physiol (2008) 2.05
Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins. Proteins (2006) 1.87
A high-resolution anatomical ontology of the developing murine genitourinary tract. Gene Expr Patterns (2007) 1.77
PDBWiki: added value through community annotation of the Protein Data Bank. Database (Oxford) (2010) 1.72
Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas. PLoS Genet (2009) 1.61
A Semantic Web for bioinformatics: goals, tools, systems, applications. BMC Bioinformatics (2008) 1.58
Elucidating the germination transcriptional program using small molecules. Plant Physiol (2008) 1.53
Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc Natl Acad Sci U S A (2011) 1.49
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell (2009) 1.44
Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics (2010) 1.41
The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. J Mol Biol (2010) 1.35
Structural and functional constraints in the evolution of protein families. Nat Rev Mol Cell Biol (2009) 1.35
The tiger genome and comparative analysis with lion and snow leopard genomes. Nat Commun (2013) 1.32
Large-scale identification of human genes implicated in epidermal barrier function. Genome Biol (2007) 1.31
Organization of the pronephric kidney revealed by large-scale gene expression mapping. Genome Biol (2008) 1.31
Genotype and time of day shape the Populus drought response. Plant J (2009) 1.28
A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease. J Bioinform Comput Biol (2007) 1.26
Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. BMC Genomics (2012) 1.26
Marriage and cancer prevention: does marital status and inviting both spouses together influence colorectal cancer screening participation? J Med Screen (2006) 1.24
Using Galaxy to perform large-scale interactive data analyses. Curr Protoc Bioinformatics (2012) 1.22
Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC Genomics (2011) 1.21
Ten simple rules for organizing a virtual conference--anywhere. PLoS Comput Biol (2010) 1.21
An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol (2008) 1.20
BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species. Plant J (2012) 1.20
A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. J Bacteriol (2005) 1.19
SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions. BMC Bioinformatics (2008) 1.17
A protein domain interaction interface database: InterPare. BMC Bioinformatics (2005) 1.16
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database (Oxford) (2011) 1.16
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One (2011) 1.16
Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. BMC Bioinformatics (2008) 1.14
EcoliWiki: a wiki-based community resource for Escherichia coli. Nucleic Acids Res (2011) 1.12
Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics (2006) 1.12
Exploring residue component contributions to dynamical network models of allostery. J Chem Theory Comput (2012) 1.11
PanSNPdb: the Pan-Asian SNP genotyping database. PLoS One (2011) 1.10
Analysis of gene expression patterns during seed coat development in Arabidopsis. Mol Plant (2011) 1.08
Genomic profile analysis of diffuse-type gastric cancers. Genome Biol (2014) 1.07
MassNet: a functional annotation service for protein mass spectrometry data. Nucleic Acids Res (2008) 1.06
Metagenomic analysis of healthy and white plague-affected Mussismilia braziliensis corals. Microb Ecol (2013) 1.06
Connecting genotype to phenotype in the era of high-throughput sequencing. Biochim Biophys Acta (2011) 1.05
Genomic distribution of simple sequence repeats in Brassica rapa. Mol Cells (2007) 1.05
Impact of transcriptional properties on essentiality and evolutionary rate. Genetics (2006) 1.05
The genetic basis of white tigers. Curr Biol (2013) 1.05
De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. Plant Mol Biol (2012) 1.04
Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinformatics (2005) 1.04
The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome. PLoS One (2011) 1.03
Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai. Proc Natl Acad Sci U S A (2008) 1.01
Experimental and computational determination of tRNA dynamics. FEBS Lett (2010) 1.01
An integrated Korean biodiversity and genetic information retrieval system. BMC Bioinformatics (2008) 1.01
MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles. BMC Plant Biol (2011) 1.01
1H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon. Anal Chem (2009) 1.00
Next generation diagnostics in inherited arrhythmia syndromes : a comparison of two approaches. J Cardiovasc Transl Res (2012) 1.00
A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant Cell Physiol (2004) 0.99
Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Bioinformatics (2007) 0.99
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. BMC Bioinformatics (2014) 0.98
Inherited and acquired risk factors for venous thromboembolic disease among women taking tamoxifen to prevent breast cancer. J Clin Oncol (2003) 0.98
The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis. BMC Biol (2012) 0.98
Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. Genome Res (2013) 0.97
SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803. BMC Bioinformatics (2008) 0.97
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements. BMC Bioinformatics (2007) 0.97
The endogenous siRNA pathway in Drosophila impacts stress resistance and lifespan by regulating metabolic homeostasis. FEBS Lett (2011) 0.96
Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16. J Exp Bot (2012) 0.96
iAnn: an event sharing platform for the life sciences. Bioinformatics (2013) 0.96
Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. BMC Genomics (2011) 0.95
Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection. BMC Bioinformatics (2010) 0.95
ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database. Hum Mutat (2009) 0.95